Wall clock time and date at job start Tue Mar 31 2020 11:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47136 * 2 1 4 4 O 1.42900 * 109.47142 * 299.99964 * 3 2 1 5 5 C 1.52999 * 109.46974 * 239.99645 * 2 1 3 6 6 O 1.42902 * 109.47014 * 179.97438 * 5 2 1 7 7 C 1.53000 * 109.47198 * 120.00188 * 2 1 3 8 8 N 1.46506 * 109.47452 * 59.99548 * 7 2 1 9 9 C 1.35081 * 125.71161 * 124.99579 * 8 7 2 10 10 C 1.36913 * 106.00095 * 180.02562 * 9 8 7 11 11 C 1.47972 * 126.95169 * 179.97438 * 10 9 8 12 12 C 1.39960 * 119.88536 * 359.73045 * 11 10 9 13 13 C 1.36235 * 120.11845 * 179.75377 * 12 11 10 14 14 C 1.40940 * 119.87971 * 0.52170 * 13 12 11 15 15 C 1.41011 * 120.12147 * 179.71520 * 14 13 12 16 16 H 1.08002 * 119.99411 * 24.70317 * 15 14 13 17 17 C 1.39947 * 120.00364 * 204.71084 * 15 14 13 18 18 N 1.30834 * 120.00000 * 17.98300 * 17 15 14 19 19 Si 1.86803 * 119.99874 * 197.97824 * 17 15 14 20 20 H 1.48498 * 109.47244 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46839 * 120.00393 * 19 17 15 22 22 H 1.48497 * 109.47077 * 239.99708 * 19 17 15 23 23 C 1.40946 * 119.76524 * 359.73367 * 14 13 12 24 24 C 1.36228 * 119.88252 * 0.02562 * 23 14 13 25 25 N 1.34663 * 106.08948 * 0.02562 * 10 9 8 26 26 N 1.28610 * 108.74781 * 359.97438 * 25 10 9 27 27 H 1.08999 * 109.47124 * 299.99591 * 1 2 3 28 28 H 1.09001 * 109.47031 * 59.99914 * 1 2 3 29 29 H 1.09001 * 109.46979 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46780 * 60.00198 * 3 2 1 31 31 H 1.09001 * 109.47044 * 180.02562 * 3 2 1 32 32 H 0.96694 * 114.00051 * 180.02562 * 4 3 2 33 33 H 1.08995 * 109.47375 * 300.00350 * 5 2 1 34 34 H 1.09001 * 109.46881 * 60.00349 * 5 2 1 35 35 H 0.96704 * 113.99959 * 180.02562 * 6 5 2 36 36 H 1.09003 * 109.46773 * 300.00070 * 7 2 1 37 37 H 1.08990 * 109.47606 * 179.97438 * 7 2 1 38 38 H 1.08005 * 126.99913 * 359.74836 * 9 8 7 39 39 H 1.07992 * 119.93844 * 0.02562 * 12 11 10 40 40 H 1.07997 * 120.05859 * 180.22907 * 13 12 11 41 41 H 0.97000 * 120.00273 * 180.02562 * 18 17 15 42 42 H 1.08006 * 120.06060 * 179.97438 * 23 14 13 43 43 H 1.07993 * 119.94136 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 1.5637 2.1161 -1.1668 5 6 2.0400 -0.7213 -1.2492 6 8 3.4690 -0.7208 -1.2495 7 6 2.0400 -0.7213 1.2492 8 7 1.5516 -2.1025 1.2493 9 6 2.3190 -3.2102 1.3448 10 6 1.4556 -4.2720 1.3041 11 6 1.8074 -5.7076 1.3742 12 6 3.1481 -6.0923 1.4899 13 6 3.4769 -7.4125 1.5599 14 6 2.4650 -8.3920 1.5044 15 6 2.8001 -9.7601 1.5704 16 1 3.7190 -10.0686 2.0467 17 6 1.9422 -10.7181 1.0184 18 7 1.0314 -10.3583 0.1508 19 14 2.0975 -12.5108 1.5203 20 1 3.1965 -12.6547 2.5086 21 1 0.8220 -12.9666 2.1292 22 1 2.3968 -13.3360 0.3226 23 6 1.1169 -7.9992 1.3825 24 6 0.7986 -6.6762 1.3183 25 7 0.2218 -3.7455 1.1862 26 7 0.3204 -2.4636 1.1575 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.6767 1.9562 0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.8493 3.0375 -1.2331 33 1 1.6766 -1.7489 -1.2492 34 1 1.6767 -0.2075 -2.1392 35 1 3.8623 -1.1622 -2.0148 36 1 1.6767 -0.2074 2.1392 37 1 3.1299 -0.7217 1.2491 38 1 3.3948 -3.2501 1.4308 39 1 3.9229 -5.3410 1.5282 40 1 4.5115 -7.7081 1.6529 41 1 0.4365 -11.0222 -0.2315 42 1 0.3377 -8.7458 1.3391 43 1 -0.2341 -6.3742 1.2252 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001254137600.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:35 Heat of formation + Delta-G solvation = 13.769016 kcal Electronic energy + Delta-G solvation = -25969.290468 eV Core-core repulsion = 22209.427473 eV Total energy + Delta-G solvation = -3759.862994 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.69194 -39.05391 -37.52775 -36.44634 -35.28554 -33.92779 -32.55366 -31.30135 -29.60006 -28.81529 -27.45005 -26.36190 -26.06756 -25.31870 -22.25370 -21.87802 -20.29997 -20.17291 -19.12114 -17.89291 -17.46321 -17.39606 -17.04249 -16.13809 -15.55249 -15.40905 -14.92881 -14.75445 -14.34587 -14.08560 -13.90591 -13.61688 -13.12169 -13.03415 -12.80733 -12.65413 -12.36154 -12.12167 -11.96277 -11.70841 -11.57735 -11.35774 -11.14140 -10.97284 -10.90042 -10.60473 -10.49754 -10.34740 -10.30321 -10.11061 -9.74716 -9.65756 -9.39729 -9.26997 -8.79153 -7.56123 -7.13049 -6.85739 -4.40233 1.94714 2.44146 2.61057 2.96100 3.03298 3.08588 3.13541 3.69439 3.76473 3.85706 4.06775 4.31558 4.38667 4.64221 4.72669 4.88757 4.94251 5.00014 5.10551 5.29877 5.42917 5.48033 5.53263 5.64061 5.70150 5.80380 5.83043 5.91846 6.11231 6.20824 6.34417 6.45506 6.79851 6.96627 6.98273 7.05745 7.21823 7.27210 7.31224 7.38898 7.58691 7.84928 7.99058 8.10358 8.20997 8.56450 8.78528 8.90184 9.09700 10.05353 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.033930 B = 0.002465 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.037912 B =11354.439716 C =11564.602369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.067 4.067 3 C 0.094 3.906 4 O -0.567 6.567 5 C 0.088 3.912 6 O -0.574 6.574 7 C 0.132 3.868 8 N -0.289 5.289 9 C -0.082 4.082 10 C 0.083 3.917 11 C -0.167 4.167 12 C -0.060 4.060 13 C -0.231 4.231 14 C 0.120 3.880 15 C -0.449 4.449 16 H 0.081 0.919 17 C 0.074 3.926 18 N -0.779 5.779 19 Si 0.910 3.090 20 H -0.259 1.259 21 H -0.270 1.270 22 H -0.273 1.273 23 C -0.174 4.174 24 C -0.060 4.060 25 N -0.280 5.280 26 N -0.100 5.100 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.093 0.907 30 H 0.048 0.952 31 H 0.057 0.943 32 H 0.380 0.620 33 H 0.046 0.954 34 H 0.058 0.942 35 H 0.383 0.617 36 H 0.093 0.907 37 H 0.109 0.891 38 H 0.181 0.819 39 H 0.089 0.911 40 H 0.095 0.905 41 H 0.283 0.717 42 H 0.119 0.881 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.659 19.173 -1.199 19.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.068 4.068 3 C 0.015 3.985 4 O -0.372 6.372 5 C 0.010 3.990 6 O -0.380 6.380 7 C 0.010 3.990 8 N -0.084 5.084 9 C -0.231 4.231 10 C -0.052 4.052 11 C -0.171 4.171 12 C -0.080 4.080 13 C -0.250 4.250 14 C 0.117 3.883 15 C -0.478 4.478 16 H 0.100 0.900 17 C -0.146 4.146 18 N -0.403 5.403 19 Si 0.734 3.266 20 H -0.182 1.182 21 H -0.195 1.195 22 H -0.199 1.199 23 C -0.194 4.194 24 C -0.079 4.079 25 N -0.147 5.147 26 N -0.078 5.078 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.111 0.889 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.227 0.773 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.230 0.770 36 H 0.112 0.888 37 H 0.128 0.872 38 H 0.198 0.802 39 H 0.107 0.893 40 H 0.113 0.887 41 H 0.094 0.906 42 H 0.137 0.863 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.633 19.328 -1.037 19.425 hybrid contribution 1.609 -0.733 -0.211 1.781 sum 3.242 18.596 -1.248 18.917 Atomic orbital electron populations 1.22089 0.91489 1.05291 1.02236 1.20845 0.98134 0.93963 0.93836 1.21942 0.97871 0.91069 0.87579 1.86443 1.77437 1.29026 1.44292 1.22094 0.80814 0.98932 0.97140 1.86321 1.19719 1.81794 1.50210 1.21853 1.00856 0.77491 0.98818 1.46765 1.05802 1.07483 1.48348 1.23357 0.99392 0.85301 1.15049 1.20736 0.88183 0.94825 1.01466 1.17065 0.93550 0.86141 1.20294 1.20187 0.93475 0.95420 0.98905 1.20608 0.97680 0.92482 1.14271 1.17733 0.91301 0.92842 0.86454 1.19688 1.05568 0.91037 1.31482 0.90043 1.26013 0.93781 1.02027 0.92775 1.69846 1.14833 1.36946 1.18625 0.86233 0.79578 0.81236 0.79580 1.18243 1.19521 1.19863 1.21004 0.96776 0.94209 1.07383 1.20487 0.96967 0.92941 0.97528 1.75319 1.22181 0.98772 1.18404 1.77909 1.00363 1.08946 1.20602 0.92174 0.91824 0.88866 0.93388 0.92450 0.77328 0.93552 0.92362 0.76995 0.88840 0.87240 0.80201 0.89336 0.88682 0.90553 0.86329 0.88469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 7.90 37.16 0.29 -1.47 16 2 C -0.07 -0.69 0.51 -154.51 -0.08 -0.77 16 3 C 0.09 0.75 5.77 37.16 0.21 0.96 16 4 O -0.57 -4.67 12.31 -35.23 -0.43 -5.10 16 5 C 0.09 1.01 5.61 37.16 0.21 1.22 16 6 O -0.57 -5.86 12.31 -35.23 -0.43 -6.29 16 7 C 0.13 1.40 5.28 -4.04 -0.02 1.38 16 8 N -0.29 -4.35 2.66 -60.90 -0.16 -4.52 16 9 C -0.08 -1.38 10.96 -16.60 -0.18 -1.56 16 10 C 0.08 1.72 6.98 -83.12 -0.58 1.14 16 11 C -0.17 -3.84 5.90 -104.62 -0.62 -4.46 16 12 C -0.06 -1.32 9.51 -39.66 -0.38 -1.70 16 13 C -0.23 -5.49 9.73 -39.28 -0.38 -5.87 16 14 C 0.12 3.13 5.57 -106.80 -0.60 2.53 16 15 C -0.45 -11.53 9.03 -37.89 -0.34 -11.87 16 16 H 0.08 1.99 7.91 -52.49 -0.42 1.58 16 17 C 0.07 1.80 5.13 -17.34 -0.09 1.71 16 18 N -0.78 -19.69 10.96 55.55 0.61 -19.08 16 19 Si 0.91 18.04 29.60 -169.99 -5.03 13.01 16 20 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 21 H -0.27 -5.30 7.11 56.52 0.40 -4.89 16 22 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 23 C -0.17 -4.55 8.63 -39.28 -0.34 -4.89 16 24 C -0.06 -1.48 9.64 -39.66 -0.38 -1.86 16 25 N -0.28 -5.94 12.15 33.05 0.40 -5.54 16 26 N -0.10 -1.80 9.90 60.35 0.60 -1.21 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.72 7.68 -51.93 -0.40 0.33 16 29 H 0.09 1.33 5.31 -51.93 -0.28 1.05 16 30 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.44 7.68 -51.93 -0.40 0.04 16 32 H 0.38 1.40 9.12 45.56 0.42 1.82 16 33 H 0.05 0.65 7.60 -51.93 -0.39 0.26 16 34 H 0.06 0.67 7.68 -51.93 -0.40 0.27 16 35 H 0.38 2.69 9.12 45.56 0.42 3.11 16 36 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.11 1.01 7.60 -51.93 -0.39 0.61 16 38 H 0.18 2.50 7.39 -52.48 -0.39 2.11 16 39 H 0.09 1.64 7.09 -52.49 -0.37 1.26 16 40 H 0.09 2.09 8.06 -52.49 -0.42 1.67 16 41 H 0.28 6.47 8.30 -40.82 -0.34 6.13 16 42 H 0.12 3.18 6.16 -52.48 -0.32 2.86 16 43 H 0.10 2.33 7.88 -52.49 -0.41 1.92 16 LS Contribution 356.37 15.07 5.37 5.37 Total: -1.00 -31.34 356.37 -6.52 -37.86 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -4.17 Total: 11.01 kcal Atomic # 6 Polarization: -22.24 SS G_CDS: -3.27 Total: -25.51 kcal Atomic # 7 Polarization: -31.78 SS G_CDS: 1.45 Total: -30.34 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: -0.87 Total: -11.40 kcal Atomic # 14 Polarization: 18.04 SS G_CDS: -5.03 Total: 13.01 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.34 -6.52 -37.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254137600.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.629 kcal (2) G-P(sol) polarization free energy of solvation -31.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds