Wall clock time and date at job start Tue Mar 31 2020 11:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47136 * 2 1 4 4 O 1.42900 * 109.47142 * 299.99964 * 3 2 1 5 5 C 1.52999 * 109.46974 * 239.99645 * 2 1 3 6 6 O 1.42902 * 109.47014 * 179.97438 * 5 2 1 7 7 C 1.53000 * 109.47198 * 120.00188 * 2 1 3 8 8 N 1.46506 * 109.47452 * 59.99548 * 7 2 1 9 9 C 1.35081 * 125.71161 * 124.99579 * 8 7 2 10 10 C 1.36913 * 106.00095 * 180.02562 * 9 8 7 11 11 C 1.47972 * 126.95169 * 179.97438 * 10 9 8 12 12 C 1.39960 * 119.88536 * 359.73045 * 11 10 9 13 13 C 1.36235 * 120.11845 * 179.75377 * 12 11 10 14 14 C 1.40940 * 119.87971 * 0.52170 * 13 12 11 15 15 C 1.41011 * 120.12147 * 179.71520 * 14 13 12 16 16 H 1.08002 * 119.99411 * 24.70317 * 15 14 13 17 17 C 1.39947 * 120.00364 * 204.71084 * 15 14 13 18 18 N 1.30834 * 120.00000 * 17.98300 * 17 15 14 19 19 Si 1.86803 * 119.99874 * 197.97824 * 17 15 14 20 20 H 1.48498 * 109.47244 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46839 * 120.00393 * 19 17 15 22 22 H 1.48497 * 109.47077 * 239.99708 * 19 17 15 23 23 C 1.40946 * 119.76524 * 359.73367 * 14 13 12 24 24 C 1.36228 * 119.88252 * 0.02562 * 23 14 13 25 25 N 1.34663 * 106.08948 * 0.02562 * 10 9 8 26 26 N 1.28610 * 108.74781 * 359.97438 * 25 10 9 27 27 H 1.08999 * 109.47124 * 299.99591 * 1 2 3 28 28 H 1.09001 * 109.47031 * 59.99914 * 1 2 3 29 29 H 1.09001 * 109.46979 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46780 * 60.00198 * 3 2 1 31 31 H 1.09001 * 109.47044 * 180.02562 * 3 2 1 32 32 H 0.96694 * 114.00051 * 180.02562 * 4 3 2 33 33 H 1.08995 * 109.47375 * 300.00350 * 5 2 1 34 34 H 1.09001 * 109.46881 * 60.00349 * 5 2 1 35 35 H 0.96704 * 113.99959 * 180.02562 * 6 5 2 36 36 H 1.09003 * 109.46773 * 300.00070 * 7 2 1 37 37 H 1.08990 * 109.47606 * 179.97438 * 7 2 1 38 38 H 1.08005 * 126.99913 * 359.74836 * 9 8 7 39 39 H 1.07992 * 119.93844 * 0.02562 * 12 11 10 40 40 H 1.07997 * 120.05859 * 180.22907 * 13 12 11 41 41 H 0.97000 * 120.00273 * 180.02562 * 18 17 15 42 42 H 1.08006 * 120.06060 * 179.97438 * 23 14 13 43 43 H 1.07993 * 119.94136 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 1.5637 2.1161 -1.1668 5 6 2.0400 -0.7213 -1.2492 6 8 3.4690 -0.7208 -1.2495 7 6 2.0400 -0.7213 1.2492 8 7 1.5516 -2.1025 1.2493 9 6 2.3190 -3.2102 1.3448 10 6 1.4556 -4.2720 1.3041 11 6 1.8074 -5.7076 1.3742 12 6 3.1481 -6.0923 1.4899 13 6 3.4769 -7.4125 1.5599 14 6 2.4650 -8.3920 1.5044 15 6 2.8001 -9.7601 1.5704 16 1 3.7190 -10.0686 2.0467 17 6 1.9422 -10.7181 1.0184 18 7 1.0314 -10.3583 0.1508 19 14 2.0975 -12.5108 1.5203 20 1 3.1965 -12.6547 2.5086 21 1 0.8220 -12.9666 2.1292 22 1 2.3968 -13.3360 0.3226 23 6 1.1169 -7.9992 1.3825 24 6 0.7986 -6.6762 1.3183 25 7 0.2218 -3.7455 1.1862 26 7 0.3204 -2.4636 1.1575 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.6767 1.9562 0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.8493 3.0375 -1.2331 33 1 1.6766 -1.7489 -1.2492 34 1 1.6767 -0.2075 -2.1392 35 1 3.8623 -1.1622 -2.0148 36 1 1.6767 -0.2074 2.1392 37 1 3.1299 -0.7217 1.2491 38 1 3.3948 -3.2501 1.4308 39 1 3.9229 -5.3410 1.5282 40 1 4.5115 -7.7081 1.6529 41 1 0.4365 -11.0222 -0.2315 42 1 0.3377 -8.7458 1.3391 43 1 -0.2341 -6.3742 1.2252 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001254137600.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:34 Heat of formation + Delta-G solvation = -9.550338 kcal Electronic energy + Delta-G solvation = -25970.301671 eV Core-core repulsion = 22209.427473 eV Total energy + Delta-G solvation = -3760.874197 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.06460 -39.89309 -39.32855 -37.12207 -36.30170 -35.65309 -33.71725 -32.92419 -31.45170 -30.50112 -28.43556 -27.45077 -26.94401 -26.79667 -23.86423 -23.40980 -21.93336 -21.70251 -20.15385 -19.25355 -18.65797 -18.23832 -18.16011 -17.33690 -17.10903 -16.42819 -16.21154 -15.92429 -15.74721 -15.51679 -14.93016 -14.82178 -14.58224 -14.31385 -13.97316 -13.90545 -13.66959 -13.58945 -13.26446 -13.15055 -12.94797 -12.78115 -12.55551 -12.39848 -12.28263 -11.97083 -11.77676 -11.57488 -11.44595 -11.21564 -11.16493 -11.05861 -10.85855 -10.80611 -10.38428 -9.44614 -8.92429 -8.65785 -6.31112 0.47753 0.86834 1.22721 1.38506 1.42398 1.50911 1.55734 2.01510 2.20331 2.82656 3.02753 3.28892 3.50779 3.59242 3.69181 3.80160 3.97561 4.12035 4.18553 4.21796 4.34696 4.41370 4.48442 4.51436 4.56143 4.57577 4.68092 4.76951 4.89973 4.99246 5.01734 5.04472 5.14780 5.20387 5.35630 5.42071 5.45005 5.71800 5.85134 6.01297 6.10400 6.23781 6.32771 6.67202 6.71132 6.89508 6.93973 7.01637 7.66651 8.28000 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.033930 B = 0.002465 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.037912 B =11354.439716 C =11564.602369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.067 4.067 3 C 0.100 3.900 4 O -0.587 6.587 5 C 0.096 3.904 6 O -0.574 6.574 7 C 0.121 3.879 8 N -0.272 5.272 9 C -0.051 4.051 10 C 0.042 3.958 11 C -0.161 4.161 12 C -0.056 4.056 13 C -0.239 4.239 14 C 0.088 3.912 15 C -0.484 4.484 16 H 0.085 0.915 17 C 0.032 3.968 18 N -0.817 5.817 19 Si 0.985 3.015 20 H -0.253 1.253 21 H -0.267 1.267 22 H -0.265 1.265 23 C -0.196 4.196 24 C -0.076 4.076 25 N -0.321 5.321 26 N -0.103 5.103 27 H 0.071 0.929 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.399 0.601 33 H 0.013 0.987 34 H 0.054 0.946 35 H 0.396 0.604 36 H 0.121 0.879 37 H 0.135 0.865 38 H 0.219 0.781 39 H 0.133 0.867 40 H 0.112 0.888 41 H 0.290 0.710 42 H 0.099 0.901 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.972 21.720 -0.524 22.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.068 4.068 3 C 0.022 3.978 4 O -0.396 6.396 5 C 0.017 3.983 6 O -0.382 6.382 7 C 0.001 3.999 8 N -0.067 5.067 9 C -0.201 4.201 10 C -0.094 4.094 11 C -0.164 4.164 12 C -0.075 4.075 13 C -0.259 4.259 14 C 0.085 3.915 15 C -0.513 4.513 16 H 0.103 0.897 17 C -0.184 4.184 18 N -0.442 5.442 19 Si 0.806 3.194 20 H -0.176 1.176 21 H -0.192 1.192 22 H -0.189 1.189 23 C -0.215 4.215 24 C -0.096 4.096 25 N -0.187 5.187 26 N -0.081 5.081 27 H 0.090 0.910 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.250 0.750 33 H 0.031 0.969 34 H 0.072 0.928 35 H 0.246 0.754 36 H 0.139 0.861 37 H 0.153 0.847 38 H 0.235 0.765 39 H 0.151 0.849 40 H 0.130 0.870 41 H 0.101 0.899 42 H 0.117 0.883 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 3.950 21.934 -0.374 22.291 hybrid contribution 0.890 -1.162 -0.491 1.544 sum 4.840 20.773 -0.866 21.347 Atomic orbital electron populations 1.22005 0.92736 1.03282 1.02683 1.20857 0.97060 0.95810 0.93044 1.21883 0.98230 0.89295 0.88391 1.86394 1.77846 1.30771 1.44560 1.21914 0.81540 0.97005 0.97808 1.86281 1.18698 1.81980 1.51224 1.22377 1.02422 0.75004 1.00062 1.47169 1.04797 1.09032 1.45659 1.23776 1.00510 0.84405 1.11449 1.20655 0.89291 0.94664 1.04791 1.17337 0.93673 0.87315 1.18072 1.20531 0.93948 0.95687 0.97338 1.20882 0.97981 0.93021 1.13998 1.18074 0.91720 0.94061 0.87612 1.19936 1.06646 0.91620 1.33059 0.89671 1.26903 0.93010 1.06440 0.92089 1.69910 1.15880 1.38697 1.19750 0.85111 0.79602 0.75376 0.79361 1.17620 1.19169 1.18945 1.20919 0.96847 0.94402 1.09379 1.20556 0.97415 0.93107 0.98472 1.75276 1.23351 1.00287 1.19814 1.77905 1.01754 1.07645 1.20783 0.90984 0.92162 0.91921 0.91166 0.91552 0.75022 0.96870 0.92814 0.75438 0.86125 0.84703 0.76470 0.84919 0.87038 0.89935 0.88332 0.89236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.20 7.90 71.98 0.57 -2.63 16 2 C -0.07 -1.18 0.51 -52.18 -0.03 -1.21 16 3 C 0.10 1.19 5.77 71.98 0.42 1.61 16 4 O -0.59 -7.86 12.31 -148.98 -1.83 -9.69 16 5 C 0.10 2.00 5.61 71.98 0.40 2.41 16 6 O -0.57 -9.86 12.31 -148.98 -1.83 -11.69 16 7 C 0.12 2.06 5.28 86.38 0.46 2.52 16 8 N -0.27 -7.46 2.66 -346.60 -0.92 -8.38 16 9 C -0.05 -1.55 10.96 83.88 0.92 -0.63 16 10 C 0.04 1.72 6.98 40.98 0.29 2.01 16 11 C -0.16 -7.41 5.90 -19.86 -0.12 -7.53 16 12 C -0.06 -2.37 9.51 22.22 0.21 -2.16 16 13 C -0.24 -11.36 9.73 22.46 0.22 -11.14 16 14 C 0.09 4.77 5.57 -21.27 -0.12 4.66 16 15 C -0.48 -25.68 9.03 23.36 0.21 -25.47 16 16 H 0.09 4.27 7.91 -2.91 -0.02 4.24 16 17 C 0.03 1.59 5.13 85.26 0.44 2.03 16 18 N -0.82 -43.27 10.96 21.83 0.24 -43.03 16 19 Si 0.99 37.70 29.60 68.60 2.03 39.73 16 20 H -0.25 -9.32 7.11 99.48 0.71 -8.61 16 21 H -0.27 -9.96 7.11 99.48 0.71 -9.25 16 22 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 23 C -0.20 -10.84 8.63 22.46 0.19 -10.64 16 24 C -0.08 -3.94 9.64 22.22 0.21 -3.73 16 25 N -0.32 -13.75 12.15 -49.33 -0.60 -14.35 16 26 N -0.10 -3.61 9.90 37.02 0.37 -3.25 16 27 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.06 1.31 7.68 -2.39 -0.02 1.29 16 29 H 0.06 1.76 5.31 -2.39 -0.01 1.75 16 30 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.07 0.70 7.68 -2.39 -0.02 0.68 16 32 H 0.40 1.64 9.12 -74.06 -0.68 0.97 16 33 H 0.01 0.36 7.60 -2.39 -0.02 0.34 16 34 H 0.05 1.16 7.68 -2.39 -0.02 1.15 16 35 H 0.40 4.49 9.12 -74.05 -0.68 3.82 16 36 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.13 1.72 7.60 -2.39 -0.02 1.70 16 38 H 0.22 4.81 7.39 -2.91 -0.02 4.79 16 39 H 0.13 4.36 7.09 -2.91 -0.02 4.34 16 40 H 0.11 4.80 8.06 -2.91 -0.02 4.78 16 41 H 0.29 13.82 8.30 -92.71 -0.77 13.06 16 42 H 0.10 5.71 6.16 -2.91 -0.02 5.69 16 43 H 0.09 4.62 7.88 -2.91 -0.02 4.60 16 Total: -1.00 -72.29 356.37 1.43 -70.86 By element: Atomic # 1 Polarization: 29.99 SS G_CDS: -0.29 Total: 29.70 kcal Atomic # 6 Polarization: -54.19 SS G_CDS: 4.27 Total: -49.91 kcal Atomic # 7 Polarization: -68.09 SS G_CDS: -0.92 Total: -69.00 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: -3.67 Total: -21.38 kcal Atomic # 14 Polarization: 37.70 SS G_CDS: 2.03 Total: 39.73 kcal Total: -72.29 1.43 -70.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254137600.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.311 kcal (2) G-P(sol) polarization free energy of solvation -72.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds