Wall clock time and date at job start Tue Mar 31 2020 11:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50701 * 119.99961 * 2 1 4 4 N 1.46499 * 109.47244 * 125.00158 * 3 2 1 5 5 C 1.46502 * 119.99746 * 270.00162 * 4 3 2 6 6 C 1.50705 * 109.47105 * 269.99850 * 5 4 3 7 7 H 1.07999 * 119.99873 * 359.97438 * 6 5 4 8 8 C 1.37871 * 119.99887 * 180.02562 * 6 5 4 9 9 N 1.31522 * 120.00291 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 120.00015 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46870 * 359.97438 * 10 8 6 12 12 H 1.48494 * 109.46967 * 119.99960 * 10 8 6 13 13 H 1.48503 * 109.47047 * 240.00220 * 10 8 6 14 14 C 1.34772 * 120.00260 * 89.99822 * 4 3 2 15 15 O 1.21584 * 120.00135 * 179.97438 * 14 4 3 16 16 N 1.34781 * 119.99967 * 0.02562 * 14 4 3 17 17 C 1.39972 * 119.99759 * 184.64757 * 16 14 4 18 18 C 1.38891 * 120.59104 * 145.06699 * 17 16 14 19 19 N 1.31578 * 120.60961 * 180.02562 * 18 17 16 20 20 C 1.32399 * 122.20715 * 0.02784 * 19 18 17 21 21 C 1.37915 * 120.43442 * 359.79995 * 20 19 18 22 22 C 1.38801 * 119.33770 * 0.24783 * 21 20 19 23 23 C 1.50531 * 121.79300 * 180.29950 * 21 20 19 24 24 O 1.42750 * 110.25043 * 344.07377 * 23 21 20 25 25 C 1.43202 * 113.09074 * 51.50524 * 24 23 21 26 26 C 1.50883 * 118.50328 * 179.50148 * 20 19 18 27 27 H 1.07997 * 119.99878 * 179.97438 * 1 2 3 28 28 H 1.08002 * 120.00100 * 0.02562 * 1 2 3 29 29 H 1.08000 * 120.00402 * 180.02562 * 2 1 3 30 30 H 1.09002 * 109.46981 * 5.00031 * 3 2 1 31 31 H 1.09003 * 109.47069 * 245.00373 * 3 2 1 32 32 H 1.09000 * 109.47030 * 29.99948 * 5 4 3 33 33 H 1.09001 * 109.46858 * 149.99951 * 5 4 3 34 34 H 0.96993 * 120.00127 * 180.02562 * 9 8 6 35 35 H 0.97005 * 119.99636 * 4.63861 * 16 14 4 36 36 H 1.07997 * 119.69950 * 0.08257 * 18 17 16 37 37 H 1.07998 * 120.70056 * 179.85262 * 22 21 20 38 38 H 1.08996 * 109.34055 * 104.31297 * 23 21 20 39 39 H 1.09000 * 109.33501 * 223.83561 * 23 21 20 40 40 H 1.09002 * 109.62909 * 169.62451 * 25 24 23 41 41 H 1.09004 * 109.78517 * 49.14965 * 25 24 23 42 42 H 1.09005 * 109.41728 * 283.11309 * 26 20 19 43 43 H 1.08993 * 109.42587 * 42.93369 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5588 1.8649 2.4248 6 6 2.8442 3.3437 2.4804 7 1 3.3040 3.8370 1.6368 8 6 2.5193 4.0665 3.6086 9 7 1.9607 3.4655 4.6365 10 14 2.8736 5.8993 3.6778 11 1 3.5024 6.3303 2.4034 12 1 1.6035 6.6417 3.8796 13 1 3.7973 6.1827 4.8055 14 6 4.2497 0.8662 0.9824 15 8 5.0219 0.8889 1.9212 16 7 4.6500 0.3763 -0.2077 17 6 5.9207 -0.1963 -0.3371 18 6 6.1259 -1.2773 -1.1847 19 7 7.3201 -1.8161 -1.3063 20 6 8.3697 -1.3636 -0.6380 21 6 8.2427 -0.2909 0.2194 22 6 7.0009 0.3082 0.3797 23 6 9.4167 0.2526 0.9890 24 8 10.4892 -0.6894 0.9845 25 6 10.8264 -1.1503 -0.3287 26 6 9.6983 -2.0519 -0.8323 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 1.8501 -0.9353 -0.0004 30 1 1.3585 2.1316 0.0896 31 1 2.6212 1.4026 -0.9314 32 1 1.4887 1.6966 2.5459 33 1 3.0990 1.3603 3.2259 34 1 1.7318 3.9741 5.4300 35 1 4.0573 0.4203 -0.9744 36 1 5.2978 -1.6789 -1.7498 37 1 6.8760 1.1480 1.0472 38 1 9.7509 1.1823 0.5287 39 1 9.1139 0.4500 2.0173 40 1 11.7576 -1.7156 -0.2905 41 1 10.9422 -0.2993 -1.0000 42 1 9.7063 -2.9883 -0.2744 43 1 9.8468 -2.2609 -1.8916 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001310479380.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:06 Heat of formation + Delta-G solvation = -6.031158 kcal Electronic energy + Delta-G solvation = -26293.178818 eV Core-core repulsion = 22532.457224 eV Total energy + Delta-G solvation = -3760.721594 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.00726 -39.72621 -38.08430 -36.01447 -34.87607 -33.22505 -32.89520 -32.25737 -32.01427 -29.38373 -27.47705 -26.07068 -25.62835 -24.33662 -22.93504 -22.80117 -20.82497 -20.13177 -19.48281 -18.04698 -17.21572 -16.76362 -16.60297 -16.44958 -15.95705 -15.33213 -15.04494 -14.96695 -14.73380 -14.51785 -14.22081 -13.94268 -13.52402 -13.23839 -12.98959 -12.87237 -12.76602 -12.35532 -12.16612 -11.92953 -11.86657 -11.38017 -11.19455 -11.07352 -10.93692 -10.67934 -10.50305 -10.25110 -10.14361 -9.72200 -9.64800 -9.38547 -9.29690 -9.03988 -8.48967 -8.16284 -7.73690 -6.09624 -4.14851 1.04797 1.34011 2.32241 3.05463 3.25911 3.33934 3.37409 3.53154 3.68659 3.88701 4.16247 4.30193 4.43197 4.57251 4.63919 4.92291 4.94637 5.05024 5.09822 5.18053 5.24608 5.29006 5.31274 5.39228 5.40938 5.51124 5.53727 5.67793 5.84423 5.89164 6.04605 6.10425 6.24991 6.40208 6.62458 6.70602 6.84369 6.91240 6.94656 7.27225 7.40536 7.55075 7.87313 7.95183 8.16039 8.42767 8.85310 9.08715 9.50652 10.98322 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013052 B = 0.003676 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.798315 B = 7614.264050 C = 9371.828759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.174 4.174 3 C 0.137 3.863 4 N -0.600 5.600 5 C 0.261 3.739 6 C -0.529 4.529 7 H 0.058 0.942 8 C 0.062 3.938 9 N -0.893 5.893 10 Si 0.898 3.102 11 H -0.274 1.274 12 H -0.283 1.283 13 H -0.282 1.282 14 C 0.699 3.301 15 O -0.567 6.567 16 N -0.691 5.691 17 C 0.131 3.869 18 C 0.073 3.927 19 N -0.466 5.466 20 C 0.103 3.897 21 C -0.149 4.149 22 C -0.073 4.073 23 C 0.106 3.894 24 O -0.373 6.373 25 C 0.058 3.942 26 C -0.096 4.096 27 H 0.095 0.905 28 H 0.100 0.900 29 H 0.105 0.895 30 H 0.093 0.907 31 H 0.067 0.933 32 H 0.036 0.964 33 H 0.045 0.955 34 H 0.263 0.737 35 H 0.404 0.596 36 H 0.156 0.844 37 H 0.158 0.842 38 H 0.069 0.931 39 H 0.112 0.888 40 H 0.102 0.898 41 H 0.056 0.944 42 H 0.089 0.911 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.522 -8.727 -14.355 18.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.193 4.193 3 C 0.012 3.988 4 N -0.333 5.333 5 C 0.142 3.858 6 C -0.567 4.567 7 H 0.076 0.924 8 C -0.140 4.140 9 N -0.532 5.532 10 Si 0.726 3.274 11 H -0.198 1.198 12 H -0.209 1.209 13 H -0.208 1.208 14 C 0.401 3.599 15 O -0.443 6.443 16 N -0.341 5.341 17 C 0.032 3.968 18 C -0.090 4.090 19 N -0.174 5.174 20 C -0.034 4.034 21 C -0.152 4.152 22 C -0.101 4.101 23 C 0.029 3.971 24 O -0.291 6.291 25 C -0.019 4.019 26 C -0.133 4.133 27 H 0.113 0.887 28 H 0.118 0.882 29 H 0.123 0.877 30 H 0.111 0.889 31 H 0.085 0.915 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.242 0.758 36 H 0.173 0.827 37 H 0.176 0.824 38 H 0.087 0.913 39 H 0.130 0.870 40 H 0.120 0.880 41 H 0.075 0.925 42 H 0.107 0.893 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 9.109 -9.378 -13.783 18.997 hybrid contribution -0.807 1.781 0.052 1.956 sum 8.301 -7.597 -13.731 17.753 Atomic orbital electron populations 1.23839 0.95797 1.01891 0.99900 1.23428 0.96532 0.98880 1.00480 1.20552 0.93207 0.95849 0.89144 1.47605 1.08633 1.62763 1.14335 1.19272 0.95358 0.93645 0.77514 1.21469 1.40671 0.93293 1.01315 0.92400 1.24924 0.95016 0.98772 0.95290 1.69940 1.41968 1.36114 1.05153 0.86448 0.77948 0.84909 0.78130 1.19850 1.20945 1.20839 1.15952 0.83366 0.78626 0.82004 1.90888 1.52725 1.61380 1.39305 1.42899 1.15204 1.63547 1.12476 1.18539 0.85289 0.94062 0.98893 1.22448 0.95129 0.92001 0.99378 1.67401 0.98750 1.28887 1.22408 1.20679 0.94697 0.94053 0.93967 1.20991 0.96580 0.98186 0.99475 1.21716 0.89519 1.00099 0.98774 1.21391 0.83692 0.90878 1.01162 1.88099 1.51734 1.61617 1.27674 1.22655 0.97233 0.97320 0.84691 1.20949 0.90021 0.99339 1.03039 0.88668 0.88175 0.87742 0.88876 0.91530 0.94649 0.93679 0.92699 0.75829 0.82693 0.82428 0.91342 0.86984 0.87988 0.92527 0.89300 0.89087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.14 14.32 29.01 0.42 -1.72 16 2 C -0.17 -2.31 9.85 -36.03 -0.35 -2.66 16 3 C 0.14 2.06 5.65 -5.19 -0.03 2.03 16 4 N -0.60 -12.11 2.44 -182.18 -0.44 -12.55 16 5 C 0.26 6.61 5.16 -5.19 -0.03 6.58 16 6 C -0.53 -14.50 9.39 -34.44 -0.32 -14.83 16 7 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 8 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 9 N -0.89 -26.01 13.29 55.43 0.74 -25.28 16 10 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 11 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 13 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 14 C 0.70 14.15 8.14 -86.92 -0.71 13.44 16 15 O -0.57 -13.79 13.41 5.29 0.07 -13.72 16 16 N -0.69 -10.58 5.23 -14.15 -0.07 -10.65 16 17 C 0.13 2.00 6.32 -83.57 -0.53 1.48 16 18 C 0.07 0.97 11.13 -17.42 -0.19 0.78 16 19 N -0.47 -6.60 10.22 -9.27 -0.09 -6.70 16 20 C 0.10 1.41 6.68 -82.38 -0.55 0.86 16 21 C -0.15 -2.13 5.80 -104.61 -0.61 -2.74 16 22 C -0.07 -1.18 8.45 -39.05 -0.33 -1.51 16 23 C 0.11 1.31 6.67 35.92 0.24 1.55 16 24 O -0.37 -4.56 10.81 -35.23 -0.38 -4.94 16 25 C 0.06 0.53 6.83 37.13 0.25 0.78 16 26 C -0.10 -0.97 6.24 -27.82 -0.17 -1.15 16 27 H 0.09 1.00 8.06 -52.49 -0.42 0.58 16 28 H 0.10 1.19 7.84 -52.49 -0.41 0.77 16 29 H 0.10 1.34 8.06 -52.49 -0.42 0.92 16 30 H 0.09 1.46 7.72 -51.93 -0.40 1.06 16 31 H 0.07 0.80 6.30 -51.93 -0.33 0.47 16 32 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 33 H 0.05 1.30 7.42 -51.93 -0.39 0.92 16 34 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 35 H 0.40 4.82 6.52 -40.82 -0.27 4.56 16 36 H 0.16 1.61 8.06 -52.49 -0.42 1.19 16 37 H 0.16 2.88 6.31 -52.49 -0.33 2.55 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.11 1.39 8.14 -51.93 -0.42 0.97 16 40 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.46 8.08 -51.93 -0.42 0.04 16 42 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 43 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 361.61 15.07 5.45 5.45 Total: -1.00 -33.42 361.61 -8.66 -42.08 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -5.89 Total: 5.40 kcal Atomic # 6 Polarization: 7.54 SS G_CDS: -3.01 Total: 4.52 kcal Atomic # 7 Polarization: -55.30 SS G_CDS: 0.12 Total: -55.18 kcal Atomic # 8 Polarization: -18.34 SS G_CDS: -0.31 Total: -18.65 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.42 -8.66 -42.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001310479380.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.044 kcal (2) G-P(sol) polarization free energy of solvation -33.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds