Wall clock time and date at job start Tue Mar 31 2020 11:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50701 * 119.99961 * 2 1 4 4 N 1.46499 * 109.47244 * 125.00158 * 3 2 1 5 5 C 1.46502 * 119.99746 * 270.00162 * 4 3 2 6 6 C 1.50705 * 109.47105 * 269.99850 * 5 4 3 7 7 H 1.07999 * 119.99873 * 359.97438 * 6 5 4 8 8 C 1.37871 * 119.99887 * 180.02562 * 6 5 4 9 9 N 1.31522 * 120.00291 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 120.00015 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46870 * 359.97438 * 10 8 6 12 12 H 1.48494 * 109.46967 * 119.99960 * 10 8 6 13 13 H 1.48503 * 109.47047 * 240.00220 * 10 8 6 14 14 C 1.34772 * 120.00260 * 89.99822 * 4 3 2 15 15 O 1.21584 * 120.00135 * 179.97438 * 14 4 3 16 16 N 1.34781 * 119.99967 * 0.02562 * 14 4 3 17 17 C 1.39972 * 119.99759 * 184.64757 * 16 14 4 18 18 C 1.38891 * 120.59104 * 145.06699 * 17 16 14 19 19 N 1.31578 * 120.60961 * 180.02562 * 18 17 16 20 20 C 1.32399 * 122.20715 * 0.02784 * 19 18 17 21 21 C 1.37915 * 120.43442 * 359.79995 * 20 19 18 22 22 C 1.38801 * 119.33770 * 0.24783 * 21 20 19 23 23 C 1.50531 * 121.79300 * 180.29950 * 21 20 19 24 24 O 1.42750 * 110.25043 * 344.07377 * 23 21 20 25 25 C 1.43202 * 113.09074 * 51.50524 * 24 23 21 26 26 C 1.50883 * 118.50328 * 179.50148 * 20 19 18 27 27 H 1.07997 * 119.99878 * 179.97438 * 1 2 3 28 28 H 1.08002 * 120.00100 * 0.02562 * 1 2 3 29 29 H 1.08000 * 120.00402 * 180.02562 * 2 1 3 30 30 H 1.09002 * 109.46981 * 5.00031 * 3 2 1 31 31 H 1.09003 * 109.47069 * 245.00373 * 3 2 1 32 32 H 1.09000 * 109.47030 * 29.99948 * 5 4 3 33 33 H 1.09001 * 109.46858 * 149.99951 * 5 4 3 34 34 H 0.96993 * 120.00127 * 180.02562 * 9 8 6 35 35 H 0.97005 * 119.99636 * 4.63861 * 16 14 4 36 36 H 1.07997 * 119.69950 * 0.08257 * 18 17 16 37 37 H 1.07998 * 120.70056 * 179.85262 * 22 21 20 38 38 H 1.08996 * 109.34055 * 104.31297 * 23 21 20 39 39 H 1.09000 * 109.33501 * 223.83561 * 23 21 20 40 40 H 1.09002 * 109.62909 * 169.62451 * 25 24 23 41 41 H 1.09004 * 109.78517 * 49.14965 * 25 24 23 42 42 H 1.09005 * 109.41728 * 283.11309 * 26 20 19 43 43 H 1.08993 * 109.42587 * 42.93369 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5588 1.8649 2.4248 6 6 2.8442 3.3437 2.4804 7 1 3.3040 3.8370 1.6368 8 6 2.5193 4.0665 3.6086 9 7 1.9607 3.4655 4.6365 10 14 2.8736 5.8993 3.6778 11 1 3.5024 6.3303 2.4034 12 1 1.6035 6.6417 3.8796 13 1 3.7973 6.1827 4.8055 14 6 4.2497 0.8662 0.9824 15 8 5.0219 0.8889 1.9212 16 7 4.6500 0.3763 -0.2077 17 6 5.9207 -0.1963 -0.3371 18 6 6.1259 -1.2773 -1.1847 19 7 7.3201 -1.8161 -1.3063 20 6 8.3697 -1.3636 -0.6380 21 6 8.2427 -0.2909 0.2194 22 6 7.0009 0.3082 0.3797 23 6 9.4167 0.2526 0.9890 24 8 10.4892 -0.6894 0.9845 25 6 10.8264 -1.1503 -0.3287 26 6 9.6983 -2.0519 -0.8323 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 1.8501 -0.9353 -0.0004 30 1 1.3585 2.1316 0.0896 31 1 2.6212 1.4026 -0.9314 32 1 1.4887 1.6966 2.5459 33 1 3.0990 1.3603 3.2259 34 1 1.7318 3.9741 5.4300 35 1 4.0573 0.4203 -0.9744 36 1 5.2978 -1.6789 -1.7498 37 1 6.8760 1.1480 1.0472 38 1 9.7509 1.1823 0.5287 39 1 9.1139 0.4500 2.0173 40 1 11.7576 -1.7156 -0.2905 41 1 10.9422 -0.2993 -1.0000 42 1 9.7063 -2.9883 -0.2744 43 1 9.8468 -2.2609 -1.8916 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001310479380.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:05 Heat of formation + Delta-G solvation = -28.018006 kcal Electronic energy + Delta-G solvation = -26294.132239 eV Core-core repulsion = 22532.457224 eV Total energy + Delta-G solvation = -3761.675015 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.19815 -41.07688 -39.10434 -37.45274 -36.27814 -35.03639 -34.01014 -33.64891 -33.11021 -30.64435 -29.19835 -27.12814 -26.96990 -25.65454 -24.43345 -23.99434 -21.97724 -21.32965 -20.77543 -19.41416 -18.61405 -18.42646 -17.86515 -17.59164 -17.07892 -16.67214 -16.47541 -16.23093 -15.95356 -15.77396 -15.51690 -15.23745 -14.79512 -14.46959 -14.25254 -14.20706 -14.06829 -13.72860 -13.34712 -13.19004 -13.06032 -12.92446 -12.80968 -12.61607 -12.30093 -12.22052 -12.02377 -11.68387 -11.61828 -11.33943 -10.92969 -10.65323 -10.57495 -10.36173 -10.22270 -9.65590 -9.13793 -8.22342 -6.37051 -0.05851 0.16007 1.21933 1.36570 1.39006 1.50275 1.72515 2.07290 2.37890 2.67691 2.83895 2.92720 3.07937 3.30024 3.52646 3.71072 3.84588 3.95092 4.02116 4.18252 4.23420 4.28903 4.30971 4.36006 4.42466 4.62229 4.70849 4.76102 4.79067 4.89124 4.97343 5.03162 5.05065 5.14547 5.20277 5.29084 5.47764 5.68088 5.71811 5.73207 5.87301 5.98860 6.04702 6.06514 6.71940 6.85386 6.94877 7.29710 7.53951 8.84613 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013052 B = 0.003676 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.798315 B = 7614.264050 C = 9371.828759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.188 4.188 3 C 0.133 3.867 4 N -0.605 5.605 5 C 0.281 3.719 6 C -0.541 4.541 7 H 0.054 0.946 8 C 0.010 3.990 9 N -0.927 5.927 10 Si 0.966 3.034 11 H -0.267 1.267 12 H -0.270 1.270 13 H -0.283 1.283 14 C 0.696 3.304 15 O -0.617 6.617 16 N -0.668 5.668 17 C 0.110 3.890 18 C 0.086 3.914 19 N -0.474 5.474 20 C 0.100 3.900 21 C -0.157 4.157 22 C -0.092 4.092 23 C 0.108 3.892 24 O -0.388 6.388 25 C 0.054 3.946 26 C -0.094 4.094 27 H 0.116 0.884 28 H 0.101 0.899 29 H 0.112 0.888 30 H 0.085 0.915 31 H 0.100 0.900 32 H 0.027 0.973 33 H -0.002 1.002 34 H 0.267 0.733 35 H 0.422 0.578 36 H 0.190 0.810 37 H 0.128 0.872 38 H 0.085 0.915 39 H 0.101 0.899 40 H 0.132 0.868 41 H 0.068 0.932 42 H 0.092 0.908 43 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.040 -9.205 -16.858 21.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.207 4.207 3 C 0.011 3.989 4 N -0.338 5.338 5 C 0.159 3.841 6 C -0.580 4.580 7 H 0.072 0.928 8 C -0.189 4.189 9 N -0.567 5.567 10 Si 0.791 3.209 11 H -0.192 1.192 12 H -0.195 1.195 13 H -0.209 1.209 14 C 0.398 3.602 15 O -0.497 6.497 16 N -0.320 5.320 17 C 0.012 3.988 18 C -0.076 4.076 19 N -0.182 5.182 20 C -0.037 4.037 21 C -0.159 4.159 22 C -0.120 4.120 23 C 0.030 3.970 24 O -0.307 6.307 25 C -0.022 4.022 26 C -0.131 4.131 27 H 0.134 0.866 28 H 0.119 0.881 29 H 0.130 0.870 30 H 0.104 0.896 31 H 0.118 0.882 32 H 0.045 0.955 33 H 0.016 0.984 34 H 0.076 0.924 35 H 0.263 0.737 36 H 0.207 0.793 37 H 0.146 0.854 38 H 0.103 0.897 39 H 0.119 0.881 40 H 0.150 0.850 41 H 0.087 0.913 42 H 0.110 0.890 43 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 9.617 -9.881 -16.372 21.405 hybrid contribution -0.943 1.840 0.788 2.213 sum 8.674 -8.041 -15.585 19.565 Atomic orbital electron populations 1.24066 0.95486 1.02987 0.97611 1.23305 0.96894 0.98054 1.02476 1.20814 0.92799 0.96854 0.88456 1.47418 1.09633 1.62619 1.14095 1.18658 0.93906 0.92500 0.78989 1.21729 1.40509 0.94373 1.01375 0.92788 1.25808 0.94688 1.03548 0.94852 1.70055 1.42860 1.37997 1.05769 0.85392 0.78176 0.79261 0.78104 1.19166 1.19469 1.20911 1.16097 0.82877 0.78508 0.82766 1.90858 1.54085 1.63293 1.41453 1.42461 1.15586 1.62615 1.11298 1.18713 0.84689 0.95280 1.00105 1.22910 0.95917 0.90585 0.98195 1.67548 0.99042 1.28937 1.22662 1.21290 0.96095 0.93448 0.92859 1.21177 0.96358 0.98485 0.99916 1.21621 0.91192 1.00113 0.99123 1.21352 0.83470 0.91660 1.00478 1.88082 1.51243 1.61600 1.29771 1.22937 0.97889 0.97914 0.83483 1.21080 0.88360 0.99198 1.04497 0.86610 0.88061 0.87043 0.89647 0.88186 0.95519 0.98363 0.92418 0.73697 0.79284 0.85402 0.89691 0.88138 0.85048 0.91329 0.88973 0.86974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.66 14.32 67.78 0.97 -2.69 16 2 C -0.19 -4.72 9.85 25.65 0.25 -4.47 16 3 C 0.13 3.91 5.65 85.63 0.48 4.39 16 4 N -0.60 -25.03 2.44 -848.55 -2.07 -27.10 16 5 C 0.28 14.88 5.16 85.63 0.44 15.33 16 6 C -0.54 -30.58 9.39 25.60 0.24 -30.34 16 7 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 8 C 0.01 0.58 5.46 84.65 0.46 1.04 16 9 N -0.93 -55.43 13.29 21.45 0.28 -55.15 16 10 Si 0.97 44.36 29.54 68.60 2.03 46.39 16 11 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 12 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 13 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 14 C 0.70 29.07 8.14 179.05 1.46 30.52 16 15 O -0.62 -31.86 13.41 -3.98 -0.05 -31.92 16 16 N -0.67 -20.24 5.23 -316.94 -1.66 -21.90 16 17 C 0.11 3.34 6.32 38.21 0.24 3.58 16 18 C 0.09 2.14 11.13 84.89 0.94 3.08 16 19 N -0.47 -12.44 10.22 -183.25 -1.87 -14.31 16 20 C 0.10 2.58 6.68 42.45 0.28 2.86 16 21 C -0.16 -4.47 5.80 -19.86 -0.12 -4.59 16 22 C -0.09 -3.09 8.45 22.62 0.19 -2.90 16 23 C 0.11 2.68 6.67 71.18 0.47 3.15 16 24 O -0.39 -9.05 10.81 -148.98 -1.61 -10.66 16 25 C 0.05 0.85 6.83 71.96 0.49 1.34 16 26 C -0.09 -1.67 6.24 29.89 0.19 -1.49 16 27 H 0.12 2.12 8.06 -2.91 -0.02 2.10 16 28 H 0.10 2.24 7.84 -2.91 -0.02 2.22 16 29 H 0.11 2.66 8.06 -2.91 -0.02 2.64 16 30 H 0.09 2.64 7.72 -2.39 -0.02 2.62 16 31 H 0.10 2.21 6.30 -2.39 -0.02 2.19 16 32 H 0.03 1.44 8.07 -2.39 -0.02 1.42 16 33 H 0.00 -0.11 7.42 -2.39 -0.02 -0.13 16 34 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 35 H 0.42 9.34 6.52 -92.70 -0.60 8.74 16 36 H 0.19 3.27 8.06 -2.91 -0.02 3.25 16 37 H 0.13 5.07 6.31 -2.91 -0.02 5.05 16 38 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 40 H 0.13 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.07 0.92 8.08 -2.38 -0.02 0.91 16 42 H 0.09 1.63 8.14 -2.38 -0.02 1.61 16 43 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -75.72 361.61 2.48 -73.24 By element: Atomic # 1 Polarization: 22.15 SS G_CDS: 0.42 Total: 22.57 kcal Atomic # 6 Polarization: 11.81 SS G_CDS: 7.01 Total: 18.82 kcal Atomic # 7 Polarization: -113.13 SS G_CDS: -5.32 Total: -118.45 kcal Atomic # 8 Polarization: -40.91 SS G_CDS: -1.66 Total: -42.57 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -75.72 2.48 -73.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001310479380.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.223 kcal (2) G-P(sol) polarization free energy of solvation -75.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds