Wall clock time and date at job start Tue Mar 31 2020 12:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 110.10443 * 2 1 4 4 C 1.53096 * 110.04698 * 238.53591 * 2 1 3 5 5 C 1.44300 * 113.58995 * 156.28565 * 4 2 1 6 6 N 1.49495 * 110.75083 * 59.32833 * 5 4 2 7 7 C 1.34776 * 121.44586 * 98.49817 * 6 5 4 8 8 O 1.21284 * 119.99584 * 0.02562 * 7 6 5 9 9 C 1.50697 * 120.00149 * 180.02562 * 7 6 5 10 10 C 1.52999 * 109.46982 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.47086 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.47437 * 180.02562 * 11 10 9 13 13 C 1.50697 * 109.47333 * 179.97438 * 12 11 10 14 14 H 1.08001 * 119.99994 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00065 * 179.97438 * 13 12 11 16 16 N 1.31518 * 119.99782 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99937 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47240 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.46830 * 120.00487 * 17 15 13 20 20 H 1.48494 * 109.47050 * 240.00159 * 17 15 13 21 21 C 1.42716 * 117.11004 * 278.52851 * 6 5 4 22 22 C 1.56606 * 114.63852 * 103.13884 * 21 6 5 23 23 S 1.78741 * 110.04217 * 121.46089 * 2 1 3 24 24 O 1.42105 * 108.17613 * 327.77947 * 23 2 1 25 25 O 1.42104 * 108.17596 * 97.76407 * 23 2 1 26 26 H 1.08993 * 109.47561 * 298.53839 * 1 2 3 27 27 H 1.09003 * 109.47051 * 58.53874 * 1 2 3 28 28 H 1.09000 * 109.46909 * 178.53643 * 1 2 3 29 29 H 1.09005 * 108.65738 * 277.34672 * 4 2 1 30 30 H 1.09003 * 108.65768 * 35.35353 * 4 2 1 31 31 H 1.08994 * 109.22177 * 179.65525 * 5 4 2 32 32 H 1.09005 * 109.22006 * 299.04751 * 5 4 2 33 33 H 1.08994 * 109.47482 * 300.00566 * 9 7 6 34 34 H 1.09003 * 109.46838 * 60.00456 * 9 7 6 35 35 H 1.09004 * 109.47189 * 299.99944 * 10 9 7 36 36 H 1.08991 * 109.47532 * 60.00125 * 10 9 7 37 37 H 1.09004 * 109.46731 * 299.99821 * 11 10 9 38 38 H 1.09005 * 109.47628 * 59.99876 * 11 10 9 39 39 H 1.08996 * 109.46656 * 299.99722 * 12 11 10 40 40 H 1.09005 * 109.46880 * 59.99336 * 12 11 10 41 41 H 0.97000 * 119.99719 * 180.02562 * 16 15 13 42 42 H 1.09001 * 108.45377 * 224.53572 * 21 6 5 43 43 H 1.08996 * 108.45723 * 341.88078 * 21 6 5 44 44 H 1.08996 * 109.74762 * 200.93316 * 22 21 6 45 45 H 1.09000 * 109.61813 * 80.34150 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9047 1.0237 0.0000 4 6 2.0548 -0.7507 -1.2267 5 6 3.3901 -0.3636 -1.6131 6 7 4.3560 -0.6089 -0.4987 7 6 5.1266 -1.7141 -0.4666 8 8 5.0454 -2.5359 -1.3549 9 6 6.0890 -1.9289 0.6729 10 6 6.8356 -3.2485 0.4680 11 6 7.8124 -3.4669 1.6253 12 6 8.5595 -4.7862 1.4201 13 6 9.5219 -5.0010 2.5597 14 1 9.5939 -4.2694 3.3509 15 6 10.3106 -6.1314 2.5922 16 7 10.2233 -7.0221 1.6284 17 14 11.5042 -6.3973 4.0044 18 1 11.4117 -5.2576 4.9519 19 1 11.1615 -7.6574 4.7115 20 1 12.8876 -6.4885 3.4726 21 6 4.4262 0.3778 0.5301 22 6 3.6983 -0.0132 1.8604 23 16 2.1425 -0.8764 1.4323 24 8 1.2214 -0.6840 2.4972 25 8 2.4658 -2.2022 1.0360 26 1 -0.3634 0.4909 0.9027 27 1 -0.3633 0.5364 -0.8766 28 1 -0.3633 -1.0273 -0.0262 29 1 2.0502 -1.8190 -1.0101 30 1 1.3830 -0.5627 -2.0643 31 1 3.6936 -0.9429 -2.4850 32 1 3.3972 0.6966 -1.8664 33 1 6.8050 -1.1077 0.7035 34 1 5.5375 -1.9651 1.6124 35 1 6.1198 -4.0700 0.4373 36 1 7.3872 -3.2119 -0.4713 37 1 8.5282 -2.6455 1.6564 38 1 7.2605 -3.5037 2.5646 39 1 7.8439 -5.6078 1.3887 40 1 9.1114 -4.7490 0.4809 41 1 10.7779 -7.8175 1.6515 42 1 5.4757 0.5692 0.7536 43 1 3.9836 1.3002 0.1543 44 1 3.4739 0.8853 2.4352 45 1 4.3365 -0.6749 2.4460 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323359592.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:19 Heat of formation + Delta-G solvation = -116.962948 kcal Electronic energy + Delta-G solvation = -25642.687373 eV Core-core repulsion = 21980.306615 eV Total energy + Delta-G solvation = -3662.380757 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 2.46 seconds Orbital eigenvalues (eV) -40.53685 -37.73265 -37.04770 -36.30445 -35.31890 -34.85618 -32.63392 -31.74498 -30.20551 -29.27805 -25.88495 -24.72124 -24.29100 -22.88228 -21.59663 -19.98092 -19.34011 -18.87319 -17.92504 -17.28768 -16.54189 -16.22488 -16.08133 -15.97262 -15.69682 -14.87393 -14.47017 -14.42950 -14.14299 -14.11047 -13.92129 -13.39599 -13.31965 -12.81414 -12.64630 -12.56699 -12.37490 -12.20907 -12.07725 -12.02429 -11.93457 -11.63414 -11.57127 -11.13104 -11.04092 -10.96038 -10.68288 -10.47777 -10.46356 -10.38261 -9.82815 -9.58042 -9.21801 -9.19358 -8.94370 -8.27942 -5.92569 -3.94908 -0.36392 2.41611 2.49133 2.65726 3.27708 3.35014 3.42090 3.45967 3.51632 3.85905 3.98075 4.10193 4.33182 4.44927 4.50659 4.54998 4.68315 4.81051 4.98765 5.03574 5.05780 5.10431 5.15200 5.24010 5.30065 5.40839 5.43089 5.46693 5.53469 5.71647 5.83785 6.02470 6.16334 6.32407 6.57301 6.87364 7.03055 7.12346 7.24304 7.77553 7.93804 8.08735 8.10397 8.50845 9.13026 9.68598 11.18841 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.024374 B = 0.002758 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.494712 B =10148.875010 C =10620.657855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.586 4.586 3 H 0.138 0.862 4 C -0.141 4.141 5 C 0.108 3.892 6 N -0.639 5.639 7 C 0.529 3.471 8 O -0.513 6.513 9 C -0.141 4.141 10 C -0.105 4.105 11 C -0.110 4.110 12 C 0.019 3.981 13 C -0.519 4.519 14 H 0.054 0.946 15 C 0.055 3.945 16 N -0.895 5.895 17 Si 0.891 3.109 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.285 1.285 21 C 0.118 3.882 22 C -0.630 4.630 23 S 2.415 3.585 24 O -0.946 6.946 25 O -0.919 6.919 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.067 0.933 29 H 0.104 0.896 30 H 0.099 0.901 31 H 0.104 0.896 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.046 0.954 38 H 0.047 0.953 39 H 0.017 0.983 40 H 0.016 0.984 41 H 0.259 0.741 42 H 0.095 0.905 43 H 0.094 0.906 44 H 0.145 0.855 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.736 23.050 -5.218 30.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.695 4.695 3 H 0.156 0.844 4 C -0.180 4.180 5 C -0.013 4.013 6 N -0.376 5.376 7 C 0.319 3.681 8 O -0.385 6.385 9 C -0.180 4.180 10 C -0.143 4.143 11 C -0.148 4.148 12 C -0.018 4.018 13 C -0.557 4.557 14 H 0.073 0.927 15 C -0.146 4.146 16 N -0.534 5.534 17 Si 0.719 3.281 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.211 1.211 21 C -0.009 4.009 22 C -0.760 4.760 23 S 2.596 3.404 24 O -0.943 6.943 25 O -0.916 6.916 26 H 0.098 0.902 27 H 0.098 0.902 28 H 0.086 0.914 29 H 0.123 0.877 30 H 0.118 0.882 31 H 0.122 0.878 32 H 0.099 0.901 33 H 0.110 0.890 34 H 0.108 0.892 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.035 0.965 40 H 0.034 0.966 41 H 0.069 0.931 42 H 0.113 0.887 43 H 0.112 0.888 44 H 0.163 0.837 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -20.052 21.685 -5.379 30.021 hybrid contribution 0.998 0.609 0.597 1.313 sum -19.054 22.294 -4.781 29.714 Atomic orbital electron populations 1.21509 0.88953 1.03901 1.04471 1.29864 1.07582 1.13729 1.18344 0.84376 1.20416 0.97687 1.02920 0.96930 1.20479 0.87341 1.02266 0.91179 1.48263 1.42177 1.23165 1.23994 1.21047 0.79931 0.79366 0.87722 1.90697 1.66840 1.42205 1.38797 1.21909 0.97539 1.02096 0.96470 1.21488 0.98363 0.94091 1.00383 1.21654 0.96664 1.00749 0.95721 1.19102 0.94720 0.91013 0.96946 1.21317 1.21140 1.05445 1.07827 0.92729 1.25046 0.97352 0.96171 0.96046 1.69989 1.40305 1.10677 1.32474 0.86559 0.80983 0.78045 0.82534 1.19800 1.21054 1.21081 1.20970 1.03256 0.91591 0.85070 1.31617 1.21186 1.15734 1.07508 1.08235 0.77595 0.77716 0.76842 1.93557 1.60968 1.86707 1.53078 1.93638 1.83821 1.31643 1.82487 0.90242 0.90178 0.91355 0.87730 0.88245 0.87767 0.90106 0.88964 0.89235 0.91408 0.91699 0.93515 0.93459 0.96487 0.96573 0.93112 0.88655 0.88771 0.83679 0.83968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 63. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.71 8.75 37.16 0.33 -0.38 16 2 C -0.59 -3.27 2.63 -26.68 -0.07 -3.34 16 3 H 0.14 0.28 6.91 -51.81 -0.36 -0.08 16 4 C -0.14 -0.95 4.63 -30.73 -0.14 -1.10 16 5 C 0.11 0.76 5.45 -6.42 -0.04 0.72 16 6 N -0.64 -5.84 1.88 -176.51 -0.33 -6.17 16 7 C 0.53 7.38 7.14 -10.99 -0.08 7.30 16 8 O -0.51 -9.26 15.62 5.55 0.09 -9.17 16 9 C -0.14 -1.93 4.44 -27.88 -0.12 -2.05 16 10 C -0.11 -1.94 4.50 -26.73 -0.12 -2.06 16 11 C -0.11 -2.31 5.15 -26.73 -0.14 -2.45 16 12 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 13 C -0.52 -15.12 9.11 -34.44 -0.31 -15.44 16 14 H 0.05 1.53 7.74 -52.49 -0.41 1.13 16 15 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 16 N -0.89 -27.82 13.29 55.43 0.74 -27.08 16 17 Si 0.89 22.12 29.54 -169.99 -5.02 17.10 16 18 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 20 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 21 C 0.12 0.64 4.65 -4.09 -0.02 0.62 16 22 C -0.63 -3.72 6.78 39.10 0.27 -3.45 16 23 S 2.42 22.27 4.66 -107.50 -0.50 21.77 16 24 O -0.95 -11.47 17.15 -57.88 -0.99 -12.46 16 25 O -0.92 -12.74 15.08 -57.88 -0.87 -13.61 16 26 H 0.08 0.43 7.75 -51.93 -0.40 0.03 16 27 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 28 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.10 1.06 6.31 -51.93 -0.33 0.73 16 30 H 0.10 0.46 7.89 -51.93 -0.41 0.05 16 31 H 0.10 0.90 7.36 -51.93 -0.38 0.52 16 32 H 0.08 0.29 7.80 -51.93 -0.40 -0.12 16 33 H 0.09 1.01 7.55 -51.93 -0.39 0.62 16 34 H 0.09 1.10 6.36 -51.93 -0.33 0.77 16 35 H 0.07 1.37 8.10 -51.93 -0.42 0.95 16 36 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 37 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 42 H 0.10 0.45 7.11 -51.93 -0.37 0.08 16 43 H 0.09 0.16 6.71 -51.93 -0.35 -0.18 16 44 H 0.14 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.14 0.92 6.59 -51.93 -0.34 0.58 16 LS Contribution 359.80 15.07 5.42 5.42 Total: -1.00 -39.67 359.80 -9.57 -49.24 By element: Atomic # 1 Polarization: 2.10 SS G_CDS: -7.41 Total: -5.30 kcal Atomic # 6 Polarization: -19.04 SS G_CDS: -0.69 Total: -19.73 kcal Atomic # 7 Polarization: -33.65 SS G_CDS: 0.41 Total: -33.25 kcal Atomic # 8 Polarization: -33.47 SS G_CDS: -1.78 Total: -35.24 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Atomic # 16 Polarization: 22.27 SS G_CDS: -0.50 Total: 21.77 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -39.67 -9.57 -49.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323359592.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.724 kcal (2) G-P(sol) polarization free energy of solvation -39.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.46 seconds