Wall clock time and date at job start Tue Mar 31 2020 12:58:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.09007 * 110.10443 * 2 1
4 4 C 1.53096 * 110.04698 * 238.53591 * 2 1 3
5 5 C 1.44300 * 113.58995 * 156.28565 * 4 2 1
6 6 N 1.49495 * 110.75083 * 59.32833 * 5 4 2
7 7 C 1.34776 * 121.44586 * 98.49817 * 6 5 4
8 8 O 1.21284 * 119.99584 * 0.02562 * 7 6 5
9 9 C 1.50697 * 120.00149 * 180.02562 * 7 6 5
10 10 C 1.52999 * 109.46982 * 180.02562 * 9 7 6
11 11 C 1.53002 * 109.47086 * 180.02562 * 10 9 7
12 12 C 1.53002 * 109.47437 * 180.02562 * 11 10 9
13 13 C 1.50697 * 109.47333 * 179.97438 * 12 11 10
14 14 H 1.08001 * 119.99994 * 359.97438 * 13 12 11
15 15 C 1.37877 * 120.00065 * 179.97438 * 13 12 11
16 16 N 1.31518 * 119.99782 * 0.02562 * 15 13 12
17 17 Si 1.86801 * 119.99937 * 179.97438 * 15 13 12
18 18 H 1.48498 * 109.47240 * 0.02562 * 17 15 13
19 19 H 1.48502 * 109.46830 * 120.00487 * 17 15 13
20 20 H 1.48494 * 109.47050 * 240.00159 * 17 15 13
21 21 C 1.42716 * 117.11004 * 278.52851 * 6 5 4
22 22 C 1.56606 * 114.63852 * 103.13884 * 21 6 5
23 23 S 1.78741 * 110.04217 * 121.46089 * 2 1 3
24 24 O 1.42105 * 108.17613 * 327.77947 * 23 2 1
25 25 O 1.42104 * 108.17596 * 97.76407 * 23 2 1
26 26 H 1.08993 * 109.47561 * 298.53839 * 1 2 3
27 27 H 1.09003 * 109.47051 * 58.53874 * 1 2 3
28 28 H 1.09000 * 109.46909 * 178.53643 * 1 2 3
29 29 H 1.09005 * 108.65738 * 277.34672 * 4 2 1
30 30 H 1.09003 * 108.65768 * 35.35353 * 4 2 1
31 31 H 1.08994 * 109.22177 * 179.65525 * 5 4 2
32 32 H 1.09005 * 109.22006 * 299.04751 * 5 4 2
33 33 H 1.08994 * 109.47482 * 300.00566 * 9 7 6
34 34 H 1.09003 * 109.46838 * 60.00456 * 9 7 6
35 35 H 1.09004 * 109.47189 * 299.99944 * 10 9 7
36 36 H 1.08991 * 109.47532 * 60.00125 * 10 9 7
37 37 H 1.09004 * 109.46731 * 299.99821 * 11 10 9
38 38 H 1.09005 * 109.47628 * 59.99876 * 11 10 9
39 39 H 1.08996 * 109.46656 * 299.99722 * 12 11 10
40 40 H 1.09005 * 109.46880 * 59.99336 * 12 11 10
41 41 H 0.97000 * 119.99719 * 180.02562 * 16 15 13
42 42 H 1.09001 * 108.45377 * 224.53572 * 21 6 5
43 43 H 1.08996 * 108.45723 * 341.88078 * 21 6 5
44 44 H 1.08996 * 109.74762 * 200.93316 * 22 21 6
45 45 H 1.09000 * 109.61813 * 80.34150 * 22 21 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9047 1.0237 0.0000
4 6 2.0548 -0.7507 -1.2267
5 6 3.3901 -0.3636 -1.6131
6 7 4.3560 -0.6089 -0.4987
7 6 5.1266 -1.7141 -0.4666
8 8 5.0454 -2.5359 -1.3549
9 6 6.0890 -1.9289 0.6729
10 6 6.8356 -3.2485 0.4680
11 6 7.8124 -3.4669 1.6253
12 6 8.5595 -4.7862 1.4201
13 6 9.5219 -5.0010 2.5597
14 1 9.5939 -4.2694 3.3509
15 6 10.3106 -6.1314 2.5922
16 7 10.2233 -7.0221 1.6284
17 14 11.5042 -6.3973 4.0044
18 1 11.4117 -5.2576 4.9519
19 1 11.1615 -7.6574 4.7115
20 1 12.8876 -6.4885 3.4726
21 6 4.4262 0.3778 0.5301
22 6 3.6983 -0.0132 1.8604
23 16 2.1425 -0.8764 1.4323
24 8 1.2214 -0.6840 2.4972
25 8 2.4658 -2.2022 1.0360
26 1 -0.3634 0.4909 0.9027
27 1 -0.3633 0.5364 -0.8766
28 1 -0.3633 -1.0273 -0.0262
29 1 2.0502 -1.8190 -1.0101
30 1 1.3830 -0.5627 -2.0643
31 1 3.6936 -0.9429 -2.4850
32 1 3.3972 0.6966 -1.8664
33 1 6.8050 -1.1077 0.7035
34 1 5.5375 -1.9651 1.6124
35 1 6.1198 -4.0700 0.4373
36 1 7.3872 -3.2119 -0.4713
37 1 8.5282 -2.6455 1.6564
38 1 7.2605 -3.5037 2.5646
39 1 7.8439 -5.6078 1.3887
40 1 9.1114 -4.7490 0.4809
41 1 10.7779 -7.8175 1.6515
42 1 5.4757 0.5692 0.7536
43 1 3.9836 1.3002 0.1543
44 1 3.4739 0.8853 2.4352
45 1 4.3365 -0.6749 2.4460
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001323359592.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:58:19
Heat of formation + Delta-G solvation = -116.962948 kcal
Electronic energy + Delta-G solvation = -25642.687373 eV
Core-core repulsion = 21980.306615 eV
Total energy + Delta-G solvation = -3662.380757 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 317.149 amu
Computer time = 2.46 seconds
Orbital eigenvalues (eV)
-40.53685 -37.73265 -37.04770 -36.30445 -35.31890 -34.85618 -32.63392 -31.74498
-30.20551 -29.27805 -25.88495 -24.72124 -24.29100 -22.88228 -21.59663 -19.98092
-19.34011 -18.87319 -17.92504 -17.28768 -16.54189 -16.22488 -16.08133 -15.97262
-15.69682 -14.87393 -14.47017 -14.42950 -14.14299 -14.11047 -13.92129 -13.39599
-13.31965 -12.81414 -12.64630 -12.56699 -12.37490 -12.20907 -12.07725 -12.02429
-11.93457 -11.63414 -11.57127 -11.13104 -11.04092 -10.96038 -10.68288 -10.47777
-10.46356 -10.38261 -9.82815 -9.58042 -9.21801 -9.19358 -8.94370 -8.27942
-5.92569 -3.94908 -0.36392 2.41611 2.49133 2.65726 3.27708 3.35014
3.42090 3.45967 3.51632 3.85905 3.98075 4.10193 4.33182 4.44927
4.50659 4.54998 4.68315 4.81051 4.98765 5.03574 5.05780 5.10431
5.15200 5.24010 5.30065 5.40839 5.43089 5.46693 5.53469 5.71647
5.83785 6.02470 6.16334 6.32407 6.57301 6.87364 7.03055 7.12346
7.24304 7.77553 7.93804 8.08735 8.10397 8.50845 9.13026 9.68598
11.18841
Molecular weight = 317.15amu
Principal moments of inertia in cm(-1)
A = 0.024374 B = 0.002758 C = 0.002636
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1148.494712 B =10148.875010 C =10620.657855
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.130 4.130
2 C -0.586 4.586
3 H 0.138 0.862
4 C -0.141 4.141
5 C 0.108 3.892
6 N -0.639 5.639
7 C 0.529 3.471
8 O -0.513 6.513
9 C -0.141 4.141
10 C -0.105 4.105
11 C -0.110 4.110
12 C 0.019 3.981
13 C -0.519 4.519
14 H 0.054 0.946
15 C 0.055 3.945
16 N -0.895 5.895
17 Si 0.891 3.109
18 H -0.273 1.273
19 H -0.284 1.284
20 H -0.285 1.285
21 C 0.118 3.882
22 C -0.630 4.630
23 S 2.415 3.585
24 O -0.946 6.946
25 O -0.919 6.919
26 H 0.079 0.921
27 H 0.079 0.921
28 H 0.067 0.933
29 H 0.104 0.896
30 H 0.099 0.901
31 H 0.104 0.896
32 H 0.081 0.919
33 H 0.092 0.908
34 H 0.089 0.911
35 H 0.067 0.933
36 H 0.064 0.936
37 H 0.046 0.954
38 H 0.047 0.953
39 H 0.017 0.983
40 H 0.016 0.984
41 H 0.259 0.741
42 H 0.095 0.905
43 H 0.094 0.906
44 H 0.145 0.855
45 H 0.142 0.858
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -19.736 23.050 -5.218 30.790
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.188 4.188
2 C -0.695 4.695
3 H 0.156 0.844
4 C -0.180 4.180
5 C -0.013 4.013
6 N -0.376 5.376
7 C 0.319 3.681
8 O -0.385 6.385
9 C -0.180 4.180
10 C -0.143 4.143
11 C -0.148 4.148
12 C -0.018 4.018
13 C -0.557 4.557
14 H 0.073 0.927
15 C -0.146 4.146
16 N -0.534 5.534
17 Si 0.719 3.281
18 H -0.198 1.198
19 H -0.211 1.211
20 H -0.211 1.211
21 C -0.009 4.009
22 C -0.760 4.760
23 S 2.596 3.404
24 O -0.943 6.943
25 O -0.916 6.916
26 H 0.098 0.902
27 H 0.098 0.902
28 H 0.086 0.914
29 H 0.123 0.877
30 H 0.118 0.882
31 H 0.122 0.878
32 H 0.099 0.901
33 H 0.110 0.890
34 H 0.108 0.892
35 H 0.086 0.914
36 H 0.083 0.917
37 H 0.065 0.935
38 H 0.065 0.935
39 H 0.035 0.965
40 H 0.034 0.966
41 H 0.069 0.931
42 H 0.113 0.887
43 H 0.112 0.888
44 H 0.163 0.837
45 H 0.160 0.840
Dipole moment (debyes) X Y Z Total
from point charges -20.052 21.685 -5.379 30.021
hybrid contribution 0.998 0.609 0.597 1.313
sum -19.054 22.294 -4.781 29.714
Atomic orbital electron populations
1.21509 0.88953 1.03901 1.04471 1.29864 1.07582 1.13729 1.18344
0.84376 1.20416 0.97687 1.02920 0.96930 1.20479 0.87341 1.02266
0.91179 1.48263 1.42177 1.23165 1.23994 1.21047 0.79931 0.79366
0.87722 1.90697 1.66840 1.42205 1.38797 1.21909 0.97539 1.02096
0.96470 1.21488 0.98363 0.94091 1.00383 1.21654 0.96664 1.00749
0.95721 1.19102 0.94720 0.91013 0.96946 1.21317 1.21140 1.05445
1.07827 0.92729 1.25046 0.97352 0.96171 0.96046 1.69989 1.40305
1.10677 1.32474 0.86559 0.80983 0.78045 0.82534 1.19800 1.21054
1.21081 1.20970 1.03256 0.91591 0.85070 1.31617 1.21186 1.15734
1.07508 1.08235 0.77595 0.77716 0.76842 1.93557 1.60968 1.86707
1.53078 1.93638 1.83821 1.31643 1.82487 0.90242 0.90178 0.91355
0.87730 0.88245 0.87767 0.90106 0.88964 0.89235 0.91408 0.91699
0.93515 0.93459 0.96487 0.96573 0.93112 0.88655 0.88771 0.83679
0.83968
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 63.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -0.71 8.75 37.16 0.33 -0.38 16
2 C -0.59 -3.27 2.63 -26.68 -0.07 -3.34 16
3 H 0.14 0.28 6.91 -51.81 -0.36 -0.08 16
4 C -0.14 -0.95 4.63 -30.73 -0.14 -1.10 16
5 C 0.11 0.76 5.45 -6.42 -0.04 0.72 16
6 N -0.64 -5.84 1.88 -176.51 -0.33 -6.17 16
7 C 0.53 7.38 7.14 -10.99 -0.08 7.30 16
8 O -0.51 -9.26 15.62 5.55 0.09 -9.17 16
9 C -0.14 -1.93 4.44 -27.88 -0.12 -2.05 16
10 C -0.11 -1.94 4.50 -26.73 -0.12 -2.06 16
11 C -0.11 -2.31 5.15 -26.73 -0.14 -2.45 16
12 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16
13 C -0.52 -15.12 9.11 -34.44 -0.31 -15.44 16
14 H 0.05 1.53 7.74 -52.49 -0.41 1.13 16
15 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16
16 N -0.89 -27.82 13.29 55.43 0.74 -27.08 16
17 Si 0.89 22.12 29.54 -169.99 -5.02 17.10 16
18 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16
19 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16
20 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16
21 C 0.12 0.64 4.65 -4.09 -0.02 0.62 16
22 C -0.63 -3.72 6.78 39.10 0.27 -3.45 16
23 S 2.42 22.27 4.66 -107.50 -0.50 21.77 16
24 O -0.95 -11.47 17.15 -57.88 -0.99 -12.46 16
25 O -0.92 -12.74 15.08 -57.88 -0.87 -13.61 16
26 H 0.08 0.43 7.75 -51.93 -0.40 0.03 16
27 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16
28 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16
29 H 0.10 1.06 6.31 -51.93 -0.33 0.73 16
30 H 0.10 0.46 7.89 -51.93 -0.41 0.05 16
31 H 0.10 0.90 7.36 -51.93 -0.38 0.52 16
32 H 0.08 0.29 7.80 -51.93 -0.40 -0.12 16
33 H 0.09 1.01 7.55 -51.93 -0.39 0.62 16
34 H 0.09 1.10 6.36 -51.93 -0.33 0.77 16
35 H 0.07 1.37 8.10 -51.93 -0.42 0.95 16
36 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16
37 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16
38 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16
39 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16
40 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16
41 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16
42 H 0.10 0.45 7.11 -51.93 -0.37 0.08 16
43 H 0.09 0.16 6.71 -51.93 -0.35 -0.18 16
44 H 0.14 0.39 8.14 -51.93 -0.42 -0.03 16
45 H 0.14 0.92 6.59 -51.93 -0.34 0.58 16
LS Contribution 359.80 15.07 5.42 5.42
Total: -1.00 -39.67 359.80 -9.57 -49.24
By element:
Atomic # 1 Polarization: 2.10 SS G_CDS: -7.41 Total: -5.30 kcal
Atomic # 6 Polarization: -19.04 SS G_CDS: -0.69 Total: -19.73 kcal
Atomic # 7 Polarization: -33.65 SS G_CDS: 0.41 Total: -33.25 kcal
Atomic # 8 Polarization: -33.47 SS G_CDS: -1.78 Total: -35.24 kcal
Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal
Atomic # 16 Polarization: 22.27 SS G_CDS: -0.50 Total: 21.77 kcal
Total LS contribution 5.42 Total: 5.42 kcal
Total: -39.67 -9.57 -49.24 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001323359592.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -67.724 kcal
(2) G-P(sol) polarization free energy of solvation -39.669 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.394 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.569 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.239 kcal
(6) G-S(sol) free energy of system = (1) + (5) -116.963 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 2.46 seconds