Wall clock time and date at job start Tue Mar 31 2020 12:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 110.10443 * 2 1 4 4 C 1.53096 * 110.04698 * 238.53591 * 2 1 3 5 5 C 1.44300 * 113.58995 * 156.28565 * 4 2 1 6 6 N 1.49495 * 110.75083 * 59.32833 * 5 4 2 7 7 C 1.34776 * 121.44586 * 98.49817 * 6 5 4 8 8 O 1.21284 * 119.99584 * 0.02562 * 7 6 5 9 9 C 1.50697 * 120.00149 * 180.02562 * 7 6 5 10 10 C 1.52999 * 109.46982 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.47086 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.47437 * 180.02562 * 11 10 9 13 13 C 1.50697 * 109.47333 * 179.97438 * 12 11 10 14 14 H 1.08001 * 119.99994 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00065 * 179.97438 * 13 12 11 16 16 N 1.31518 * 119.99782 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99937 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47240 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.46830 * 120.00487 * 17 15 13 20 20 H 1.48494 * 109.47050 * 240.00159 * 17 15 13 21 21 C 1.42716 * 117.11004 * 278.52851 * 6 5 4 22 22 C 1.56606 * 114.63852 * 103.13884 * 21 6 5 23 23 S 1.78741 * 110.04217 * 121.46089 * 2 1 3 24 24 O 1.42105 * 108.17613 * 327.77947 * 23 2 1 25 25 O 1.42104 * 108.17596 * 97.76407 * 23 2 1 26 26 H 1.08993 * 109.47561 * 298.53839 * 1 2 3 27 27 H 1.09003 * 109.47051 * 58.53874 * 1 2 3 28 28 H 1.09000 * 109.46909 * 178.53643 * 1 2 3 29 29 H 1.09005 * 108.65738 * 277.34672 * 4 2 1 30 30 H 1.09003 * 108.65768 * 35.35353 * 4 2 1 31 31 H 1.08994 * 109.22177 * 179.65525 * 5 4 2 32 32 H 1.09005 * 109.22006 * 299.04751 * 5 4 2 33 33 H 1.08994 * 109.47482 * 300.00566 * 9 7 6 34 34 H 1.09003 * 109.46838 * 60.00456 * 9 7 6 35 35 H 1.09004 * 109.47189 * 299.99944 * 10 9 7 36 36 H 1.08991 * 109.47532 * 60.00125 * 10 9 7 37 37 H 1.09004 * 109.46731 * 299.99821 * 11 10 9 38 38 H 1.09005 * 109.47628 * 59.99876 * 11 10 9 39 39 H 1.08996 * 109.46656 * 299.99722 * 12 11 10 40 40 H 1.09005 * 109.46880 * 59.99336 * 12 11 10 41 41 H 0.97000 * 119.99719 * 180.02562 * 16 15 13 42 42 H 1.09001 * 108.45377 * 224.53572 * 21 6 5 43 43 H 1.08996 * 108.45723 * 341.88078 * 21 6 5 44 44 H 1.08996 * 109.74762 * 200.93316 * 22 21 6 45 45 H 1.09000 * 109.61813 * 80.34150 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9047 1.0237 0.0000 4 6 2.0548 -0.7507 -1.2267 5 6 3.3901 -0.3636 -1.6131 6 7 4.3560 -0.6089 -0.4987 7 6 5.1266 -1.7141 -0.4666 8 8 5.0454 -2.5359 -1.3549 9 6 6.0890 -1.9289 0.6729 10 6 6.8356 -3.2485 0.4680 11 6 7.8124 -3.4669 1.6253 12 6 8.5595 -4.7862 1.4201 13 6 9.5219 -5.0010 2.5597 14 1 9.5939 -4.2694 3.3509 15 6 10.3106 -6.1314 2.5922 16 7 10.2233 -7.0221 1.6284 17 14 11.5042 -6.3973 4.0044 18 1 11.4117 -5.2576 4.9519 19 1 11.1615 -7.6574 4.7115 20 1 12.8876 -6.4885 3.4726 21 6 4.4262 0.3778 0.5301 22 6 3.6983 -0.0132 1.8604 23 16 2.1425 -0.8764 1.4323 24 8 1.2214 -0.6840 2.4972 25 8 2.4658 -2.2022 1.0360 26 1 -0.3634 0.4909 0.9027 27 1 -0.3633 0.5364 -0.8766 28 1 -0.3633 -1.0273 -0.0262 29 1 2.0502 -1.8190 -1.0101 30 1 1.3830 -0.5627 -2.0643 31 1 3.6936 -0.9429 -2.4850 32 1 3.3972 0.6966 -1.8664 33 1 6.8050 -1.1077 0.7035 34 1 5.5375 -1.9651 1.6124 35 1 6.1198 -4.0700 0.4373 36 1 7.3872 -3.2119 -0.4713 37 1 8.5282 -2.6455 1.6564 38 1 7.2605 -3.5037 2.5646 39 1 7.8439 -5.6078 1.3887 40 1 9.1114 -4.7490 0.4809 41 1 10.7779 -7.8175 1.6515 42 1 5.4757 0.5692 0.7536 43 1 3.9836 1.3002 0.1543 44 1 3.4739 0.8853 2.4352 45 1 4.3365 -0.6749 2.4460 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323359592.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:18 Heat of formation + Delta-G solvation = -146.692253 kcal Electronic energy + Delta-G solvation = -25643.976532 eV Core-core repulsion = 21980.306615 eV Total energy + Delta-G solvation = -3663.669917 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.37278 -38.58553 -37.80093 -37.08243 -36.64781 -35.90094 -34.59632 -32.37733 -31.51376 -30.29083 -27.57108 -25.27646 -25.18775 -24.04927 -22.71960 -21.69299 -20.15486 -19.54625 -18.60458 -18.45680 -18.05033 -17.22249 -16.99711 -16.75378 -16.64813 -16.44701 -15.84698 -15.15462 -14.94774 -14.86040 -14.70470 -14.46617 -14.28169 -13.81974 -13.69379 -13.63727 -13.42819 -13.28741 -13.07716 -12.93569 -12.90157 -12.78841 -12.57675 -12.47738 -12.31380 -12.17398 -12.11607 -11.66510 -11.64643 -11.40344 -11.35317 -11.16180 -11.13368 -10.71704 -10.56583 -9.93900 -8.19285 -6.31697 -0.97431 1.39649 1.41190 1.54529 1.57375 1.83785 1.91463 2.41429 2.70069 2.93933 3.13412 3.35340 3.51421 3.59840 3.77330 3.90128 3.97218 4.06680 4.09296 4.25505 4.34409 4.44045 4.58046 4.61495 4.64895 4.69861 4.71719 4.79012 4.81704 4.84441 4.88998 4.95518 5.16298 5.16578 5.20610 5.31268 5.34756 5.46385 5.55421 5.76299 5.86758 6.24084 6.30674 6.86839 7.14293 7.37969 8.93423 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.024374 B = 0.002758 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.494712 B =10148.875010 C =10620.657855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.556 4.556 3 H 0.193 0.807 4 C -0.140 4.140 5 C 0.102 3.898 6 N -0.630 5.630 7 C 0.523 3.477 8 O -0.573 6.573 9 C -0.137 4.137 10 C -0.098 4.098 11 C -0.095 4.095 12 C 0.018 3.982 13 C -0.540 4.540 14 H 0.067 0.933 15 C -0.008 4.008 16 N -0.939 5.939 17 Si 0.971 3.029 18 H -0.256 1.256 19 H -0.280 1.280 20 H -0.277 1.277 21 C 0.098 3.902 22 C -0.608 4.608 23 S 2.380 3.620 24 O -0.992 6.992 25 O -0.986 6.986 26 H 0.080 0.920 27 H 0.110 0.890 28 H 0.047 0.953 29 H 0.060 0.940 30 H 0.127 0.873 31 H 0.079 0.921 32 H 0.137 0.863 33 H 0.131 0.869 34 H 0.105 0.895 35 H 0.034 0.966 36 H 0.049 0.951 37 H 0.068 0.932 38 H 0.056 0.944 39 H -0.020 1.020 40 H -0.013 1.013 41 H 0.263 0.737 42 H 0.115 0.885 43 H 0.151 0.849 44 H 0.189 0.811 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.407 28.024 -4.266 34.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.668 4.668 3 H 0.210 0.790 4 C -0.179 4.179 5 C -0.017 4.017 6 N -0.365 5.365 7 C 0.314 3.686 8 O -0.451 6.451 9 C -0.176 4.176 10 C -0.137 4.137 11 C -0.133 4.133 12 C -0.019 4.019 13 C -0.578 4.578 14 H 0.085 0.915 15 C -0.205 4.205 16 N -0.579 5.579 17 Si 0.795 3.205 18 H -0.180 1.180 19 H -0.206 1.206 20 H -0.203 1.203 21 C -0.027 4.027 22 C -0.742 4.742 23 S 2.569 3.431 24 O -0.989 6.989 25 O -0.983 6.983 26 H 0.099 0.901 27 H 0.129 0.871 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.145 0.855 31 H 0.098 0.902 32 H 0.155 0.845 33 H 0.149 0.851 34 H 0.123 0.877 35 H 0.053 0.947 36 H 0.068 0.932 37 H 0.086 0.914 38 H 0.075 0.925 39 H -0.002 1.002 40 H 0.006 0.994 41 H 0.072 0.928 42 H 0.133 0.867 43 H 0.169 0.831 44 H 0.206 0.794 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -19.775 26.681 -4.378 33.498 hybrid contribution 0.841 -0.894 0.238 1.251 sum -18.934 25.786 -4.140 32.258 Atomic orbital electron populations 1.21647 0.88895 1.03275 1.05941 1.29638 1.07520 1.15384 1.14243 0.78961 1.20391 0.98620 1.00568 0.98354 1.20763 0.86314 1.05080 0.89584 1.48221 1.40821 1.22080 1.25341 1.21056 0.80508 0.80215 0.86849 1.90675 1.68917 1.44630 1.40858 1.21837 0.98319 1.00147 0.97340 1.21268 0.97421 0.96296 0.98678 1.21456 0.97006 0.97848 0.96979 1.19060 0.94116 0.93288 0.95430 1.21774 1.21530 1.06022 1.08483 0.91460 1.26125 0.99513 0.95758 0.99150 1.70150 1.41532 1.11374 1.34879 0.85306 0.78045 0.78407 0.78707 1.17968 1.20621 1.20282 1.21572 1.05150 0.92151 0.83864 1.31492 1.17474 1.16636 1.08588 1.08774 0.78827 0.77864 0.77600 1.93498 1.62930 1.87269 1.55155 1.93581 1.84912 1.36407 1.83439 0.90129 0.87147 0.93346 0.92192 0.85491 0.90241 0.84503 0.85094 0.87679 0.94741 0.93208 0.91365 0.92520 1.00164 0.99438 0.92848 0.86656 0.83105 0.79354 0.84669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 8.75 71.98 0.63 -0.56 16 2 C -0.56 -4.34 2.63 30.63 0.08 -4.26 16 3 H 0.19 -0.62 6.91 -2.46 -0.02 -0.64 16 4 C -0.14 -1.63 4.63 28.01 0.13 -1.50 16 5 C 0.10 1.12 5.45 83.18 0.45 1.58 16 6 N -0.63 -9.78 1.88 -830.75 -1.56 -11.34 16 7 C 0.52 14.54 7.14 87.66 0.63 15.17 16 8 O -0.57 -22.09 15.62 -3.04 -0.05 -22.13 16 9 C -0.14 -3.63 4.44 29.85 0.13 -3.50 16 10 C -0.10 -3.81 4.50 30.59 0.14 -3.67 16 11 C -0.10 -4.05 5.15 30.60 0.16 -3.90 16 12 C 0.02 1.03 4.97 29.85 0.15 1.18 16 13 C -0.54 -31.96 9.11 25.60 0.23 -31.72 16 14 H 0.07 3.72 7.74 -2.91 -0.02 3.70 16 15 C -0.01 -0.51 5.46 84.65 0.46 -0.05 16 16 N -0.94 -60.24 13.29 21.45 0.28 -59.95 16 17 Si 0.97 45.52 29.54 68.60 2.03 47.55 16 18 H -0.26 -11.19 7.11 99.48 0.71 -10.49 16 19 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 20 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 21 C 0.10 0.51 4.65 88.33 0.41 0.92 16 22 C -0.61 -4.75 6.78 73.24 0.50 -4.26 16 23 S 2.38 42.20 4.66 -56.49 -0.26 41.93 16 24 O -0.99 -24.29 17.15 -127.32 -2.18 -26.48 16 25 O -0.99 -29.62 15.08 -127.32 -1.92 -31.54 16 26 H 0.08 0.71 7.75 -2.39 -0.02 0.69 16 27 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 28 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.06 1.31 6.31 -2.38 -0.02 1.29 16 30 H 0.13 0.79 7.89 -2.39 -0.02 0.77 16 31 H 0.08 1.33 7.36 -2.39 -0.02 1.31 16 32 H 0.14 0.04 7.80 -2.38 -0.02 0.02 16 33 H 0.13 2.41 7.55 -2.39 -0.02 2.40 16 34 H 0.11 2.44 6.36 -2.39 -0.02 2.43 16 35 H 0.03 1.52 8.10 -2.38 -0.02 1.50 16 36 H 0.05 2.03 8.10 -2.39 -0.02 2.01 16 37 H 0.07 2.61 8.14 -2.38 -0.02 2.59 16 38 H 0.06 2.29 8.14 -2.38 -0.02 2.27 16 39 H -0.02 -1.26 8.14 -2.39 -0.02 -1.28 16 40 H -0.01 -0.79 8.14 -2.38 -0.02 -0.80 16 41 H 0.26 15.73 8.31 -92.71 -0.77 14.95 16 42 H 0.12 0.33 7.11 -2.39 -0.02 0.31 16 43 H 0.15 -0.81 6.71 -2.39 -0.02 -0.82 16 44 H 0.19 -0.13 8.14 -2.39 -0.02 -0.15 16 45 H 0.14 1.37 6.59 -2.39 -0.02 1.35 16 Total: -1.00 -97.72 359.80 1.40 -96.31 By element: Atomic # 1 Polarization: -0.75 SS G_CDS: 0.97 Total: 0.21 kcal Atomic # 6 Polarization: -38.66 SS G_CDS: 4.10 Total: -34.56 kcal Atomic # 7 Polarization: -70.02 SS G_CDS: -1.27 Total: -71.29 kcal Atomic # 8 Polarization: -76.00 SS G_CDS: -4.15 Total: -80.15 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Atomic # 16 Polarization: 42.20 SS G_CDS: -0.26 Total: 41.93 kcal Total: -97.72 1.40 -96.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323359592.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.377 kcal (2) G-P(sol) polarization free energy of solvation -97.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds