Wall clock time and date at job start Tue Mar 31 2020 12:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 114.00067 * 2 1 4 4 H 1.09005 * 109.44373 * 330.03452 * 3 2 1 5 5 C 1.53039 * 109.46341 * 89.99618 * 3 2 1 6 6 C 1.53189 * 109.31492 * 181.38799 * 5 3 2 7 7 N 1.46927 * 108.77638 * 305.36951 * 6 5 3 8 8 S 1.65598 * 120.63034 * 233.58572 * 7 6 5 9 9 O 1.42096 * 104.27710 * 333.92603 * 8 7 6 10 10 O 1.42098 * 104.27913 * 206.06683 * 8 7 6 11 11 C 1.81402 * 104.44954 * 89.99341 * 8 7 6 12 12 C 1.53002 * 109.46820 * 183.71997 * 11 8 7 13 13 C 1.50704 * 115.55288 * 294.80948 * 12 11 8 14 14 H 1.08003 * 119.99389 * 94.91053 * 13 12 11 15 15 C 1.37874 * 119.99930 * 275.18947 * 13 12 11 16 16 N 1.31512 * 120.00443 * 5.93312 * 15 13 12 17 17 Si 1.86806 * 119.99795 * 185.93644 * 15 13 12 18 18 H 1.48501 * 109.47115 * 59.99666 * 17 15 13 19 19 H 1.48497 * 109.47283 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.46902 * 300.00253 * 17 15 13 21 21 C 1.52999 * 117.49876 * 80.48840 * 12 11 8 22 22 C 1.52998 * 117.49633 * 149.14435 * 12 11 8 23 23 C 1.46926 * 118.73978 * 53.85521 * 7 6 5 24 24 H 1.09004 * 109.58610 * 186.35739 * 23 7 6 25 25 C 1.53001 * 109.58692 * 65.93240 * 23 7 6 26 26 C 1.53039 * 109.46234 * 210.06913 * 3 2 1 27 27 H 1.09001 * 109.47205 * 60.00410 * 1 2 3 28 28 H 1.08998 * 109.46792 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47230 * 300.00020 * 1 2 3 30 30 H 1.09003 * 109.49736 * 61.43764 * 5 3 2 31 31 H 1.09001 * 109.49869 * 301.33911 * 5 3 2 32 32 H 1.08997 * 109.59022 * 185.57633 * 6 5 3 33 33 H 1.09011 * 109.70073 * 65.21882 * 6 5 3 34 34 H 1.09005 * 109.46819 * 63.72283 * 11 8 7 35 35 H 1.08996 * 109.47454 * 303.72168 * 11 8 7 36 36 H 0.97002 * 120.00260 * 185.07537 * 16 15 13 37 37 H 1.08998 * 117.49482 * 214.99954 * 21 12 11 38 38 H 1.09002 * 117.49837 * 0.02562 * 21 12 11 39 39 H 1.09004 * 117.50105 * 359.97438 * 22 12 11 40 40 H 1.09000 * 117.50372 * 144.97121 * 22 12 11 41 41 H 1.08998 * 109.46850 * 59.99588 * 25 23 7 42 42 H 1.08996 * 109.47433 * 180.02562 * 25 23 7 43 43 H 1.09000 * 109.46953 * 299.99886 * 25 23 7 44 44 H 1.09004 * 109.49696 * 298.56613 * 26 3 2 45 45 H 1.09002 * 109.49703 * 58.62288 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3443 1.9992 -0.5134 5 6 2.2176 1.7714 1.4429 6 6 2.8085 3.1847 1.4391 7 7 4.0307 3.1840 0.6236 8 16 5.4582 3.7513 1.2425 9 8 5.0622 4.6780 2.2442 10 8 6.1912 4.1748 0.1012 11 6 6.2360 2.2951 1.9942 12 6 7.5343 2.7117 2.6884 13 6 8.6220 3.2238 1.7796 14 1 8.7305 4.2852 1.6122 15 6 9.4748 2.3369 1.1575 16 7 9.2685 1.0423 1.2628 17 14 10.9235 2.9741 0.1651 18 1 11.8147 3.7711 1.0460 19 1 11.6809 1.8274 -0.3974 20 1 10.4268 3.8307 -0.9417 21 6 7.4217 3.3397 4.0791 22 6 7.9619 1.9160 3.9232 23 6 3.9610 2.6761 -0.7533 24 1 4.9634 2.6383 -1.1799 25 6 3.0763 3.5974 -1.5956 26 6 3.3584 1.2634 -0.7230 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 2.9029 1.0919 1.9497 31 1 1.2602 1.7788 1.9640 32 1 3.0501 3.4826 2.4594 33 1 2.0870 3.8835 1.0155 34 1 6.4576 1.5610 1.2196 35 1 5.5570 1.8575 2.7260 36 1 9.9085 0.4171 0.8879 37 1 8.1344 4.1232 4.3366 38 1 6.4228 3.4556 4.4996 39 1 7.3181 1.0959 4.2413 40 1 9.0298 1.7624 4.0781 41 1 3.4992 4.6020 -1.6009 42 1 3.0256 3.2187 -2.6164 43 1 2.0736 3.6275 -1.1694 44 1 4.0330 0.5886 -0.1959 45 1 3.2131 0.9086 -1.7433 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364852852.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:34 Heat of formation + Delta-G solvation = -119.035320 kcal Electronic energy + Delta-G solvation = -26731.797969 eV Core-core repulsion = 23069.327346 eV Total energy + Delta-G solvation = -3662.470622 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.45054 -38.58564 -38.05010 -37.91410 -36.78865 -34.09172 -33.16313 -32.42404 -29.89341 -28.70099 -27.49138 -27.15997 -24.59531 -23.61383 -23.01309 -21.68304 -20.83804 -19.45225 -18.79200 -18.35624 -17.47997 -17.12357 -16.85496 -16.60501 -16.06238 -15.98364 -15.73242 -15.57042 -15.05840 -14.94040 -14.58972 -14.26724 -14.05270 -13.76933 -13.67292 -13.51052 -13.17272 -12.99777 -12.98030 -12.91706 -12.84413 -12.56156 -12.44729 -12.41875 -12.25139 -12.21252 -12.06479 -11.93135 -11.78298 -11.53686 -11.18648 -10.87287 -10.56138 -10.42032 -10.19268 -9.76748 -8.20333 -6.35369 -0.55040 1.38395 1.41368 1.48053 1.88747 2.39695 2.80825 2.99506 3.07838 3.30906 3.38233 3.56457 3.82726 3.93400 4.04243 4.11259 4.22985 4.25180 4.28477 4.43120 4.46679 4.50143 4.56356 4.57921 4.61513 4.67307 4.76445 4.80688 4.83062 4.93435 4.94994 4.97561 5.01756 5.10373 5.19031 5.21499 5.33298 5.42332 5.44926 5.56935 5.70108 5.74301 6.20821 6.35178 6.71207 7.37543 8.87267 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016934 B = 0.004621 C = 0.004498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.047700 B = 6057.233474 C = 6223.354410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.408 6.408 3 C 0.094 3.906 4 H 0.085 0.915 5 C -0.154 4.154 6 C 0.117 3.883 7 N -0.999 5.999 8 S 2.620 3.380 9 O -0.989 6.989 10 O -0.988 6.988 11 C -0.552 4.552 12 C 0.009 3.991 13 C -0.532 4.532 14 H 0.048 0.952 15 C 0.042 3.958 16 N -0.893 5.893 17 Si 0.934 3.066 18 H -0.267 1.267 19 H -0.274 1.274 20 H -0.276 1.276 21 C -0.196 4.196 22 C -0.137 4.137 23 C 0.143 3.857 24 H 0.083 0.917 25 C -0.157 4.157 26 C -0.124 4.124 27 H 0.052 0.948 28 H 0.091 0.909 29 H 0.051 0.949 30 H 0.064 0.936 31 H 0.098 0.902 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.117 0.883 35 H 0.126 0.874 36 H 0.265 0.735 37 H 0.083 0.917 38 H 0.098 0.902 39 H 0.085 0.915 40 H 0.067 0.933 41 H 0.048 0.952 42 H 0.087 0.913 43 H 0.079 0.921 44 H 0.060 0.940 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.280 -1.675 -2.672 19.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.328 6.328 3 C 0.037 3.963 4 H 0.103 0.897 5 C -0.193 4.193 6 C -0.008 4.008 7 N -0.838 5.838 8 S 2.719 3.281 9 O -0.980 6.980 10 O -0.978 6.978 11 C -0.684 4.684 12 C 0.007 3.993 13 C -0.569 4.569 14 H 0.066 0.934 15 C -0.160 4.160 16 N -0.529 5.529 17 Si 0.759 3.241 18 H -0.192 1.192 19 H -0.198 1.198 20 H -0.202 1.202 21 C -0.233 4.233 22 C -0.176 4.176 23 C 0.037 3.963 24 H 0.101 0.899 25 C -0.216 4.216 26 C -0.163 4.163 27 H 0.071 0.929 28 H 0.110 0.890 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.117 0.883 32 H 0.108 0.892 33 H 0.110 0.890 34 H 0.135 0.865 35 H 0.144 0.856 36 H 0.074 0.926 37 H 0.102 0.898 38 H 0.117 0.883 39 H 0.104 0.896 40 H 0.086 0.914 41 H 0.067 0.933 42 H 0.106 0.894 43 H 0.098 0.902 44 H 0.079 0.921 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -18.850 -1.103 -2.852 19.097 hybrid contribution 1.149 -0.379 -0.244 1.234 sum -17.701 -1.482 -3.096 18.031 Atomic orbital electron populations 1.22969 0.79725 1.03577 1.00946 1.87910 1.21286 1.28384 1.95175 1.22086 0.94424 0.84601 0.95201 0.89712 1.22439 1.02647 0.96174 0.98046 1.21569 0.85998 0.97575 0.95647 1.57936 1.23705 1.80612 1.21507 1.04517 0.72850 0.76950 0.73802 1.93446 1.81869 1.60491 1.62152 1.93474 1.72646 1.80961 1.50697 1.29939 1.07593 1.18921 1.11939 1.18441 0.92025 1.01878 0.86996 1.20679 1.15726 0.92642 1.27828 0.93380 1.25507 0.99628 0.95025 0.95876 1.70054 1.35702 1.01551 1.45591 0.85986 0.80079 0.78485 0.79591 1.19236 1.19838 1.20163 1.23250 1.01901 0.96709 1.01472 1.22483 0.99533 0.92814 1.02816 1.21158 1.01000 0.93433 0.80678 0.89897 1.22144 1.00135 0.98978 1.00354 1.22046 0.96325 0.95621 1.02349 0.92927 0.89008 0.93039 0.91742 0.88345 0.89176 0.88986 0.86479 0.85591 0.92581 0.89805 0.88333 0.89616 0.91450 0.93286 0.89412 0.90249 0.92091 0.88783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 10.82 113.37 1.23 1.54 16 2 O -0.41 -8.51 10.35 -148.98 -1.54 -10.05 16 3 C 0.09 1.83 2.36 30.62 0.07 1.90 16 4 H 0.09 1.28 6.13 -2.38 -0.01 1.27 16 5 C -0.15 -2.99 5.69 30.67 0.17 -2.82 16 6 C 0.12 2.66 5.89 86.36 0.51 3.17 16 7 N -1.00 -29.88 2.92 -490.01 -1.43 -31.31 16 8 S 2.62 107.26 5.18 -56.49 -0.29 106.97 16 9 O -0.99 -42.67 16.72 -127.65 -2.13 -44.81 16 10 O -0.99 -48.29 16.25 -127.65 -2.07 -50.36 16 11 C -0.55 -23.49 6.03 71.98 0.43 -23.05 16 12 C 0.01 0.43 1.33 -52.93 -0.07 0.36 16 13 C -0.53 -29.90 8.07 25.60 0.21 -29.69 16 14 H 0.05 2.80 7.82 -2.91 -0.02 2.78 16 15 C 0.04 2.35 5.39 84.65 0.46 2.81 16 16 N -0.89 -49.97 12.92 21.45 0.28 -49.69 16 17 Si 0.93 44.43 29.55 68.60 2.03 46.45 16 18 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 19 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 20 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 21 C -0.20 -8.55 9.96 30.62 0.30 -8.24 16 22 C -0.14 -6.27 9.44 30.62 0.29 -5.99 16 23 C 0.14 3.84 3.11 45.12 0.14 3.98 16 24 H 0.08 2.63 7.09 -2.38 -0.02 2.62 16 25 C -0.16 -3.30 9.03 71.98 0.65 -2.65 16 26 C -0.12 -2.87 5.23 30.82 0.16 -2.71 16 27 H 0.05 0.56 8.08 -2.39 -0.02 0.54 16 28 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.05 0.56 7.85 -2.38 -0.02 0.54 16 30 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.10 1.42 7.85 -2.39 -0.02 1.41 16 32 H 0.09 2.13 7.10 -2.39 -0.02 2.11 16 33 H 0.09 1.68 7.49 -2.38 -0.02 1.66 16 34 H 0.12 5.33 8.14 -2.39 -0.02 5.31 16 35 H 0.13 4.45 8.09 -2.39 -0.02 4.43 16 36 H 0.27 14.12 8.32 -92.71 -0.77 13.35 16 37 H 0.08 3.65 8.14 -2.39 -0.02 3.63 16 38 H 0.10 3.78 8.14 -2.39 -0.02 3.76 16 39 H 0.09 3.51 8.14 -2.38 -0.02 3.49 16 40 H 0.07 3.29 8.14 -2.39 -0.02 3.27 16 41 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.08 1.29 5.71 -2.39 -0.01 1.28 16 44 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 45 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -70.53 368.67 0.34 -70.19 By element: Atomic # 1 Polarization: 23.05 SS G_CDS: 0.96 Total: 24.01 kcal Atomic # 6 Polarization: -65.94 SS G_CDS: 4.55 Total: -61.39 kcal Atomic # 7 Polarization: -79.84 SS G_CDS: -1.16 Total: -81.00 kcal Atomic # 8 Polarization: -99.48 SS G_CDS: -5.75 Total: -105.23 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.45 kcal Atomic # 16 Polarization: 107.26 SS G_CDS: -0.29 Total: 106.97 kcal Total: -70.53 0.34 -70.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364852852.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.848 kcal (2) G-P(sol) polarization free energy of solvation -70.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds