Wall clock time and date at job start Tue Mar 31 2020 12:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42896 * 114.00491 * 2 1 4 4 H 1.09003 * 109.46116 * 29.97348 * 3 2 1 5 5 C 1.53039 * 109.46159 * 270.00420 * 3 2 1 6 6 C 1.53195 * 109.31406 * 178.62409 * 5 3 2 7 7 N 1.46927 * 108.77346 * 54.63563 * 6 5 3 8 8 S 1.65601 * 120.63418 * 126.37093 * 7 6 5 9 9 O 1.42102 * 104.27147 * 333.92488 * 8 7 6 10 10 O 1.42094 * 104.27613 * 206.06991 * 8 7 6 11 11 C 1.81397 * 104.45037 * 89.99640 * 8 7 6 12 12 C 1.53004 * 109.46886 * 186.08824 * 11 8 7 13 13 C 1.50692 * 115.55050 * 294.74179 * 12 11 8 14 14 H 1.08001 * 120.00091 * 99.44030 * 13 12 11 15 15 C 1.37879 * 120.00265 * 279.45074 * 13 12 11 16 16 N 1.31517 * 119.99856 * 5.45922 * 15 13 12 17 17 Si 1.86803 * 120.00014 * 185.46743 * 15 13 12 18 18 H 1.48503 * 109.46743 * 269.99005 * 17 15 13 19 19 H 1.48500 * 109.47408 * 29.99367 * 17 15 13 20 20 H 1.48497 * 109.46968 * 149.99601 * 17 15 13 21 21 C 1.53001 * 117.52066 * 80.44726 * 12 11 8 22 22 C 1.52997 * 60.00119 * 107.47624 * 21 12 11 23 23 C 1.46928 * 118.73625 * 306.64131 * 7 6 5 24 24 H 1.09005 * 109.58492 * 173.14365 * 23 7 6 25 25 C 1.52998 * 109.58764 * 293.57206 * 23 7 6 26 26 C 1.52762 * 109.00760 * 53.31182 * 23 7 6 27 27 H 1.08993 * 109.47672 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46965 * 300.00109 * 1 2 3 29 29 H 1.09000 * 109.47043 * 59.99423 * 1 2 3 30 30 H 1.08998 * 109.50221 * 58.67524 * 5 3 2 31 31 H 1.09004 * 109.52322 * 298.59297 * 5 3 2 32 32 H 1.08997 * 109.58603 * 294.85038 * 6 5 3 33 33 H 1.09000 * 109.58532 * 174.42106 * 6 5 3 34 34 H 1.08991 * 109.46995 * 66.08848 * 11 8 7 35 35 H 1.09005 * 109.47070 * 306.08649 * 11 8 7 36 36 H 0.97000 * 119.99617 * 174.99841 * 16 15 13 37 37 H 1.08997 * 117.49652 * 214.97186 * 21 12 11 38 38 H 1.09002 * 117.49540 * 359.97438 * 21 12 11 39 39 H 1.09001 * 117.50233 * 252.50934 * 22 21 12 40 40 H 1.09002 * 117.49872 * 107.48750 * 22 21 12 41 41 H 1.08989 * 109.47473 * 59.99970 * 25 23 7 42 42 H 1.09002 * 109.46996 * 180.02562 * 25 23 7 43 43 H 1.09002 * 109.46930 * 299.99414 * 25 23 7 44 44 H 1.09004 * 109.56004 * 185.55004 * 26 23 7 45 45 H 1.09002 * 109.38587 * 65.51466 * 26 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3447 1.9993 0.5135 5 6 2.2176 1.7712 -1.4429 6 6 2.8090 3.1844 -1.4391 7 7 4.0313 3.1833 -0.6239 8 16 5.4592 3.7492 -1.2431 9 8 5.3300 3.5648 -2.6462 10 8 6.4588 3.0622 -0.5029 11 6 5.4629 5.5157 -0.8309 12 6 6.6706 6.1895 -1.4855 13 6 8.0178 5.7405 -0.9813 14 1 8.5896 5.0152 -1.5410 15 6 8.5205 6.2556 0.1948 16 7 7.7810 7.0557 0.9314 17 14 10.2520 5.8171 0.7417 18 1 10.2102 4.5954 1.5850 19 1 11.0995 5.5662 -0.4516 20 1 10.8226 6.9411 1.5267 21 6 6.5576 6.5592 -2.9658 22 6 6.5236 7.6552 -1.8989 23 6 3.9641 2.6651 0.7493 24 1 4.9676 2.6203 1.1725 25 6 3.0853 3.5829 1.6015 26 6 3.3585 1.2628 0.7228 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.2603 1.7789 -1.9639 31 1 2.9024 1.0916 -1.9503 32 1 2.0869 3.8815 -1.0141 33 1 3.0506 3.4822 -2.4595 34 1 5.5216 5.6362 0.2508 35 1 4.5461 5.9765 -1.1986 36 1 8.1061 7.3599 1.7932 37 1 7.4578 6.4775 -3.5750 38 1 5.6229 6.3219 -3.4739 39 1 5.5664 8.1393 -1.7050 40 1 7.4014 8.2948 -1.8062 41 1 2.0815 3.6200 1.1788 42 1 3.0371 3.1970 2.6198 43 1 3.5120 4.5859 1.6134 44 1 3.2132 0.9087 1.7434 45 1 4.0327 0.5875 0.1959 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364852855.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:39 Heat of formation + Delta-G solvation = -97.528664 kcal Electronic energy + Delta-G solvation = -26613.426412 eV Core-core repulsion = 22951.888389 eV Total energy + Delta-G solvation = -3661.538024 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.52328 -37.03878 -36.75637 -36.32220 -35.05646 -32.16774 -32.05938 -31.45809 -28.14138 -27.77212 -26.45906 -25.46464 -23.62515 -22.64257 -21.23123 -20.14110 -19.35632 -18.13546 -17.43780 -16.61543 -16.42247 -15.72325 -15.27049 -15.12279 -15.03076 -14.71030 -14.36171 -14.06163 -13.83707 -13.61046 -13.33309 -13.21507 -12.98493 -12.48258 -12.12695 -11.92790 -11.83631 -11.76077 -11.52547 -11.34298 -11.25821 -11.09930 -11.03245 -11.01925 -10.93277 -10.68576 -10.57706 -10.47180 -10.27546 -10.11438 -9.69134 -9.62388 -8.98705 -8.84319 -8.59058 -8.07565 -6.14500 -4.25325 1.04104 3.28578 3.31166 3.36742 3.41565 3.60693 4.37373 4.55296 4.66241 4.67995 4.90070 4.93209 5.07538 5.12097 5.13417 5.15733 5.19795 5.21751 5.23300 5.37838 5.44377 5.47095 5.61488 5.65177 5.68828 5.80928 5.88394 5.90892 6.01340 6.05423 6.12498 6.24241 6.34109 6.35241 6.44113 6.61792 6.70248 6.88236 6.98027 7.07679 7.24183 7.36583 7.79902 8.19741 8.80156 9.46293 10.93268 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021119 B = 0.004338 C = 0.004021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.476768 B = 6453.385416 C = 6961.748311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.386 6.386 3 C 0.090 3.910 4 H 0.064 0.936 5 C -0.152 4.152 6 C 0.121 3.879 7 N -1.007 6.007 8 S 2.605 3.395 9 O -0.971 6.971 10 O -0.947 6.947 11 C -0.552 4.552 12 C 0.045 3.955 13 C -0.515 4.515 14 H 0.068 0.932 15 C 0.082 3.918 16 N -0.876 5.876 17 Si 0.891 3.109 18 H -0.274 1.274 19 H -0.270 1.270 20 H -0.285 1.285 21 C -0.208 4.208 22 C -0.145 4.145 23 C 0.147 3.853 24 H 0.111 0.889 25 C -0.168 4.168 26 C -0.121 4.121 27 H 0.082 0.918 28 H 0.039 0.961 29 H 0.040 0.960 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.064 0.936 33 H 0.096 0.904 34 H 0.135 0.865 35 H 0.096 0.904 36 H 0.263 0.737 37 H 0.086 0.914 38 H 0.075 0.925 39 H 0.066 0.934 40 H 0.085 0.915 41 H 0.058 0.942 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.079 0.921 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.427 -7.261 0.668 17.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.305 6.305 3 C 0.033 3.967 4 H 0.082 0.918 5 C -0.191 4.191 6 C -0.005 4.005 7 N -0.842 5.842 8 S 2.704 3.296 9 O -0.962 6.962 10 O -0.937 6.937 11 C -0.685 4.685 12 C 0.042 3.958 13 C -0.552 4.552 14 H 0.086 0.914 15 C -0.123 4.123 16 N -0.511 5.511 17 Si 0.718 3.282 18 H -0.199 1.199 19 H -0.194 1.194 20 H -0.211 1.211 21 C -0.245 4.245 22 C -0.184 4.184 23 C 0.041 3.959 24 H 0.129 0.871 25 C -0.227 4.227 26 C -0.160 4.160 27 H 0.101 0.899 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.089 0.911 31 H 0.096 0.904 32 H 0.082 0.918 33 H 0.115 0.885 34 H 0.153 0.847 35 H 0.115 0.885 36 H 0.073 0.927 37 H 0.104 0.896 38 H 0.093 0.907 39 H 0.084 0.916 40 H 0.104 0.896 41 H 0.077 0.923 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.097 0.903 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -14.655 -7.825 0.353 16.617 hybrid contribution 0.177 0.686 0.735 1.021 sum -14.477 -7.139 1.088 16.178 Atomic orbital electron populations 1.22754 0.81524 1.02461 0.99800 1.87924 1.19267 1.28257 1.95066 1.22154 0.94939 0.84112 0.95500 0.91756 1.22354 1.01631 0.97692 0.97407 1.21300 0.86683 0.96341 0.96194 1.58274 1.26129 1.78001 1.21846 1.05277 0.72043 0.78296 0.73996 1.93477 1.85342 1.86307 1.31054 1.93521 1.55818 1.71536 1.72828 1.30010 1.05183 1.21264 1.12036 1.18282 0.91754 0.95325 0.90419 1.20531 1.00459 1.25825 1.08420 0.91417 1.24945 0.97711 0.93457 0.96138 1.69971 1.37373 1.32556 1.11209 0.86581 0.84315 0.78202 0.79112 1.19949 1.19439 1.21083 1.23159 1.01260 1.06976 0.93093 1.22577 1.00422 0.92729 1.02655 1.20854 1.01483 0.92011 0.81597 0.87101 1.22258 1.00197 1.00650 0.99606 1.21852 0.95560 0.97373 1.01219 0.89898 0.94205 0.94170 0.91052 0.90419 0.91785 0.88530 0.84701 0.88533 0.92747 0.89552 0.90685 0.91553 0.89643 0.92345 0.91480 0.91531 0.90262 0.90450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.82 101.05 1.09 1.35 16 2 O -0.39 -4.54 10.35 -35.23 -0.36 -4.90 16 3 C 0.09 1.02 2.37 -26.69 -0.06 0.96 16 4 H 0.06 0.63 6.14 -51.93 -0.32 0.31 16 5 C -0.15 -1.77 5.69 -26.61 -0.15 -1.92 16 6 C 0.12 1.53 6.02 -3.71 -0.02 1.51 16 7 N -1.01 -15.56 2.93 -106.70 -0.31 -15.87 16 8 S 2.60 53.06 5.19 -107.50 -0.56 52.50 16 9 O -0.97 -21.26 16.59 -57.54 -0.95 -22.22 16 10 O -0.95 -22.54 16.24 -57.54 -0.93 -23.48 16 11 C -0.55 -11.54 6.03 37.16 0.22 -11.32 16 12 C 0.04 1.08 1.26 -155.66 -0.20 0.88 16 13 C -0.52 -14.07 8.17 -34.44 -0.28 -14.35 16 14 H 0.07 1.90 7.82 -52.49 -0.41 1.48 16 15 C 0.08 2.24 5.42 -17.82 -0.10 2.14 16 16 N -0.88 -23.87 13.10 55.43 0.73 -23.14 16 17 Si 0.89 21.36 29.54 -169.99 -5.02 16.33 16 18 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 20 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 21 C -0.21 -4.54 9.96 -26.73 -0.27 -4.81 16 22 C -0.14 -3.27 9.67 -26.73 -0.26 -3.53 16 23 C 0.15 2.03 3.19 -67.82 -0.22 1.82 16 24 H 0.11 1.72 6.85 -51.93 -0.36 1.36 16 25 C -0.17 -1.90 9.02 37.16 0.34 -1.57 16 26 C -0.12 -1.51 5.17 -26.84 -0.14 -1.65 16 27 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.04 0.28 8.09 -51.93 -0.42 -0.14 16 29 H 0.04 0.29 7.85 -51.93 -0.41 -0.12 16 30 H 0.07 0.68 7.85 -51.93 -0.41 0.28 16 31 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.06 0.65 7.52 -51.93 -0.39 0.26 16 33 H 0.10 1.28 6.86 -51.93 -0.36 0.92 16 34 H 0.13 2.95 8.14 -51.93 -0.42 2.52 16 35 H 0.10 1.70 8.09 -51.92 -0.42 1.28 16 36 H 0.26 6.83 8.32 -40.82 -0.34 6.49 16 37 H 0.09 1.87 8.14 -51.93 -0.42 1.45 16 38 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 39 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 40 H 0.09 2.03 8.14 -51.93 -0.42 1.61 16 41 H 0.06 0.57 5.74 -51.93 -0.30 0.27 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 368.73 15.07 5.56 5.56 Total: -1.00 -32.23 368.73 -9.47 -41.70 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -7.57 Total: 4.01 kcal Atomic # 6 Polarization: -30.45 SS G_CDS: -0.04 Total: -30.49 kcal Atomic # 7 Polarization: -39.42 SS G_CDS: 0.41 Total: -39.01 kcal Atomic # 8 Polarization: -48.34 SS G_CDS: -2.25 Total: -50.60 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: 53.06 SS G_CDS: -0.56 Total: 52.50 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.23 -9.47 -41.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364852855.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.825 kcal (2) G-P(sol) polarization free energy of solvation -32.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds