Wall clock time and date at job start Tue Mar 31 2020 12:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42896 * 114.00491 * 2 1 4 4 H 1.09003 * 109.46116 * 29.97348 * 3 2 1 5 5 C 1.53039 * 109.46159 * 270.00420 * 3 2 1 6 6 C 1.53195 * 109.31406 * 178.62409 * 5 3 2 7 7 N 1.46927 * 108.77346 * 54.63563 * 6 5 3 8 8 S 1.65601 * 120.63418 * 126.37093 * 7 6 5 9 9 O 1.42102 * 104.27147 * 333.92488 * 8 7 6 10 10 O 1.42094 * 104.27613 * 206.06991 * 8 7 6 11 11 C 1.81397 * 104.45037 * 89.99640 * 8 7 6 12 12 C 1.53004 * 109.46886 * 186.08824 * 11 8 7 13 13 C 1.50692 * 115.55050 * 294.74179 * 12 11 8 14 14 H 1.08001 * 120.00091 * 99.44030 * 13 12 11 15 15 C 1.37879 * 120.00265 * 279.45074 * 13 12 11 16 16 N 1.31517 * 119.99856 * 5.45922 * 15 13 12 17 17 Si 1.86803 * 120.00014 * 185.46743 * 15 13 12 18 18 H 1.48503 * 109.46743 * 269.99005 * 17 15 13 19 19 H 1.48500 * 109.47408 * 29.99367 * 17 15 13 20 20 H 1.48497 * 109.46968 * 149.99601 * 17 15 13 21 21 C 1.53001 * 117.52066 * 80.44726 * 12 11 8 22 22 C 1.52997 * 60.00119 * 107.47624 * 21 12 11 23 23 C 1.46928 * 118.73625 * 306.64131 * 7 6 5 24 24 H 1.09005 * 109.58492 * 173.14365 * 23 7 6 25 25 C 1.52998 * 109.58764 * 293.57206 * 23 7 6 26 26 C 1.52762 * 109.00760 * 53.31182 * 23 7 6 27 27 H 1.08993 * 109.47672 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46965 * 300.00109 * 1 2 3 29 29 H 1.09000 * 109.47043 * 59.99423 * 1 2 3 30 30 H 1.08998 * 109.50221 * 58.67524 * 5 3 2 31 31 H 1.09004 * 109.52322 * 298.59297 * 5 3 2 32 32 H 1.08997 * 109.58603 * 294.85038 * 6 5 3 33 33 H 1.09000 * 109.58532 * 174.42106 * 6 5 3 34 34 H 1.08991 * 109.46995 * 66.08848 * 11 8 7 35 35 H 1.09005 * 109.47070 * 306.08649 * 11 8 7 36 36 H 0.97000 * 119.99617 * 174.99841 * 16 15 13 37 37 H 1.08997 * 117.49652 * 214.97186 * 21 12 11 38 38 H 1.09002 * 117.49540 * 359.97438 * 21 12 11 39 39 H 1.09001 * 117.50233 * 252.50934 * 22 21 12 40 40 H 1.09002 * 117.49872 * 107.48750 * 22 21 12 41 41 H 1.08989 * 109.47473 * 59.99970 * 25 23 7 42 42 H 1.09002 * 109.46996 * 180.02562 * 25 23 7 43 43 H 1.09002 * 109.46930 * 299.99414 * 25 23 7 44 44 H 1.09004 * 109.56004 * 185.55004 * 26 23 7 45 45 H 1.09002 * 109.38587 * 65.51466 * 26 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3447 1.9993 0.5135 5 6 2.2176 1.7712 -1.4429 6 6 2.8090 3.1844 -1.4391 7 7 4.0313 3.1833 -0.6239 8 16 5.4592 3.7492 -1.2431 9 8 5.3300 3.5648 -2.6462 10 8 6.4588 3.0622 -0.5029 11 6 5.4629 5.5157 -0.8309 12 6 6.6706 6.1895 -1.4855 13 6 8.0178 5.7405 -0.9813 14 1 8.5896 5.0152 -1.5410 15 6 8.5205 6.2556 0.1948 16 7 7.7810 7.0557 0.9314 17 14 10.2520 5.8171 0.7417 18 1 10.2102 4.5954 1.5850 19 1 11.0995 5.5662 -0.4516 20 1 10.8226 6.9411 1.5267 21 6 6.5576 6.5592 -2.9658 22 6 6.5236 7.6552 -1.8989 23 6 3.9641 2.6651 0.7493 24 1 4.9676 2.6203 1.1725 25 6 3.0853 3.5829 1.6015 26 6 3.3585 1.2628 0.7228 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.2603 1.7789 -1.9639 31 1 2.9024 1.0916 -1.9503 32 1 2.0869 3.8815 -1.0141 33 1 3.0506 3.4822 -2.4595 34 1 5.5216 5.6362 0.2508 35 1 4.5461 5.9765 -1.1986 36 1 8.1061 7.3599 1.7932 37 1 7.4578 6.4775 -3.5750 38 1 5.6229 6.3219 -3.4739 39 1 5.5664 8.1393 -1.7050 40 1 7.4014 8.2948 -1.8062 41 1 2.0815 3.6200 1.1788 42 1 3.0371 3.1970 2.6198 43 1 3.5120 4.5859 1.6134 44 1 3.2132 0.9087 1.7434 45 1 4.0327 0.5875 0.1959 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364852855.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:38 Heat of formation + Delta-G solvation = -119.205451 kcal Electronic energy + Delta-G solvation = -26614.366388 eV Core-core repulsion = 22951.888389 eV Total energy + Delta-G solvation = -3662.478000 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.47513 -38.57566 -38.04276 -37.92214 -36.76817 -34.10296 -33.17955 -32.47268 -29.82711 -28.67408 -27.50719 -27.15555 -24.62041 -23.61800 -23.00198 -21.59360 -20.94293 -19.41302 -18.79814 -18.35020 -17.49786 -17.08178 -16.81139 -16.62337 -16.05169 -16.00017 -15.80561 -15.52693 -15.06059 -14.91906 -14.61985 -14.27061 -14.03589 -13.74608 -13.68791 -13.47431 -13.13751 -12.99830 -12.98955 -12.90229 -12.86808 -12.54585 -12.44932 -12.41911 -12.22403 -12.17012 -12.05722 -11.91591 -11.76106 -11.54195 -11.18151 -10.89669 -10.56869 -10.43259 -10.17149 -9.75673 -8.20150 -6.34881 -0.53992 1.37278 1.40409 1.48108 1.90958 2.39051 2.81000 3.02594 3.06988 3.32507 3.40602 3.58361 3.83003 3.94241 4.05420 4.10077 4.22965 4.28427 4.29174 4.44754 4.49513 4.51067 4.57405 4.59894 4.61699 4.67328 4.75866 4.81127 4.84982 4.92765 4.96342 4.99361 5.01060 5.10061 5.19558 5.21761 5.34383 5.43783 5.47703 5.57432 5.71247 5.76475 6.21969 6.33738 6.70676 7.37603 8.86925 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021119 B = 0.004338 C = 0.004021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.476768 B = 6453.385416 C = 6961.748311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.409 6.409 3 C 0.094 3.906 4 H 0.090 0.910 5 C -0.150 4.150 6 C 0.112 3.888 7 N -1.000 6.000 8 S 2.616 3.384 9 O -0.992 6.992 10 O -0.993 6.993 11 C -0.546 4.546 12 C 0.011 3.989 13 C -0.535 4.535 14 H 0.045 0.955 15 C 0.045 3.955 16 N -0.891 5.891 17 Si 0.933 3.067 18 H -0.277 1.277 19 H -0.270 1.270 20 H -0.271 1.271 21 C -0.196 4.196 22 C -0.140 4.140 23 C 0.140 3.860 24 H 0.084 0.916 25 C -0.163 4.163 26 C -0.120 4.120 27 H 0.092 0.908 28 H 0.054 0.946 29 H 0.051 0.949 30 H 0.099 0.901 31 H 0.051 0.949 32 H 0.101 0.899 33 H 0.090 0.910 34 H 0.123 0.877 35 H 0.132 0.868 36 H 0.266 0.734 37 H 0.080 0.920 38 H 0.100 0.900 39 H 0.090 0.910 40 H 0.066 0.934 41 H 0.082 0.918 42 H 0.085 0.915 43 H 0.055 0.945 44 H 0.096 0.904 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.246 -6.990 1.093 19.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.329 6.329 3 C 0.037 3.963 4 H 0.108 0.892 5 C -0.190 4.190 6 C -0.013 4.013 7 N -0.838 5.838 8 S 2.716 3.284 9 O -0.982 6.982 10 O -0.983 6.983 11 C -0.679 4.679 12 C 0.008 3.992 13 C -0.573 4.573 14 H 0.064 0.936 15 C -0.158 4.158 16 N -0.527 5.527 17 Si 0.758 3.242 18 H -0.203 1.203 19 H -0.195 1.195 20 H -0.196 1.196 21 C -0.234 4.234 22 C -0.179 4.179 23 C 0.035 3.965 24 H 0.102 0.898 25 C -0.222 4.222 26 C -0.160 4.160 27 H 0.111 0.889 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.117 0.883 31 H 0.070 0.930 32 H 0.119 0.881 33 H 0.108 0.892 34 H 0.141 0.859 35 H 0.150 0.850 36 H 0.075 0.925 37 H 0.099 0.901 38 H 0.118 0.882 39 H 0.108 0.892 40 H 0.085 0.915 41 H 0.100 0.900 42 H 0.104 0.896 43 H 0.074 0.926 44 H 0.115 0.885 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -17.468 -7.546 0.766 19.044 hybrid contribution 0.990 0.531 0.578 1.263 sum -16.478 -7.015 1.344 17.960 Atomic orbital electron populations 1.22978 0.79612 1.03633 1.01015 1.87898 1.21410 1.28408 1.95174 1.22106 0.94453 0.84721 0.95034 0.89203 1.22359 1.02227 0.96348 0.98024 1.21643 0.85916 0.97969 0.95753 1.57886 1.25600 1.77444 1.22905 1.04589 0.72574 0.78016 0.73267 1.93437 1.85995 1.86500 1.32295 1.93458 1.58695 1.72531 1.73618 1.29875 1.05369 1.21686 1.10987 1.18414 0.91684 0.96769 0.92284 1.20699 1.02234 1.25629 1.08699 0.93627 1.25482 1.00338 0.93686 0.96313 1.70005 1.38259 1.32989 1.11408 0.85939 0.81361 0.78189 0.78734 1.20281 1.19501 1.19620 1.23209 1.02243 1.05747 0.92165 1.22542 1.00772 0.91948 1.02644 1.21008 1.01056 0.93627 0.80852 0.89813 1.22240 1.00512 0.99250 1.00197 1.21829 0.96080 0.95787 1.02258 0.88942 0.92772 0.93071 0.88278 0.92994 0.88099 0.89183 0.85921 0.84972 0.92498 0.90102 0.88200 0.89211 0.91535 0.89954 0.89621 0.92595 0.88512 0.93008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 10.82 113.37 1.23 1.53 16 2 O -0.41 -8.64 10.35 -148.98 -1.54 -10.18 16 3 C 0.09 1.88 2.37 30.62 0.07 1.95 16 4 H 0.09 1.34 6.14 -2.39 -0.01 1.32 16 5 C -0.15 -3.16 5.69 30.67 0.17 -2.99 16 6 C 0.11 2.55 6.02 86.36 0.52 3.07 16 7 N -1.00 -29.98 2.93 -491.50 -1.44 -31.42 16 8 S 2.62 107.62 5.19 -56.49 -0.29 107.32 16 9 O -0.99 -43.59 16.59 -127.65 -2.12 -45.71 16 10 O -0.99 -49.35 16.24 -127.65 -2.07 -51.42 16 11 C -0.55 -22.50 6.03 71.98 0.43 -22.07 16 12 C 0.01 0.52 1.26 -52.93 -0.07 0.45 16 13 C -0.54 -29.94 8.17 25.60 0.21 -29.73 16 14 H 0.05 2.67 7.82 -2.91 -0.02 2.64 16 15 C 0.04 2.47 5.42 84.65 0.46 2.93 16 16 N -0.89 -48.79 13.10 21.45 0.28 -48.51 16 17 Si 0.93 44.30 29.54 68.60 2.03 46.33 16 18 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 19 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 20 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 21 C -0.20 -8.43 9.96 30.59 0.30 -8.13 16 22 C -0.14 -6.21 9.67 30.59 0.30 -5.91 16 23 C 0.14 3.77 3.19 44.83 0.14 3.92 16 24 H 0.08 2.70 6.85 -2.38 -0.02 2.68 16 25 C -0.16 -3.26 9.02 71.98 0.65 -2.61 16 26 C -0.12 -2.87 5.17 30.53 0.16 -2.72 16 27 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.05 0.56 8.09 -2.39 -0.02 0.54 16 29 H 0.05 0.55 7.85 -2.39 -0.02 0.54 16 30 H 0.10 1.54 7.85 -2.39 -0.02 1.52 16 31 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.10 1.60 7.52 -2.39 -0.02 1.58 16 33 H 0.09 2.20 6.86 -2.39 -0.02 2.18 16 34 H 0.12 5.37 8.14 -2.40 -0.02 5.35 16 35 H 0.13 4.34 8.09 -2.39 -0.02 4.32 16 36 H 0.27 13.82 8.32 -92.71 -0.77 13.05 16 37 H 0.08 3.50 8.14 -2.39 -0.02 3.48 16 38 H 0.10 3.75 8.14 -2.39 -0.02 3.73 16 39 H 0.09 3.51 8.14 -2.39 -0.02 3.49 16 40 H 0.07 3.16 8.14 -2.39 -0.02 3.15 16 41 H 0.08 1.24 5.74 -2.39 -0.01 1.22 16 42 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 44 H 0.10 1.94 8.14 -2.38 -0.02 1.92 16 45 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -71.18 368.73 0.38 -70.80 By element: Atomic # 1 Polarization: 22.13 SS G_CDS: 0.96 Total: 23.09 kcal Atomic # 6 Polarization: -64.88 SS G_CDS: 4.58 Total: -60.30 kcal Atomic # 7 Polarization: -78.77 SS G_CDS: -1.16 Total: -79.93 kcal Atomic # 8 Polarization: -101.57 SS G_CDS: -5.73 Total: -107.31 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Atomic # 16 Polarization: 107.62 SS G_CDS: -0.29 Total: 107.32 kcal Total: -71.18 0.38 -70.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364852855.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.406 kcal (2) G-P(sol) polarization free energy of solvation -71.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds