Wall clock time and date at job start Tue Mar 31 2020 12:55:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42895 * 1
3 3 C 1.42902 * 113.99903 * 2 1
4 4 H 1.09000 * 109.44787 * 329.95917 * 3 2 1
5 5 C 1.53039 * 109.48903 * 89.91262 * 3 2 1
6 6 C 1.53184 * 109.33925 * 181.35155 * 5 3 2
7 7 N 1.46925 * 108.78046 * 305.38099 * 6 5 3
8 8 S 1.65597 * 120.63465 * 233.59108 * 7 6 5
9 9 O 1.42096 * 104.27724 * 9.63960 * 8 7 6
10 10 O 1.42102 * 104.27874 * 137.50129 * 8 7 6
11 11 C 1.81401 * 104.44688 * 253.57120 * 8 7 6
12 12 C 1.53004 * 109.46960 * 173.20078 * 11 8 7
13 13 C 1.50697 * 115.55295 * 54.45834 * 12 11 8
14 14 H 1.08002 * 119.99688 * 267.37927 * 13 12 11
15 15 C 1.37876 * 120.00065 * 87.37146 * 13 12 11
16 16 N 1.31518 * 119.99984 * 177.74304 * 15 13 12
17 17 Si 1.86804 * 119.99923 * 357.75041 * 15 13 12
18 18 H 1.48493 * 109.47101 * 84.56566 * 17 15 13
19 19 H 1.48504 * 109.46923 * 204.56764 * 17 15 13
20 20 H 1.48500 * 109.47043 * 324.56563 * 17 15 13
21 21 C 1.53003 * 117.49761 * 268.78643 * 12 11 8
22 22 C 1.52998 * 117.49650 * 200.12709 * 12 11 8
23 23 C 1.46927 * 118.73690 * 53.60575 * 7 6 5
24 24 H 1.09005 * 109.58779 * 66.18137 * 23 7 6
25 25 C 1.53001 * 109.70830 * 186.53872 * 23 7 6
26 26 C 1.53045 * 109.45855 * 209.99808 * 3 2 1
27 27 H 1.08999 * 109.47531 * 180.02562 * 1 2 3
28 28 H 1.09003 * 109.47593 * 300.00263 * 1 2 3
29 29 H 1.09006 * 109.47413 * 60.00151 * 1 2 3
30 30 H 1.09008 * 109.46913 * 61.40256 * 5 3 2
31 31 H 1.08992 * 109.52366 * 301.33928 * 5 3 2
32 32 H 1.09006 * 109.59028 * 185.59246 * 6 5 3
33 33 H 1.09004 * 109.58885 * 65.16667 * 6 5 3
34 34 H 1.08997 * 109.47262 * 293.19734 * 11 8 7
35 35 H 1.09004 * 109.47221 * 53.20195 * 11 8 7
36 36 H 0.97004 * 119.99500 * 179.97438 * 16 15 13
37 37 H 1.08998 * 117.50030 * 0.02562 * 21 12 11
38 38 H 1.08998 * 117.50001 * 145.02081 * 21 12 11
39 39 H 1.09003 * 117.50021 * 214.97449 * 22 12 11
40 40 H 1.08997 * 117.50500 * 359.97438 * 22 12 11
41 41 H 1.08992 * 109.47478 * 195.44497 * 25 23 7
42 42 H 1.09008 * 109.46803 * 315.43958 * 25 23 7
43 43 H 1.09000 * 109.47220 * 75.43429 * 25 23 7
44 44 H 1.09003 * 109.49368 * 58.65797 * 26 3 2
45 45 H 1.09002 * 109.49439 * 298.60059 * 26 3 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3055 0.0000
4 1 1.3449 1.9989 -0.5145
5 6 2.2158 1.7728 1.4427
6 6 2.8076 3.1857 1.4388
7 7 4.0308 3.1840 0.6250
8 16 5.4578 3.7507 1.2453
9 8 5.1896 3.9361 2.6283
10 8 6.4286 2.8102 0.8069
11 6 5.7047 5.3496 0.4248
12 6 6.9130 6.0578 1.0409
13 6 8.1950 5.2657 1.0515
14 1 8.4518 4.6655 1.9119
15 6 9.0398 5.3071 -0.0373
16 7 10.1796 4.6513 -0.0105
17 14 8.5658 6.2946 -1.5504
18 1 8.9597 7.7135 -1.3588
19 1 9.2635 5.7434 -2.7398
20 1 7.0973 6.2119 -1.7554
21 6 6.6549 6.9998 2.2186
22 6 7.0195 7.5716 0.8463
23 6 3.9639 2.6702 -0.7499
24 1 3.3367 3.3252 -1.3547
25 6 5.3710 2.6117 -1.3480
26 6 3.3592 1.2630 -0.7215
27 1 -0.3634 -1.0276 0.0005
28 1 -0.3634 0.5139 0.8900
29 1 -0.3634 0.5138 -0.8900
30 1 2.9002 1.0932 1.9507
31 1 1.2581 1.7809 1.9630
32 1 3.0480 3.4841 2.4593
33 1 2.0861 3.8829 1.0125
34 1 5.8812 5.1889 -0.6387
35 1 4.8158 5.9667 0.5565
36 1 10.7738 4.6802 -0.7767
37 1 5.6245 7.1147 2.5548
38 1 7.4125 7.0469 3.0008
39 1 8.0169 7.9947 0.7263
40 1 6.2291 8.0630 0.2790
41 1 5.3016 2.4988 -2.4298
42 1 5.9044 3.5327 -1.1123
43 1 5.9094 1.7623 -0.9276
44 1 3.2149 0.9082 -1.7420
45 1 4.0329 0.5880 -0.1936
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001364852857.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:55:43
Heat of formation + Delta-G solvation = -80.554294 kcal
Electronic energy + Delta-G solvation = -26889.008190 eV
Core-core repulsion = 23228.206230 eV
Total energy + Delta-G solvation = -3660.801960 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 317.149 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-39.41459 -37.15533 -37.14023 -36.47867 -35.05855 -32.47588 -32.18166 -31.52257
-28.61713 -27.44474 -26.44142 -25.55093 -23.72450 -22.09761 -21.71988 -20.65224
-19.35415 -18.26836 -16.98870 -16.73857 -16.54335 -16.04243 -15.40513 -15.39274
-15.18074 -15.07122 -14.51170 -14.18281 -13.88480 -13.42892 -13.27987 -13.03809
-12.83957 -12.66170 -12.49467 -12.37861 -12.21003 -11.68114 -11.58773 -11.33694
-11.25632 -11.13882 -11.11201 -10.98293 -10.86046 -10.65443 -10.59254 -10.37572
-10.11033 -10.07122 -9.75296 -9.65771 -9.17364 -8.92121 -8.67689 -8.44851
-6.18291 -4.27717 0.94322 3.19902 3.23639 3.29270 3.31400 3.55843
4.32394 4.46632 4.55799 4.66302 4.76904 4.84648 4.87734 5.01247
5.06924 5.09126 5.12132 5.15046 5.25222 5.29626 5.39554 5.43880
5.48395 5.58020 5.68440 5.71325 5.83765 5.84591 5.92629 6.01245
6.03861 6.08787 6.16880 6.27340 6.31127 6.40113 6.59005 6.72730
6.82965 6.87968 7.04188 7.04268 7.57378 8.34513 8.85453 9.42582
10.93234
Molecular weight = 317.15amu
Principal moments of inertia in cm(-1)
A = 0.022256 B = 0.004664 C = 0.004315
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1257.767530 B = 6001.855099 C = 6487.628535
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.031 3.969
2 O -0.385 6.385
3 C 0.092 3.908
4 H 0.060 0.940
5 C -0.153 4.153
6 C 0.118 3.882
7 N -1.011 6.011
8 S 2.620 3.380
9 O -0.969 6.969
10 O -0.928 6.928
11 C -0.585 4.585
12 C 0.004 3.996
13 C -0.518 4.518
14 H 0.086 0.914
15 C 0.095 3.905
16 N -0.877 5.877
17 Si 0.875 3.125
18 H -0.273 1.273
19 H -0.290 1.290
20 H -0.261 1.261
21 C -0.174 4.174
22 C -0.188 4.188
23 C 0.158 3.842
24 H 0.071 0.929
25 C -0.187 4.187
26 C -0.124 4.124
27 H 0.083 0.917
28 H 0.040 0.960
29 H 0.039 0.961
30 H 0.078 0.922
31 H 0.072 0.928
32 H 0.103 0.897
33 H 0.063 0.937
34 H 0.127 0.873
35 H 0.105 0.895
36 H 0.268 0.732
37 H 0.078 0.922
38 H 0.095 0.905
39 H 0.093 0.907
40 H 0.074 0.926
41 H 0.070 0.930
42 H 0.066 0.934
43 H 0.100 0.900
44 H 0.078 0.922
45 H 0.082 0.918
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -19.240 -3.005 -3.119 19.722
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.066 4.066
2 O -0.304 6.304
3 C 0.034 3.966
4 H 0.078 0.922
5 C -0.192 4.192
6 C -0.007 4.007
7 N -0.849 5.849
8 S 2.717 3.283
9 O -0.960 6.960
10 O -0.918 6.918
11 C -0.716 4.716
12 C 0.001 3.999
13 C -0.555 4.555
14 H 0.104 0.896
15 C -0.111 4.111
16 N -0.512 5.512
17 Si 0.702 3.298
18 H -0.199 1.199
19 H -0.216 1.216
20 H -0.185 1.185
21 C -0.211 4.211
22 C -0.227 4.227
23 C 0.052 3.948
24 H 0.089 0.911
25 C -0.245 4.245
26 C -0.163 4.163
27 H 0.102 0.898
28 H 0.059 0.941
29 H 0.058 0.942
30 H 0.096 0.904
31 H 0.091 0.909
32 H 0.121 0.879
33 H 0.081 0.919
34 H 0.145 0.855
35 H 0.123 0.877
36 H 0.078 0.922
37 H 0.096 0.904
38 H 0.113 0.887
39 H 0.112 0.888
40 H 0.093 0.907
41 H 0.089 0.911
42 H 0.085 0.915
43 H 0.118 0.882
44 H 0.097 0.903
45 H 0.100 0.900
Dipole moment (debyes) X Y Z Total
from point charges -18.415 -3.697 -2.579 18.959
hybrid contribution -0.707 1.347 -1.410 2.075
sum -19.122 -2.350 -3.990 19.675
Atomic orbital electron populations
1.22763 0.81478 1.02523 0.99797 1.87935 1.19300 1.28094 1.95059
1.22110 0.94827 0.84157 0.95513 0.92157 1.22376 1.01732 0.97656
0.97464 1.21359 0.86231 0.96252 0.96907 1.58380 1.26429 1.77844
1.22199 1.04895 0.72065 0.77127 0.74174 1.93454 1.84067 1.87586
1.30869 1.93627 1.58305 1.57951 1.81927 1.30485 1.06104 1.21578
1.13441 1.18824 0.93177 0.89305 0.98590 1.20343 1.01227 1.29200
1.04753 0.89562 1.24917 0.94146 0.94154 0.97877 1.69882 1.09776
1.40607 1.30939 0.86968 0.79482 0.80712 0.82617 1.19853 1.21646
1.18545 1.22964 1.00641 1.05703 0.91784 1.23004 1.01598 0.97803
1.00256 1.20886 0.98079 0.93905 0.81939 0.91071 1.22712 0.94252
1.06062 1.01482 1.22028 0.95442 0.97530 1.01256 0.89838 0.94136
0.94214 0.90362 0.90908 0.87876 0.91892 0.85520 0.87673 0.92200
0.90369 0.88677 0.88848 0.90736 0.91126 0.91494 0.88170 0.90302
0.89959
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.25 10.82 101.05 1.09 1.34 16
2 O -0.39 -4.47 10.35 -35.23 -0.36 -4.84 16
3 C 0.09 1.02 2.57 -26.69 -0.07 0.95 16
4 H 0.06 0.57 7.79 -51.93 -0.40 0.16 16
5 C -0.15 -1.76 5.69 -26.62 -0.15 -1.91 16
6 C 0.12 1.48 6.48 -3.72 -0.02 1.46 16
7 N -1.01 -15.39 3.20 -106.47 -0.34 -15.73 16
8 S 2.62 52.89 4.33 -107.50 -0.47 52.43 16
9 O -0.97 -21.28 16.25 -57.54 -0.94 -22.22 16
10 O -0.93 -21.91 13.49 -57.54 -0.78 -22.68 16
11 C -0.59 -11.49 5.62 37.16 0.21 -11.28 16
12 C 0.00 0.08 0.95 -155.66 -0.15 -0.06 16
13 C -0.52 -14.39 8.18 -34.44 -0.28 -14.67 16
14 H 0.09 2.67 8.06 -52.49 -0.42 2.24 16
15 C 0.09 2.68 5.47 -17.82 -0.10 2.58 16
16 N -0.88 -26.42 13.96 55.43 0.77 -25.65 16
17 Si 0.87 20.90 24.98 -169.99 -4.25 16.65 16
18 H -0.27 -6.33 7.00 56.52 0.40 -5.93 16
19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16
20 H -0.26 -5.70 5.59 56.52 0.32 -5.38 16
21 C -0.17 -3.56 9.93 -26.69 -0.26 -3.82 16
22 C -0.19 -3.88 7.67 -26.69 -0.20 -4.09 16
23 C 0.16 2.10 3.50 -67.60 -0.24 1.87 16
24 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16
25 C -0.19 -2.91 7.73 37.16 0.29 -2.63 16
26 C -0.12 -1.51 4.99 -26.61 -0.13 -1.64 16
27 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16
28 H 0.04 0.29 7.84 -51.93 -0.41 -0.12 16
29 H 0.04 0.27 8.08 -51.93 -0.42 -0.15 16
30 H 0.08 1.03 8.14 -51.92 -0.42 0.61 16
31 H 0.07 0.68 7.84 -51.93 -0.41 0.27 16
32 H 0.10 1.39 6.55 -51.93 -0.34 1.05 16
33 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16
34 H 0.13 2.43 4.35 -51.93 -0.23 2.21 16
35 H 0.10 1.67 8.09 -51.92 -0.42 1.25 16
36 H 0.27 7.51 8.31 -40.82 -0.34 7.18 16
37 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16
38 H 0.09 1.96 8.14 -51.93 -0.42 1.54 16
39 H 0.09 2.01 7.20 -51.93 -0.37 1.64 16
40 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16
41 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16
42 H 0.07 1.19 3.92 -51.92 -0.20 0.99 16
43 H 0.10 1.74 6.74 -51.93 -0.35 1.39 16
44 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16
45 H 0.08 1.15 8.06 -51.93 -0.42 0.73 16
LS Contribution 351.98 15.07 5.30 5.30
Total: -1.00 -33.56 351.98 -8.50 -42.06
By element:
Atomic # 1 Polarization: 14.01 SS G_CDS: -7.43 Total: 6.58 kcal
Atomic # 6 Polarization: -31.89 SS G_CDS: -0.02 Total: -31.91 kcal
Atomic # 7 Polarization: -41.81 SS G_CDS: 0.43 Total: -41.38 kcal
Atomic # 8 Polarization: -47.66 SS G_CDS: -2.08 Total: -49.74 kcal
Atomic # 14 Polarization: 20.90 SS G_CDS: -4.25 Total: 16.65 kcal
Atomic # 16 Polarization: 52.89 SS G_CDS: -0.47 Total: 52.43 kcal
Total LS contribution 5.30 Total: 5.30 kcal
Total: -33.56 -8.50 -42.06 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001364852857.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -38.496 kcal
(2) G-P(sol) polarization free energy of solvation -33.562 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.058 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.496 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.058 kcal
(6) G-S(sol) free energy of system = (1) + (5) -80.554 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.66 seconds