Wall clock time and date at job start Tue Mar 31 2020 12:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42902 * 113.99903 * 2 1 4 4 H 1.09000 * 109.44787 * 329.95917 * 3 2 1 5 5 C 1.53039 * 109.48903 * 89.91262 * 3 2 1 6 6 C 1.53184 * 109.33925 * 181.35155 * 5 3 2 7 7 N 1.46925 * 108.78046 * 305.38099 * 6 5 3 8 8 S 1.65597 * 120.63465 * 233.59108 * 7 6 5 9 9 O 1.42096 * 104.27724 * 9.63960 * 8 7 6 10 10 O 1.42102 * 104.27874 * 137.50129 * 8 7 6 11 11 C 1.81401 * 104.44688 * 253.57120 * 8 7 6 12 12 C 1.53004 * 109.46960 * 173.20078 * 11 8 7 13 13 C 1.50697 * 115.55295 * 54.45834 * 12 11 8 14 14 H 1.08002 * 119.99688 * 267.37927 * 13 12 11 15 15 C 1.37876 * 120.00065 * 87.37146 * 13 12 11 16 16 N 1.31518 * 119.99984 * 177.74304 * 15 13 12 17 17 Si 1.86804 * 119.99923 * 357.75041 * 15 13 12 18 18 H 1.48493 * 109.47101 * 84.56566 * 17 15 13 19 19 H 1.48504 * 109.46923 * 204.56764 * 17 15 13 20 20 H 1.48500 * 109.47043 * 324.56563 * 17 15 13 21 21 C 1.53003 * 117.49761 * 268.78643 * 12 11 8 22 22 C 1.52998 * 117.49650 * 200.12709 * 12 11 8 23 23 C 1.46927 * 118.73690 * 53.60575 * 7 6 5 24 24 H 1.09005 * 109.58779 * 66.18137 * 23 7 6 25 25 C 1.53001 * 109.70830 * 186.53872 * 23 7 6 26 26 C 1.53045 * 109.45855 * 209.99808 * 3 2 1 27 27 H 1.08999 * 109.47531 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47593 * 300.00263 * 1 2 3 29 29 H 1.09006 * 109.47413 * 60.00151 * 1 2 3 30 30 H 1.09008 * 109.46913 * 61.40256 * 5 3 2 31 31 H 1.08992 * 109.52366 * 301.33928 * 5 3 2 32 32 H 1.09006 * 109.59028 * 185.59246 * 6 5 3 33 33 H 1.09004 * 109.58885 * 65.16667 * 6 5 3 34 34 H 1.08997 * 109.47262 * 293.19734 * 11 8 7 35 35 H 1.09004 * 109.47221 * 53.20195 * 11 8 7 36 36 H 0.97004 * 119.99500 * 179.97438 * 16 15 13 37 37 H 1.08998 * 117.50030 * 0.02562 * 21 12 11 38 38 H 1.08998 * 117.50001 * 145.02081 * 21 12 11 39 39 H 1.09003 * 117.50021 * 214.97449 * 22 12 11 40 40 H 1.08997 * 117.50500 * 359.97438 * 22 12 11 41 41 H 1.08992 * 109.47478 * 195.44497 * 25 23 7 42 42 H 1.09008 * 109.46803 * 315.43958 * 25 23 7 43 43 H 1.09000 * 109.47220 * 75.43429 * 25 23 7 44 44 H 1.09003 * 109.49368 * 58.65797 * 26 3 2 45 45 H 1.09002 * 109.49439 * 298.60059 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9989 -0.5145 5 6 2.2158 1.7728 1.4427 6 6 2.8076 3.1857 1.4388 7 7 4.0308 3.1840 0.6250 8 16 5.4578 3.7507 1.2453 9 8 5.1896 3.9361 2.6283 10 8 6.4286 2.8102 0.8069 11 6 5.7047 5.3496 0.4248 12 6 6.9130 6.0578 1.0409 13 6 8.1950 5.2657 1.0515 14 1 8.4518 4.6655 1.9119 15 6 9.0398 5.3071 -0.0373 16 7 10.1796 4.6513 -0.0105 17 14 8.5658 6.2946 -1.5504 18 1 8.9597 7.7135 -1.3588 19 1 9.2635 5.7434 -2.7398 20 1 7.0973 6.2119 -1.7554 21 6 6.6549 6.9998 2.2186 22 6 7.0195 7.5716 0.8463 23 6 3.9639 2.6702 -0.7499 24 1 3.3367 3.3252 -1.3547 25 6 5.3710 2.6117 -1.3480 26 6 3.3592 1.2630 -0.7215 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 2.9002 1.0932 1.9507 31 1 1.2581 1.7809 1.9630 32 1 3.0480 3.4841 2.4593 33 1 2.0861 3.8829 1.0125 34 1 5.8812 5.1889 -0.6387 35 1 4.8158 5.9667 0.5565 36 1 10.7738 4.6802 -0.7767 37 1 5.6245 7.1147 2.5548 38 1 7.4125 7.0469 3.0008 39 1 8.0169 7.9947 0.7263 40 1 6.2291 8.0630 0.2790 41 1 5.3016 2.4988 -2.4298 42 1 5.9044 3.5327 -1.1123 43 1 5.9094 1.7623 -0.9276 44 1 3.2149 0.9082 -1.7420 45 1 4.0329 0.5880 -0.1936 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364852857.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:43 Heat of formation + Delta-G solvation = -80.554294 kcal Electronic energy + Delta-G solvation = -26889.008190 eV Core-core repulsion = 23228.206230 eV Total energy + Delta-G solvation = -3660.801960 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.41459 -37.15533 -37.14023 -36.47867 -35.05855 -32.47588 -32.18166 -31.52257 -28.61713 -27.44474 -26.44142 -25.55093 -23.72450 -22.09761 -21.71988 -20.65224 -19.35415 -18.26836 -16.98870 -16.73857 -16.54335 -16.04243 -15.40513 -15.39274 -15.18074 -15.07122 -14.51170 -14.18281 -13.88480 -13.42892 -13.27987 -13.03809 -12.83957 -12.66170 -12.49467 -12.37861 -12.21003 -11.68114 -11.58773 -11.33694 -11.25632 -11.13882 -11.11201 -10.98293 -10.86046 -10.65443 -10.59254 -10.37572 -10.11033 -10.07122 -9.75296 -9.65771 -9.17364 -8.92121 -8.67689 -8.44851 -6.18291 -4.27717 0.94322 3.19902 3.23639 3.29270 3.31400 3.55843 4.32394 4.46632 4.55799 4.66302 4.76904 4.84648 4.87734 5.01247 5.06924 5.09126 5.12132 5.15046 5.25222 5.29626 5.39554 5.43880 5.48395 5.58020 5.68440 5.71325 5.83765 5.84591 5.92629 6.01245 6.03861 6.08787 6.16880 6.27340 6.31127 6.40113 6.59005 6.72730 6.82965 6.87968 7.04188 7.04268 7.57378 8.34513 8.85453 9.42582 10.93234 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.022256 B = 0.004664 C = 0.004315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.767530 B = 6001.855099 C = 6487.628535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.092 3.908 4 H 0.060 0.940 5 C -0.153 4.153 6 C 0.118 3.882 7 N -1.011 6.011 8 S 2.620 3.380 9 O -0.969 6.969 10 O -0.928 6.928 11 C -0.585 4.585 12 C 0.004 3.996 13 C -0.518 4.518 14 H 0.086 0.914 15 C 0.095 3.905 16 N -0.877 5.877 17 Si 0.875 3.125 18 H -0.273 1.273 19 H -0.290 1.290 20 H -0.261 1.261 21 C -0.174 4.174 22 C -0.188 4.188 23 C 0.158 3.842 24 H 0.071 0.929 25 C -0.187 4.187 26 C -0.124 4.124 27 H 0.083 0.917 28 H 0.040 0.960 29 H 0.039 0.961 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.103 0.897 33 H 0.063 0.937 34 H 0.127 0.873 35 H 0.105 0.895 36 H 0.268 0.732 37 H 0.078 0.922 38 H 0.095 0.905 39 H 0.093 0.907 40 H 0.074 0.926 41 H 0.070 0.930 42 H 0.066 0.934 43 H 0.100 0.900 44 H 0.078 0.922 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.240 -3.005 -3.119 19.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.304 6.304 3 C 0.034 3.966 4 H 0.078 0.922 5 C -0.192 4.192 6 C -0.007 4.007 7 N -0.849 5.849 8 S 2.717 3.283 9 O -0.960 6.960 10 O -0.918 6.918 11 C -0.716 4.716 12 C 0.001 3.999 13 C -0.555 4.555 14 H 0.104 0.896 15 C -0.111 4.111 16 N -0.512 5.512 17 Si 0.702 3.298 18 H -0.199 1.199 19 H -0.216 1.216 20 H -0.185 1.185 21 C -0.211 4.211 22 C -0.227 4.227 23 C 0.052 3.948 24 H 0.089 0.911 25 C -0.245 4.245 26 C -0.163 4.163 27 H 0.102 0.898 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.096 0.904 31 H 0.091 0.909 32 H 0.121 0.879 33 H 0.081 0.919 34 H 0.145 0.855 35 H 0.123 0.877 36 H 0.078 0.922 37 H 0.096 0.904 38 H 0.113 0.887 39 H 0.112 0.888 40 H 0.093 0.907 41 H 0.089 0.911 42 H 0.085 0.915 43 H 0.118 0.882 44 H 0.097 0.903 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -18.415 -3.697 -2.579 18.959 hybrid contribution -0.707 1.347 -1.410 2.075 sum -19.122 -2.350 -3.990 19.675 Atomic orbital electron populations 1.22763 0.81478 1.02523 0.99797 1.87935 1.19300 1.28094 1.95059 1.22110 0.94827 0.84157 0.95513 0.92157 1.22376 1.01732 0.97656 0.97464 1.21359 0.86231 0.96252 0.96907 1.58380 1.26429 1.77844 1.22199 1.04895 0.72065 0.77127 0.74174 1.93454 1.84067 1.87586 1.30869 1.93627 1.58305 1.57951 1.81927 1.30485 1.06104 1.21578 1.13441 1.18824 0.93177 0.89305 0.98590 1.20343 1.01227 1.29200 1.04753 0.89562 1.24917 0.94146 0.94154 0.97877 1.69882 1.09776 1.40607 1.30939 0.86968 0.79482 0.80712 0.82617 1.19853 1.21646 1.18545 1.22964 1.00641 1.05703 0.91784 1.23004 1.01598 0.97803 1.00256 1.20886 0.98079 0.93905 0.81939 0.91071 1.22712 0.94252 1.06062 1.01482 1.22028 0.95442 0.97530 1.01256 0.89838 0.94136 0.94214 0.90362 0.90908 0.87876 0.91892 0.85520 0.87673 0.92200 0.90369 0.88677 0.88848 0.90736 0.91126 0.91494 0.88170 0.90302 0.89959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.82 101.05 1.09 1.34 16 2 O -0.39 -4.47 10.35 -35.23 -0.36 -4.84 16 3 C 0.09 1.02 2.57 -26.69 -0.07 0.95 16 4 H 0.06 0.57 7.79 -51.93 -0.40 0.16 16 5 C -0.15 -1.76 5.69 -26.62 -0.15 -1.91 16 6 C 0.12 1.48 6.48 -3.72 -0.02 1.46 16 7 N -1.01 -15.39 3.20 -106.47 -0.34 -15.73 16 8 S 2.62 52.89 4.33 -107.50 -0.47 52.43 16 9 O -0.97 -21.28 16.25 -57.54 -0.94 -22.22 16 10 O -0.93 -21.91 13.49 -57.54 -0.78 -22.68 16 11 C -0.59 -11.49 5.62 37.16 0.21 -11.28 16 12 C 0.00 0.08 0.95 -155.66 -0.15 -0.06 16 13 C -0.52 -14.39 8.18 -34.44 -0.28 -14.67 16 14 H 0.09 2.67 8.06 -52.49 -0.42 2.24 16 15 C 0.09 2.68 5.47 -17.82 -0.10 2.58 16 16 N -0.88 -26.42 13.96 55.43 0.77 -25.65 16 17 Si 0.87 20.90 24.98 -169.99 -4.25 16.65 16 18 H -0.27 -6.33 7.00 56.52 0.40 -5.93 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.26 -5.70 5.59 56.52 0.32 -5.38 16 21 C -0.17 -3.56 9.93 -26.69 -0.26 -3.82 16 22 C -0.19 -3.88 7.67 -26.69 -0.20 -4.09 16 23 C 0.16 2.10 3.50 -67.60 -0.24 1.87 16 24 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 25 C -0.19 -2.91 7.73 37.16 0.29 -2.63 16 26 C -0.12 -1.51 4.99 -26.61 -0.13 -1.64 16 27 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.04 0.29 7.84 -51.93 -0.41 -0.12 16 29 H 0.04 0.27 8.08 -51.93 -0.42 -0.15 16 30 H 0.08 1.03 8.14 -51.92 -0.42 0.61 16 31 H 0.07 0.68 7.84 -51.93 -0.41 0.27 16 32 H 0.10 1.39 6.55 -51.93 -0.34 1.05 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.13 2.43 4.35 -51.93 -0.23 2.21 16 35 H 0.10 1.67 8.09 -51.92 -0.42 1.25 16 36 H 0.27 7.51 8.31 -40.82 -0.34 7.18 16 37 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 38 H 0.09 1.96 8.14 -51.93 -0.42 1.54 16 39 H 0.09 2.01 7.20 -51.93 -0.37 1.64 16 40 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 41 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.07 1.19 3.92 -51.92 -0.20 0.99 16 43 H 0.10 1.74 6.74 -51.93 -0.35 1.39 16 44 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.08 1.15 8.06 -51.93 -0.42 0.73 16 LS Contribution 351.98 15.07 5.30 5.30 Total: -1.00 -33.56 351.98 -8.50 -42.06 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -7.43 Total: 6.58 kcal Atomic # 6 Polarization: -31.89 SS G_CDS: -0.02 Total: -31.91 kcal Atomic # 7 Polarization: -41.81 SS G_CDS: 0.43 Total: -41.38 kcal Atomic # 8 Polarization: -47.66 SS G_CDS: -2.08 Total: -49.74 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -4.25 Total: 16.65 kcal Atomic # 16 Polarization: 52.89 SS G_CDS: -0.47 Total: 52.43 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.56 -8.50 -42.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364852857.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.496 kcal (2) G-P(sol) polarization free energy of solvation -33.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds