Wall clock time and date at job start Tue Mar 31 2020 12:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42902 * 113.99903 * 2 1 4 4 H 1.09000 * 109.44787 * 329.95917 * 3 2 1 5 5 C 1.53039 * 109.48903 * 89.91262 * 3 2 1 6 6 C 1.53184 * 109.33925 * 181.35155 * 5 3 2 7 7 N 1.46925 * 108.78046 * 305.38099 * 6 5 3 8 8 S 1.65597 * 120.63465 * 233.59108 * 7 6 5 9 9 O 1.42096 * 104.27724 * 9.63960 * 8 7 6 10 10 O 1.42102 * 104.27874 * 137.50129 * 8 7 6 11 11 C 1.81401 * 104.44688 * 253.57120 * 8 7 6 12 12 C 1.53004 * 109.46960 * 173.20078 * 11 8 7 13 13 C 1.50697 * 115.55295 * 54.45834 * 12 11 8 14 14 H 1.08002 * 119.99688 * 267.37927 * 13 12 11 15 15 C 1.37876 * 120.00065 * 87.37146 * 13 12 11 16 16 N 1.31518 * 119.99984 * 177.74304 * 15 13 12 17 17 Si 1.86804 * 119.99923 * 357.75041 * 15 13 12 18 18 H 1.48493 * 109.47101 * 84.56566 * 17 15 13 19 19 H 1.48504 * 109.46923 * 204.56764 * 17 15 13 20 20 H 1.48500 * 109.47043 * 324.56563 * 17 15 13 21 21 C 1.53003 * 117.49761 * 268.78643 * 12 11 8 22 22 C 1.52998 * 117.49650 * 200.12709 * 12 11 8 23 23 C 1.46927 * 118.73690 * 53.60575 * 7 6 5 24 24 H 1.09005 * 109.58779 * 66.18137 * 23 7 6 25 25 C 1.53001 * 109.70830 * 186.53872 * 23 7 6 26 26 C 1.53045 * 109.45855 * 209.99808 * 3 2 1 27 27 H 1.08999 * 109.47531 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47593 * 300.00263 * 1 2 3 29 29 H 1.09006 * 109.47413 * 60.00151 * 1 2 3 30 30 H 1.09008 * 109.46913 * 61.40256 * 5 3 2 31 31 H 1.08992 * 109.52366 * 301.33928 * 5 3 2 32 32 H 1.09006 * 109.59028 * 185.59246 * 6 5 3 33 33 H 1.09004 * 109.58885 * 65.16667 * 6 5 3 34 34 H 1.08997 * 109.47262 * 293.19734 * 11 8 7 35 35 H 1.09004 * 109.47221 * 53.20195 * 11 8 7 36 36 H 0.97004 * 119.99500 * 179.97438 * 16 15 13 37 37 H 1.08998 * 117.50030 * 0.02562 * 21 12 11 38 38 H 1.08998 * 117.50001 * 145.02081 * 21 12 11 39 39 H 1.09003 * 117.50021 * 214.97449 * 22 12 11 40 40 H 1.08997 * 117.50500 * 359.97438 * 22 12 11 41 41 H 1.08992 * 109.47478 * 195.44497 * 25 23 7 42 42 H 1.09008 * 109.46803 * 315.43958 * 25 23 7 43 43 H 1.09000 * 109.47220 * 75.43429 * 25 23 7 44 44 H 1.09003 * 109.49368 * 58.65797 * 26 3 2 45 45 H 1.09002 * 109.49439 * 298.60059 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9989 -0.5145 5 6 2.2158 1.7728 1.4427 6 6 2.8076 3.1857 1.4388 7 7 4.0308 3.1840 0.6250 8 16 5.4578 3.7507 1.2453 9 8 5.1896 3.9361 2.6283 10 8 6.4286 2.8102 0.8069 11 6 5.7047 5.3496 0.4248 12 6 6.9130 6.0578 1.0409 13 6 8.1950 5.2657 1.0515 14 1 8.4518 4.6655 1.9119 15 6 9.0398 5.3071 -0.0373 16 7 10.1796 4.6513 -0.0105 17 14 8.5658 6.2946 -1.5504 18 1 8.9597 7.7135 -1.3588 19 1 9.2635 5.7434 -2.7398 20 1 7.0973 6.2119 -1.7554 21 6 6.6549 6.9998 2.2186 22 6 7.0195 7.5716 0.8463 23 6 3.9639 2.6702 -0.7499 24 1 3.3367 3.3252 -1.3547 25 6 5.3710 2.6117 -1.3480 26 6 3.3592 1.2630 -0.7215 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 2.9002 1.0932 1.9507 31 1 1.2581 1.7809 1.9630 32 1 3.0480 3.4841 2.4593 33 1 2.0861 3.8829 1.0125 34 1 5.8812 5.1889 -0.6387 35 1 4.8158 5.9667 0.5565 36 1 10.7738 4.6802 -0.7767 37 1 5.6245 7.1147 2.5548 38 1 7.4125 7.0469 3.0008 39 1 8.0169 7.9947 0.7263 40 1 6.2291 8.0630 0.2790 41 1 5.3016 2.4988 -2.4298 42 1 5.9044 3.5327 -1.1123 43 1 5.9094 1.7623 -0.9276 44 1 3.2149 0.9082 -1.7420 45 1 4.0329 0.5880 -0.1936 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364852857.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:42 Heat of formation + Delta-G solvation = -106.123654 kcal Electronic energy + Delta-G solvation = -26890.116961 eV Core-core repulsion = 23228.206230 eV Total energy + Delta-G solvation = -3661.910730 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.33624 -38.85181 -38.30864 -37.85582 -36.70454 -34.30468 -33.51995 -32.51315 -30.16559 -28.41284 -27.65766 -27.17105 -24.69825 -23.37655 -23.11637 -21.65015 -21.14059 -19.73461 -18.64204 -18.15391 -17.47519 -17.38315 -16.98849 -16.77390 -16.22991 -16.03671 -15.84507 -15.51363 -15.28626 -14.85198 -14.60204 -14.54745 -14.12691 -14.09836 -13.81744 -13.42542 -13.36277 -13.20336 -13.00171 -12.72693 -12.66053 -12.55134 -12.31833 -12.27013 -12.13870 -12.05520 -11.94322 -11.76814 -11.70041 -11.56369 -11.33492 -10.96433 -10.71057 -10.44055 -10.33766 -9.88423 -8.32755 -6.47806 -0.57292 1.33335 1.35731 1.47529 1.92939 2.34236 2.78788 2.93911 3.00830 3.16329 3.40631 3.49204 3.78120 3.83969 3.96217 4.04631 4.12174 4.22969 4.31130 4.33586 4.35252 4.39858 4.45341 4.56770 4.58996 4.60747 4.71207 4.78313 4.79426 4.84414 4.88002 4.91714 4.94136 5.00483 5.16138 5.18194 5.19641 5.33535 5.44252 5.51043 5.60994 5.76740 6.17169 6.33897 6.63825 7.26595 8.83887 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.022256 B = 0.004664 C = 0.004315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.767530 B = 6001.855099 C = 6487.628535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.411 6.411 3 C 0.095 3.905 4 H 0.093 0.907 5 C -0.153 4.153 6 C 0.111 3.889 7 N -1.005 6.005 8 S 2.615 3.385 9 O -1.000 7.000 10 O -0.983 6.983 11 C -0.575 4.575 12 C -0.033 4.033 13 C -0.521 4.521 14 H 0.024 0.976 15 C 0.032 3.968 16 N -0.939 5.939 17 Si 0.932 3.068 18 H -0.256 1.256 19 H -0.294 1.294 20 H -0.218 1.218 21 C -0.171 4.171 22 C -0.170 4.170 23 C 0.158 3.842 24 H 0.119 0.881 25 C -0.193 4.193 26 C -0.124 4.124 27 H 0.091 0.909 28 H 0.050 0.950 29 H 0.056 0.944 30 H 0.045 0.955 31 H 0.099 0.901 32 H 0.088 0.912 33 H 0.108 0.892 34 H 0.136 0.864 35 H 0.156 0.844 36 H 0.269 0.731 37 H 0.114 0.886 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.119 0.881 41 H 0.102 0.898 42 H 0.043 0.957 43 H 0.065 0.935 44 H 0.099 0.901 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.047 -0.488 -5.566 24.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.330 6.330 3 C 0.037 3.963 4 H 0.111 0.889 5 C -0.192 4.192 6 C -0.013 4.013 7 N -0.845 5.845 8 S 2.715 3.285 9 O -0.991 6.991 10 O -0.973 6.973 11 C -0.707 4.707 12 C -0.035 4.035 13 C -0.558 4.558 14 H 0.042 0.958 15 C -0.168 4.168 16 N -0.576 5.576 17 Si 0.754 3.246 18 H -0.181 1.181 19 H -0.221 1.221 20 H -0.141 1.141 21 C -0.208 4.208 22 C -0.208 4.208 23 C 0.053 3.947 24 H 0.136 0.864 25 C -0.251 4.251 26 C -0.164 4.164 27 H 0.109 0.891 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.117 0.883 32 H 0.106 0.894 33 H 0.126 0.874 34 H 0.153 0.847 35 H 0.174 0.826 36 H 0.078 0.922 37 H 0.132 0.868 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.137 0.863 41 H 0.121 0.879 42 H 0.062 0.938 43 H 0.084 0.916 44 H 0.117 0.883 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -23.251 -1.189 -4.986 23.810 hybrid contribution 0.781 0.445 -0.514 1.035 sum -22.471 -0.744 -5.499 23.146 Atomic orbital electron populations 1.22981 0.79569 1.03603 1.01078 1.87912 1.21467 1.28492 1.95166 1.22088 0.94534 0.84773 0.94895 0.88944 1.22392 1.02139 0.96437 0.98275 1.21669 0.85645 0.97810 0.96222 1.57986 1.25619 1.77512 1.23356 1.04600 0.72593 0.77537 0.73769 1.93401 1.84661 1.88038 1.32970 1.93583 1.61196 1.59983 1.82490 1.30308 1.06416 1.20856 1.13122 1.18753 0.92264 0.90500 1.01988 1.20429 1.03884 1.28784 1.02687 0.95773 1.25932 0.93721 0.95411 1.01703 1.70065 1.11744 1.43542 1.32275 0.86033 0.81696 0.79357 0.77486 1.18086 1.22131 1.14061 1.23070 1.02228 1.04077 0.91397 1.23098 1.02430 0.95132 1.00148 1.21140 0.97198 0.95347 0.80998 0.86378 1.22710 0.95385 1.03380 1.03605 1.22019 0.95746 0.96300 1.02297 0.89080 0.93090 0.92568 0.93563 0.88250 0.89411 0.87367 0.84650 0.82610 0.92249 0.86831 0.90404 0.90258 0.86310 0.87896 0.93772 0.91642 0.88253 0.93317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 10.82 113.37 1.23 1.52 16 2 O -0.41 -8.56 10.35 -148.98 -1.54 -10.10 16 3 C 0.09 1.79 2.57 30.62 0.08 1.87 16 4 H 0.09 1.20 7.79 -2.39 -0.02 1.18 16 5 C -0.15 -3.19 5.69 30.67 0.17 -3.01 16 6 C 0.11 2.45 6.48 86.36 0.56 3.01 16 7 N -1.00 -28.59 3.20 -490.77 -1.57 -30.16 16 8 S 2.62 106.31 4.33 -56.49 -0.24 106.06 16 9 O -1.00 -44.91 16.25 -127.65 -2.07 -46.98 16 10 O -0.98 -49.55 13.49 -127.65 -1.72 -51.27 16 11 C -0.58 -20.83 5.62 71.98 0.40 -20.42 16 12 C -0.03 -1.45 0.95 -52.93 -0.05 -1.50 16 13 C -0.52 -30.22 8.18 25.60 0.21 -30.01 16 14 H 0.02 1.63 8.06 -2.91 -0.02 1.61 16 15 C 0.03 1.87 5.47 84.65 0.46 2.33 16 16 N -0.94 -60.06 13.96 21.45 0.30 -59.76 16 17 Si 0.93 42.12 24.98 68.60 1.71 43.83 16 18 H -0.26 -10.85 7.00 99.48 0.70 -10.15 16 19 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 20 H -0.22 -8.29 5.59 99.48 0.56 -7.73 16 21 C -0.17 -6.64 9.93 30.62 0.30 -6.33 16 22 C -0.17 -6.36 7.67 30.62 0.23 -6.12 16 23 C 0.16 3.75 3.50 44.97 0.16 3.91 16 24 H 0.12 1.81 8.14 -2.38 -0.02 1.79 16 25 C -0.19 -5.84 7.73 71.98 0.56 -5.28 16 26 C -0.12 -2.81 4.99 30.67 0.15 -2.66 16 27 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.05 0.53 7.84 -2.39 -0.02 0.51 16 29 H 0.06 0.53 8.08 -2.38 -0.02 0.51 16 30 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 31 H 0.10 1.52 7.84 -2.39 -0.02 1.51 16 32 H 0.09 2.23 6.55 -2.38 -0.02 2.21 16 33 H 0.11 1.47 8.14 -2.38 -0.02 1.45 16 34 H 0.14 4.68 4.35 -2.39 -0.01 4.67 16 35 H 0.16 4.00 8.09 -2.39 -0.02 3.98 16 36 H 0.27 15.96 8.31 -92.71 -0.77 15.19 16 37 H 0.11 3.60 8.14 -2.39 -0.02 3.58 16 38 H 0.08 3.24 8.14 -2.39 -0.02 3.22 16 39 H 0.08 3.20 7.20 -2.39 -0.02 3.18 16 40 H 0.12 3.45 8.14 -2.39 -0.02 3.43 16 41 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 42 H 0.04 1.53 3.92 -2.38 -0.01 1.52 16 43 H 0.06 2.41 6.74 -2.39 -0.02 2.40 16 44 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.05 1.41 8.06 -2.39 -0.02 1.39 16 Total: -1.00 -82.20 351.98 0.14 -82.06 By element: Atomic # 1 Polarization: 28.21 SS G_CDS: 0.81 Total: 29.02 kcal Atomic # 6 Polarization: -67.17 SS G_CDS: 4.47 Total: -62.70 kcal Atomic # 7 Polarization: -88.65 SS G_CDS: -1.27 Total: -89.92 kcal Atomic # 8 Polarization: -103.02 SS G_CDS: -5.34 Total: -108.36 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 1.71 Total: 43.83 kcal Atomic # 16 Polarization: 106.31 SS G_CDS: -0.24 Total: 106.06 kcal Total: -82.20 0.14 -82.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364852857.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.064 kcal (2) G-P(sol) polarization free energy of solvation -82.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds