Wall clock time and date at job start Tue Mar 31 2020 12:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42897 * 113.99607 * 2 1 4 4 H 1.08999 * 109.46479 * 30.03232 * 3 2 1 5 5 C 1.53045 * 109.45183 * 270.06784 * 3 2 1 6 6 C 1.53619 * 109.24377 * 178.50201 * 5 3 2 7 7 N 1.46929 * 108.54659 * 54.85076 * 6 5 3 8 8 S 1.65598 * 120.62819 * 126.36861 * 7 6 5 9 9 O 1.42101 * 104.27994 * 349.03475 * 8 7 6 10 10 O 1.42105 * 104.27777 * 221.17932 * 8 7 6 11 11 C 1.81398 * 104.45044 * 105.10888 * 8 7 6 12 12 C 1.53001 * 109.47370 * 173.64136 * 11 8 7 13 13 C 1.50699 * 115.54870 * 56.74928 * 12 11 8 14 14 H 1.07994 * 120.00378 * 264.85665 * 13 12 11 15 15 C 1.37878 * 119.99847 * 84.86166 * 13 12 11 16 16 N 1.31519 * 119.99878 * 184.36776 * 15 13 12 17 17 Si 1.86803 * 120.00189 * 4.35956 * 15 13 12 18 18 H 1.48508 * 109.46733 * 94.17600 * 17 15 13 19 19 H 1.48495 * 109.47286 * 214.17684 * 17 15 13 20 20 H 1.48493 * 109.47111 * 334.17865 * 17 15 13 21 21 C 1.52996 * 117.49726 * 271.07821 * 12 11 8 22 22 C 1.52997 * 117.49512 * 202.41943 * 12 11 8 23 23 C 1.46921 * 118.73774 * 306.09859 * 7 6 5 24 24 H 1.09001 * 109.58711 * 293.92763 * 23 7 6 25 25 C 1.53008 * 109.58488 * 173.64449 * 23 7 6 26 26 C 1.53039 * 109.45950 * 150.00797 * 3 2 1 27 27 H 1.09006 * 109.46664 * 299.99259 * 1 2 3 28 28 H 1.08995 * 109.47728 * 59.99477 * 1 2 3 29 29 H 1.09005 * 109.47090 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.49513 * 298.57143 * 5 3 2 31 31 H 1.08996 * 109.50001 * 58.66838 * 5 3 2 32 32 H 1.08999 * 109.73841 * 295.11841 * 6 5 3 33 33 H 1.09003 * 109.66795 * 174.54920 * 6 5 3 34 34 H 1.09005 * 109.46694 * 293.63817 * 11 8 7 35 35 H 1.08996 * 109.47503 * 53.63688 * 11 8 7 36 36 H 0.96998 * 119.99998 * 179.97438 * 16 15 13 37 37 H 1.08999 * 117.50023 * 0.02562 * 21 12 11 38 38 H 1.08997 * 117.49765 * 145.01625 * 21 12 11 39 39 H 1.09002 * 117.49894 * 214.97264 * 22 12 11 40 40 H 1.08996 * 117.50229 * 359.97438 * 22 12 11 41 41 H 1.08999 * 109.46796 * 44.97493 * 25 23 7 42 42 H 1.08999 * 109.46800 * 164.97275 * 25 23 7 43 43 H 1.09000 * 109.46852 * 284.97413 * 25 23 7 44 44 H 1.08998 * 109.49979 * 61.41697 * 26 3 2 45 45 H 1.09003 * 109.49324 * 301.31936 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9991 0.5143 5 6 2.2159 1.7718 -1.4431 6 6 2.8058 3.1902 -1.4376 7 7 4.0302 3.1840 -0.6255 8 16 5.4569 3.7512 -1.2459 9 8 5.1964 3.9121 -2.6335 10 8 6.4318 2.8252 -0.7860 11 6 5.6867 5.3650 -0.4500 12 6 7.0598 5.9271 -0.8236 13 6 7.3232 6.0714 -2.3004 14 1 7.8414 5.2895 -2.8355 15 6 6.9025 7.2018 -2.9685 16 7 7.0552 7.2905 -4.2717 17 14 6.1154 8.6072 -2.0225 18 1 7.1530 9.6101 -1.6719 19 1 5.0724 9.2473 -2.8637 20 1 5.4952 8.0814 -0.7799 21 6 8.2431 5.5546 0.0719 22 6 7.6720 6.9743 0.1088 23 6 3.9632 2.6705 0.7495 24 1 3.3378 3.3268 1.3546 25 6 5.3717 2.6124 1.3444 26 6 3.3592 1.2630 0.7213 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 2.9005 1.0924 -1.9508 31 1 1.2579 1.7794 -1.9630 32 1 2.0858 3.8866 -1.0078 33 1 3.0452 3.4919 -2.4574 34 1 4.9094 6.0506 -0.7877 35 1 5.6238 5.2489 0.6319 36 1 6.7589 8.0855 -4.7418 37 1 8.0434 4.9088 0.9270 38 1 9.2121 5.4142 -0.4070 39 1 8.2656 7.7674 -0.3458 40 1 7.0963 7.2632 0.9881 41 1 5.9020 3.5363 1.1134 42 1 5.3047 2.4925 2.4257 43 1 5.9117 1.7671 0.9178 44 1 4.0331 0.5884 0.1932 45 1 3.2150 0.9086 1.7420 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364852859.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:47 Heat of formation + Delta-G solvation = -80.414253 kcal Electronic energy + Delta-G solvation = -26822.997136 eV Core-core repulsion = 23162.201249 eV Total energy + Delta-G solvation = -3660.795887 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.42093 -37.24945 -37.11680 -36.43508 -35.06663 -32.47452 -32.18307 -31.52996 -28.56220 -27.48584 -26.50646 -25.54628 -23.71570 -22.13436 -21.75989 -20.66302 -19.35198 -18.27790 -16.96335 -16.70750 -16.51718 -16.16728 -15.42299 -15.38079 -15.18496 -15.03597 -14.45521 -14.23198 -13.88440 -13.44961 -13.29473 -13.07417 -12.85074 -12.59212 -12.49182 -12.37180 -12.30808 -11.81762 -11.57056 -11.32072 -11.26041 -11.14082 -11.04141 -11.00582 -10.92544 -10.66127 -10.63669 -10.42763 -10.18186 -10.08150 -9.67020 -9.65606 -9.20059 -8.92991 -8.68354 -8.41433 -6.17642 -4.26955 0.94479 3.20730 3.22474 3.31034 3.33973 3.54772 4.33853 4.48526 4.55793 4.65111 4.75481 4.83345 4.86836 4.97567 5.06461 5.10983 5.13470 5.13870 5.23866 5.25140 5.31784 5.41577 5.44925 5.62744 5.67742 5.69248 5.79252 5.83452 5.88708 5.97564 6.01184 6.08311 6.16931 6.21196 6.28543 6.39682 6.52015 6.62479 6.81966 6.86747 7.03353 7.03424 7.57607 8.35178 8.86168 9.43160 10.93625 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021776 B = 0.004567 C = 0.004222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.537400 B = 6128.891128 C = 6629.704883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.386 6.386 3 C 0.091 3.909 4 H 0.061 0.939 5 C -0.152 4.152 6 C 0.117 3.883 7 N -1.011 6.011 8 S 2.618 3.382 9 O -0.936 6.936 10 O -0.961 6.961 11 C -0.580 4.580 12 C 0.005 3.995 13 C -0.518 4.518 14 H 0.086 0.914 15 C 0.092 3.908 16 N -0.877 5.877 17 Si 0.871 3.129 18 H -0.276 1.276 19 H -0.290 1.290 20 H -0.254 1.254 21 C -0.175 4.175 22 C -0.186 4.186 23 C 0.156 3.844 24 H 0.072 0.928 25 C -0.183 4.183 26 C -0.122 4.122 27 H 0.039 0.961 28 H 0.041 0.959 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.107 0.893 34 H 0.122 0.878 35 H 0.106 0.894 36 H 0.267 0.733 37 H 0.079 0.921 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.074 0.926 41 H 0.062 0.938 42 H 0.069 0.931 43 H 0.098 0.902 44 H 0.081 0.919 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.570 -8.798 12.420 19.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.305 6.305 3 C 0.033 3.967 4 H 0.079 0.921 5 C -0.192 4.192 6 C -0.009 4.009 7 N -0.848 5.848 8 S 2.716 3.284 9 O -0.926 6.926 10 O -0.951 6.951 11 C -0.711 4.711 12 C 0.002 3.998 13 C -0.555 4.555 14 H 0.104 0.896 15 C -0.113 4.113 16 N -0.512 5.512 17 Si 0.698 3.302 18 H -0.201 1.201 19 H -0.216 1.216 20 H -0.178 1.178 21 C -0.212 4.212 22 C -0.225 4.225 23 C 0.050 3.950 24 H 0.090 0.910 25 C -0.240 4.240 26 C -0.161 4.161 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.102 0.898 30 H 0.097 0.903 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.125 0.875 34 H 0.140 0.860 35 H 0.124 0.876 36 H 0.077 0.923 37 H 0.097 0.903 38 H 0.113 0.887 39 H 0.109 0.891 40 H 0.093 0.907 41 H 0.080 0.920 42 H 0.088 0.912 43 H 0.116 0.884 44 H 0.099 0.901 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.965 -9.314 11.586 19.083 hybrid contribution -1.021 1.728 0.860 2.184 sum -12.987 -7.586 12.446 19.522 Atomic orbital electron populations 1.22767 0.81420 1.02521 0.99861 1.87925 1.19355 1.28097 1.95079 1.22112 0.94734 0.84170 0.95638 0.92125 1.22452 1.01828 0.97610 0.97281 1.21483 0.86031 0.96115 0.97250 1.58367 1.26523 1.77838 1.22068 1.04939 0.72385 0.76621 0.74488 1.93555 1.83038 1.86899 1.29114 1.93549 1.59520 1.59669 1.82359 1.30409 1.08028 1.22153 1.10471 1.18815 0.86352 1.00375 0.94230 1.20347 1.40162 1.06764 0.88193 0.89600 1.24943 0.93916 0.98041 0.94422 1.69901 1.45299 1.28576 1.07377 0.86973 0.79785 0.82782 0.80702 1.20138 1.21643 1.17789 1.22984 0.99395 0.97217 1.01578 1.22985 1.05058 0.93046 1.01390 1.20883 0.97854 0.94035 0.82233 0.91035 1.22671 0.94546 1.05458 1.01359 1.22010 0.95581 0.97406 1.01142 0.94224 0.94049 0.89839 0.90350 0.90856 0.91741 0.87506 0.85992 0.87567 0.92259 0.90273 0.88721 0.89073 0.90718 0.91954 0.91226 0.88353 0.90068 0.90394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.82 101.05 1.09 1.34 16 2 O -0.39 -4.42 10.35 -35.23 -0.36 -4.78 16 3 C 0.09 1.00 2.57 -26.69 -0.07 0.93 16 4 H 0.06 0.57 7.79 -51.93 -0.40 0.17 16 5 C -0.15 -1.81 5.71 -26.39 -0.15 -1.96 16 6 C 0.12 1.56 6.51 -3.49 -0.02 1.54 16 7 N -1.01 -15.32 3.20 -106.23 -0.34 -15.66 16 8 S 2.62 52.62 4.39 -107.50 -0.47 52.15 16 9 O -0.94 -22.77 15.67 -57.54 -0.90 -23.67 16 10 O -0.96 -20.28 13.98 -57.54 -0.80 -21.08 16 11 C -0.58 -11.35 5.39 37.16 0.20 -11.15 16 12 C 0.00 0.11 0.87 -155.66 -0.13 -0.02 16 13 C -0.52 -14.46 8.29 -34.44 -0.29 -14.75 16 14 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 15 C 0.09 2.63 5.47 -17.82 -0.10 2.54 16 16 N -0.88 -26.66 13.96 55.43 0.77 -25.89 16 17 Si 0.87 20.92 24.98 -169.99 -4.25 16.67 16 18 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.25 -5.59 5.53 56.52 0.31 -5.27 16 21 C -0.17 -3.52 9.93 -26.70 -0.27 -3.78 16 22 C -0.19 -3.81 7.37 -26.70 -0.20 -4.01 16 23 C 0.16 1.92 3.50 -67.60 -0.24 1.68 16 24 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 25 C -0.18 -2.36 7.71 37.16 0.29 -2.07 16 26 C -0.12 -1.40 4.99 -26.61 -0.13 -1.53 16 27 H 0.04 0.27 8.09 -51.93 -0.42 -0.15 16 28 H 0.04 0.30 7.84 -51.93 -0.41 -0.11 16 29 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 31 H 0.07 0.73 7.84 -51.93 -0.41 0.32 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.11 1.61 6.57 -51.93 -0.34 1.27 16 34 H 0.12 2.36 6.77 -51.92 -0.35 2.01 16 35 H 0.11 1.67 6.49 -51.93 -0.34 1.33 16 36 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 37 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 38 H 0.09 1.93 8.14 -51.93 -0.42 1.50 16 39 H 0.09 1.93 7.15 -51.93 -0.37 1.56 16 40 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 41 H 0.06 0.88 4.10 -51.93 -0.21 0.67 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.10 1.44 6.71 -51.93 -0.35 1.09 16 44 H 0.08 1.06 8.06 -51.93 -0.42 0.64 16 45 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 352.44 15.07 5.31 5.31 Total: -1.00 -34.03 352.44 -8.53 -42.56 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -7.47 Total: 5.64 kcal Atomic # 6 Polarization: -31.24 SS G_CDS: -0.01 Total: -31.25 kcal Atomic # 7 Polarization: -41.98 SS G_CDS: 0.43 Total: -41.55 kcal Atomic # 8 Polarization: -47.46 SS G_CDS: -2.07 Total: -49.53 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.25 Total: 16.67 kcal Atomic # 16 Polarization: 52.62 SS G_CDS: -0.47 Total: 52.15 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.03 -8.53 -42.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364852859.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.857 kcal (2) G-P(sol) polarization free energy of solvation -34.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds