Wall clock time and date at job start Tue Mar 31 2020 12:55:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42903 * 1
3 3 C 1.42897 * 113.99607 * 2 1
4 4 H 1.08999 * 109.46479 * 30.03232 * 3 2 1
5 5 C 1.53045 * 109.45183 * 270.06784 * 3 2 1
6 6 C 1.53619 * 109.24377 * 178.50201 * 5 3 2
7 7 N 1.46929 * 108.54659 * 54.85076 * 6 5 3
8 8 S 1.65598 * 120.62819 * 126.36861 * 7 6 5
9 9 O 1.42101 * 104.27994 * 349.03475 * 8 7 6
10 10 O 1.42105 * 104.27777 * 221.17932 * 8 7 6
11 11 C 1.81398 * 104.45044 * 105.10888 * 8 7 6
12 12 C 1.53001 * 109.47370 * 173.64136 * 11 8 7
13 13 C 1.50699 * 115.54870 * 56.74928 * 12 11 8
14 14 H 1.07994 * 120.00378 * 264.85665 * 13 12 11
15 15 C 1.37878 * 119.99847 * 84.86166 * 13 12 11
16 16 N 1.31519 * 119.99878 * 184.36776 * 15 13 12
17 17 Si 1.86803 * 120.00189 * 4.35956 * 15 13 12
18 18 H 1.48508 * 109.46733 * 94.17600 * 17 15 13
19 19 H 1.48495 * 109.47286 * 214.17684 * 17 15 13
20 20 H 1.48493 * 109.47111 * 334.17865 * 17 15 13
21 21 C 1.52996 * 117.49726 * 271.07821 * 12 11 8
22 22 C 1.52997 * 117.49512 * 202.41943 * 12 11 8
23 23 C 1.46921 * 118.73774 * 306.09859 * 7 6 5
24 24 H 1.09001 * 109.58711 * 293.92763 * 23 7 6
25 25 C 1.53008 * 109.58488 * 173.64449 * 23 7 6
26 26 C 1.53039 * 109.45950 * 150.00797 * 3 2 1
27 27 H 1.09006 * 109.46664 * 299.99259 * 1 2 3
28 28 H 1.08995 * 109.47728 * 59.99477 * 1 2 3
29 29 H 1.09005 * 109.47090 * 180.02562 * 1 2 3
30 30 H 1.09003 * 109.49513 * 298.57143 * 5 3 2
31 31 H 1.08996 * 109.50001 * 58.66838 * 5 3 2
32 32 H 1.08999 * 109.73841 * 295.11841 * 6 5 3
33 33 H 1.09003 * 109.66795 * 174.54920 * 6 5 3
34 34 H 1.09005 * 109.46694 * 293.63817 * 11 8 7
35 35 H 1.08996 * 109.47503 * 53.63688 * 11 8 7
36 36 H 0.96998 * 119.99998 * 179.97438 * 16 15 13
37 37 H 1.08999 * 117.50023 * 0.02562 * 21 12 11
38 38 H 1.08997 * 117.49765 * 145.01625 * 21 12 11
39 39 H 1.09002 * 117.49894 * 214.97264 * 22 12 11
40 40 H 1.08996 * 117.50229 * 359.97438 * 22 12 11
41 41 H 1.08999 * 109.46796 * 44.97493 * 25 23 7
42 42 H 1.08999 * 109.46800 * 164.97275 * 25 23 7
43 43 H 1.09000 * 109.46852 * 284.97413 * 25 23 7
44 44 H 1.08998 * 109.49979 * 61.41697 * 26 3 2
45 45 H 1.09003 * 109.49324 * 301.31936 * 26 3 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3055 0.0000
4 1 1.3450 1.9991 0.5143
5 6 2.2159 1.7718 -1.4431
6 6 2.8058 3.1902 -1.4376
7 7 4.0302 3.1840 -0.6255
8 16 5.4569 3.7512 -1.2459
9 8 5.1964 3.9121 -2.6335
10 8 6.4318 2.8252 -0.7860
11 6 5.6867 5.3650 -0.4500
12 6 7.0598 5.9271 -0.8236
13 6 7.3232 6.0714 -2.3004
14 1 7.8414 5.2895 -2.8355
15 6 6.9025 7.2018 -2.9685
16 7 7.0552 7.2905 -4.2717
17 14 6.1154 8.6072 -2.0225
18 1 7.1530 9.6101 -1.6719
19 1 5.0724 9.2473 -2.8637
20 1 5.4952 8.0814 -0.7799
21 6 8.2431 5.5546 0.0719
22 6 7.6720 6.9743 0.1088
23 6 3.9632 2.6705 0.7495
24 1 3.3378 3.3268 1.3546
25 6 5.3717 2.6124 1.3444
26 6 3.3592 1.2630 0.7213
27 1 -0.3633 0.5138 0.8901
28 1 -0.3634 0.5139 -0.8899
29 1 -0.3633 -1.0277 0.0005
30 1 2.9005 1.0924 -1.9508
31 1 1.2579 1.7794 -1.9630
32 1 2.0858 3.8866 -1.0078
33 1 3.0452 3.4919 -2.4574
34 1 4.9094 6.0506 -0.7877
35 1 5.6238 5.2489 0.6319
36 1 6.7589 8.0855 -4.7418
37 1 8.0434 4.9088 0.9270
38 1 9.2121 5.4142 -0.4070
39 1 8.2656 7.7674 -0.3458
40 1 7.0963 7.2632 0.9881
41 1 5.9020 3.5363 1.1134
42 1 5.3047 2.4925 2.4257
43 1 5.9117 1.7671 0.9178
44 1 4.0331 0.5884 0.1932
45 1 3.2150 0.9086 1.7420
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001364852859.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:55:46
Heat of formation + Delta-G solvation = -106.371454 kcal
Electronic energy + Delta-G solvation = -26824.122724 eV
Core-core repulsion = 23162.201249 eV
Total energy + Delta-G solvation = -3661.921476 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 317.149 amu
Computer time = 0.76 seconds
Orbital eigenvalues (eV)
-40.32826 -38.88383 -38.30173 -37.83282 -36.71519 -34.31658 -33.47546 -32.50776
-30.11448 -28.40117 -27.68610 -27.15334 -24.71936 -23.37165 -23.11639 -21.65477
-21.13676 -19.73185 -18.60880 -18.15111 -17.45481 -17.39751 -17.08449 -16.65465
-16.23848 -16.03955 -15.84452 -15.50667 -15.28965 -14.87136 -14.68585 -14.35995
-14.11721 -14.00464 -13.93697 -13.38873 -13.35864 -13.20074 -13.01568 -12.75442
-12.66173 -12.57682 -12.34250 -12.24930 -12.15447 -12.05776 -11.93995 -11.75086
-11.61172 -11.56263 -11.30372 -11.03994 -10.66261 -10.45095 -10.33930 -9.87475
-8.33147 -6.48146 -0.57155 1.34550 1.35003 1.49649 1.92222 2.34479
2.78611 2.98172 3.00230 3.15187 3.39975 3.50405 3.80000 3.82555
3.97308 4.02248 4.15104 4.23968 4.28437 4.32210 4.36591 4.40163
4.46349 4.57913 4.58496 4.60614 4.72166 4.79052 4.82102 4.85933
4.90637 4.92344 4.93725 5.02966 5.15787 5.17706 5.20354 5.33180
5.45480 5.53017 5.61346 5.77644 6.17313 6.32404 6.63802 7.25911
8.83399
Molecular weight = 317.15amu
Principal moments of inertia in cm(-1)
A = 0.021776 B = 0.004567 C = 0.004222
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1285.537400 B = 6128.891128 C = 6629.704883
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.023 3.977
2 O -0.409 6.409
3 C 0.094 3.906
4 H 0.090 0.910
5 C -0.151 4.151
6 C 0.110 3.890
7 N -1.005 6.005
8 S 2.614 3.386
9 O -0.998 6.998
10 O -0.985 6.985
11 C -0.571 4.571
12 C -0.032 4.032
13 C -0.521 4.521
14 H 0.024 0.976
15 C 0.027 3.973
16 N -0.939 5.939
17 Si 0.932 3.068
18 H -0.264 1.264
19 H -0.293 1.293
20 H -0.209 1.209
21 C -0.169 4.169
22 C -0.168 4.168
23 C 0.151 3.849
24 H 0.115 0.885
25 C -0.188 4.188
26 C -0.122 4.122
27 H 0.057 0.943
28 H 0.047 0.953
29 H 0.092 0.908
30 H 0.047 0.953
31 H 0.093 0.907
32 H 0.104 0.896
33 H 0.077 0.923
34 H 0.129 0.871
35 H 0.158 0.842
36 H 0.268 0.732
37 H 0.115 0.885
38 H 0.077 0.923
39 H 0.079 0.921
40 H 0.119 0.881
41 H 0.051 0.949
42 H 0.108 0.892
43 H 0.069 0.931
44 H 0.051 0.949
45 H 0.104 0.896
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.423 -7.678 17.361 24.458
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.072 4.072
2 O -0.328 6.328
3 C 0.036 3.964
4 H 0.108 0.892
5 C -0.191 4.191
6 C -0.015 4.015
7 N -0.844 5.844
8 S 2.714 3.286
9 O -0.988 6.988
10 O -0.975 6.975
11 C -0.703 4.703
12 C -0.035 4.035
13 C -0.558 4.558
14 H 0.042 0.958
15 C -0.172 4.172
16 N -0.577 5.577
17 Si 0.754 3.246
18 H -0.190 1.190
19 H -0.220 1.220
20 H -0.131 1.131
21 C -0.206 4.206
22 C -0.207 4.207
23 C 0.046 3.954
24 H 0.133 0.867
25 C -0.246 4.246
26 C -0.161 4.161
27 H 0.075 0.925
28 H 0.065 0.935
29 H 0.111 0.889
30 H 0.066 0.934
31 H 0.112 0.888
32 H 0.122 0.878
33 H 0.096 0.904
34 H 0.147 0.853
35 H 0.175 0.825
36 H 0.077 0.923
37 H 0.133 0.867
38 H 0.096 0.904
39 H 0.098 0.902
40 H 0.137 0.863
41 H 0.069 0.931
42 H 0.127 0.873
43 H 0.088 0.912
44 H 0.070 0.930
45 H 0.122 0.878
Dipole moment (debyes) X Y Z Total
from point charges -14.805 -8.237 16.543 23.680
hybrid contribution -0.086 1.198 -0.713 1.397
sum -14.892 -7.039 15.830 22.845
Atomic orbital electron populations
1.22978 0.79673 1.03628 1.00970 1.87904 1.21358 1.28408 1.95138
1.22102 0.95024 0.84732 0.94532 0.89190 1.22449 1.01887 0.96062
0.98682 1.21683 0.85898 0.97877 0.96043 1.57984 1.25279 1.77542
1.23643 1.04642 0.73181 0.77195 0.73568 1.93483 1.84209 1.87781
1.33314 1.93526 1.61226 1.60472 1.82269 1.30242 1.05769 1.20747
1.13510 1.18734 0.89100 1.04119 0.91543 1.20465 1.38943 1.04965
0.91428 0.95817 1.25997 0.94682 1.01341 0.95225 1.70085 1.47912
1.29807 1.09875 0.85994 0.79083 0.78756 0.80759 1.18951 1.22022
1.13084 1.23081 0.97636 0.98307 1.01584 1.23100 1.04001 0.92293
1.01272 1.21274 0.98338 0.95156 0.80593 0.86698 1.22694 0.94481
1.03634 1.03762 1.22014 0.95341 0.96451 1.02339 0.92490 0.93463
0.88931 0.93378 0.88844 0.87844 0.90412 0.85312 0.82467 0.92260
0.86721 0.90391 0.90230 0.86337 0.93072 0.87339 0.91171 0.92991
0.87807
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.30 10.82 113.37 1.23 1.53 16
2 O -0.41 -8.40 10.35 -148.98 -1.54 -9.94 16
3 C 0.09 1.77 2.57 30.62 0.08 1.85 16
4 H 0.09 1.21 7.79 -2.39 -0.02 1.19 16
5 C -0.15 -3.43 5.71 30.82 0.18 -3.26 16
6 C 0.11 2.80 6.51 86.51 0.56 3.36 16
7 N -1.00 -28.83 3.20 -489.99 -1.57 -30.40 16
8 S 2.61 106.21 4.39 -56.49 -0.25 105.96 16
9 O -1.00 -51.81 15.67 -127.65 -2.00 -53.81 16
10 O -0.98 -42.74 13.98 -127.65 -1.79 -44.52 16
11 C -0.57 -20.67 5.39 71.98 0.39 -20.28 16
12 C -0.03 -1.44 0.87 -52.93 -0.05 -1.49 16
13 C -0.52 -30.35 8.29 25.60 0.21 -30.14 16
14 H 0.02 1.61 8.06 -2.91 -0.02 1.58 16
15 C 0.03 1.59 5.47 84.65 0.46 2.05 16
16 N -0.94 -60.51 13.96 21.45 0.30 -60.21 16
17 Si 0.93 42.22 24.98 68.60 1.71 43.94 16
18 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16
19 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16
20 H -0.21 -7.90 5.53 99.48 0.55 -7.35 16
21 C -0.17 -6.46 9.93 30.62 0.30 -6.15 16
22 C -0.17 -6.21 7.37 30.62 0.23 -5.98 16
23 C 0.15 3.15 3.50 44.98 0.16 3.31 16
24 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16
25 C -0.19 -4.25 7.71 71.98 0.56 -3.70 16
26 C -0.12 -2.47 4.99 30.67 0.15 -2.32 16
27 H 0.06 0.55 8.09 -2.38 -0.02 0.53 16
28 H 0.05 0.55 7.84 -2.39 -0.02 0.53 16
29 H 0.09 1.00 8.14 -2.38 -0.02 0.98 16
30 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16
31 H 0.09 1.70 7.84 -2.39 -0.02 1.68 16
32 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16
33 H 0.08 2.44 6.57 -2.39 -0.02 2.43 16
34 H 0.13 4.50 6.77 -2.39 -0.02 4.48 16
35 H 0.16 4.02 6.49 -2.39 -0.02 4.01 16
36 H 0.27 16.02 8.31 -92.71 -0.77 15.25 16
37 H 0.11 3.55 8.14 -2.39 -0.02 3.53 16
38 H 0.08 3.19 8.14 -2.39 -0.02 3.17 16
39 H 0.08 3.13 7.15 -2.39 -0.02 3.12 16
40 H 0.12 3.39 8.14 -2.39 -0.02 3.37 16
41 H 0.05 1.26 4.10 -2.39 -0.01 1.25 16
42 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16
43 H 0.07 1.99 6.71 -2.39 -0.02 1.98 16
44 H 0.05 1.34 8.06 -2.39 -0.02 1.32 16
45 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16
Total: -1.00 -82.90 352.44 0.14 -82.76
By element:
Atomic # 1 Polarization: 26.61 SS G_CDS: 0.81 Total: 27.42 kcal
Atomic # 6 Polarization: -65.67 SS G_CDS: 4.46 Total: -61.21 kcal
Atomic # 7 Polarization: -89.33 SS G_CDS: -1.27 Total: -90.60 kcal
Atomic # 8 Polarization: -102.94 SS G_CDS: -5.33 Total: -108.27 kcal
Atomic # 14 Polarization: 42.22 SS G_CDS: 1.71 Total: 43.94 kcal
Atomic # 16 Polarization: 106.21 SS G_CDS: -0.25 Total: 105.96 kcal
Total: -82.90 0.14 -82.76 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001364852859.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -23.607 kcal
(2) G-P(sol) polarization free energy of solvation -82.903 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.510 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.139 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.765 kcal
(6) G-S(sol) free energy of system = (1) + (5) -106.371 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.76 seconds