Wall clock time and date at job start Tue Mar 31 2020 12:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42897 * 113.99607 * 2 1 4 4 H 1.08999 * 109.46479 * 30.03232 * 3 2 1 5 5 C 1.53045 * 109.45183 * 270.06784 * 3 2 1 6 6 C 1.53619 * 109.24377 * 178.50201 * 5 3 2 7 7 N 1.46929 * 108.54659 * 54.85076 * 6 5 3 8 8 S 1.65598 * 120.62819 * 126.36861 * 7 6 5 9 9 O 1.42101 * 104.27994 * 349.03475 * 8 7 6 10 10 O 1.42105 * 104.27777 * 221.17932 * 8 7 6 11 11 C 1.81398 * 104.45044 * 105.10888 * 8 7 6 12 12 C 1.53001 * 109.47370 * 173.64136 * 11 8 7 13 13 C 1.50699 * 115.54870 * 56.74928 * 12 11 8 14 14 H 1.07994 * 120.00378 * 264.85665 * 13 12 11 15 15 C 1.37878 * 119.99847 * 84.86166 * 13 12 11 16 16 N 1.31519 * 119.99878 * 184.36776 * 15 13 12 17 17 Si 1.86803 * 120.00189 * 4.35956 * 15 13 12 18 18 H 1.48508 * 109.46733 * 94.17600 * 17 15 13 19 19 H 1.48495 * 109.47286 * 214.17684 * 17 15 13 20 20 H 1.48493 * 109.47111 * 334.17865 * 17 15 13 21 21 C 1.52996 * 117.49726 * 271.07821 * 12 11 8 22 22 C 1.52997 * 117.49512 * 202.41943 * 12 11 8 23 23 C 1.46921 * 118.73774 * 306.09859 * 7 6 5 24 24 H 1.09001 * 109.58711 * 293.92763 * 23 7 6 25 25 C 1.53008 * 109.58488 * 173.64449 * 23 7 6 26 26 C 1.53039 * 109.45950 * 150.00797 * 3 2 1 27 27 H 1.09006 * 109.46664 * 299.99259 * 1 2 3 28 28 H 1.08995 * 109.47728 * 59.99477 * 1 2 3 29 29 H 1.09005 * 109.47090 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.49513 * 298.57143 * 5 3 2 31 31 H 1.08996 * 109.50001 * 58.66838 * 5 3 2 32 32 H 1.08999 * 109.73841 * 295.11841 * 6 5 3 33 33 H 1.09003 * 109.66795 * 174.54920 * 6 5 3 34 34 H 1.09005 * 109.46694 * 293.63817 * 11 8 7 35 35 H 1.08996 * 109.47503 * 53.63688 * 11 8 7 36 36 H 0.96998 * 119.99998 * 179.97438 * 16 15 13 37 37 H 1.08999 * 117.50023 * 0.02562 * 21 12 11 38 38 H 1.08997 * 117.49765 * 145.01625 * 21 12 11 39 39 H 1.09002 * 117.49894 * 214.97264 * 22 12 11 40 40 H 1.08996 * 117.50229 * 359.97438 * 22 12 11 41 41 H 1.08999 * 109.46796 * 44.97493 * 25 23 7 42 42 H 1.08999 * 109.46800 * 164.97275 * 25 23 7 43 43 H 1.09000 * 109.46852 * 284.97413 * 25 23 7 44 44 H 1.08998 * 109.49979 * 61.41697 * 26 3 2 45 45 H 1.09003 * 109.49324 * 301.31936 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9991 0.5143 5 6 2.2159 1.7718 -1.4431 6 6 2.8058 3.1902 -1.4376 7 7 4.0302 3.1840 -0.6255 8 16 5.4569 3.7512 -1.2459 9 8 5.1964 3.9121 -2.6335 10 8 6.4318 2.8252 -0.7860 11 6 5.6867 5.3650 -0.4500 12 6 7.0598 5.9271 -0.8236 13 6 7.3232 6.0714 -2.3004 14 1 7.8414 5.2895 -2.8355 15 6 6.9025 7.2018 -2.9685 16 7 7.0552 7.2905 -4.2717 17 14 6.1154 8.6072 -2.0225 18 1 7.1530 9.6101 -1.6719 19 1 5.0724 9.2473 -2.8637 20 1 5.4952 8.0814 -0.7799 21 6 8.2431 5.5546 0.0719 22 6 7.6720 6.9743 0.1088 23 6 3.9632 2.6705 0.7495 24 1 3.3378 3.3268 1.3546 25 6 5.3717 2.6124 1.3444 26 6 3.3592 1.2630 0.7213 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 2.9005 1.0924 -1.9508 31 1 1.2579 1.7794 -1.9630 32 1 2.0858 3.8866 -1.0078 33 1 3.0452 3.4919 -2.4574 34 1 4.9094 6.0506 -0.7877 35 1 5.6238 5.2489 0.6319 36 1 6.7589 8.0855 -4.7418 37 1 8.0434 4.9088 0.9270 38 1 9.2121 5.4142 -0.4070 39 1 8.2656 7.7674 -0.3458 40 1 7.0963 7.2632 0.9881 41 1 5.9020 3.5363 1.1134 42 1 5.3047 2.4925 2.4257 43 1 5.9117 1.7671 0.9178 44 1 4.0331 0.5884 0.1932 45 1 3.2150 0.9086 1.7420 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364852859.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:46 Heat of formation + Delta-G solvation = -106.371454 kcal Electronic energy + Delta-G solvation = -26824.122724 eV Core-core repulsion = 23162.201249 eV Total energy + Delta-G solvation = -3661.921476 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.32826 -38.88383 -38.30173 -37.83282 -36.71519 -34.31658 -33.47546 -32.50776 -30.11448 -28.40117 -27.68610 -27.15334 -24.71936 -23.37165 -23.11639 -21.65477 -21.13676 -19.73185 -18.60880 -18.15111 -17.45481 -17.39751 -17.08449 -16.65465 -16.23848 -16.03955 -15.84452 -15.50667 -15.28965 -14.87136 -14.68585 -14.35995 -14.11721 -14.00464 -13.93697 -13.38873 -13.35864 -13.20074 -13.01568 -12.75442 -12.66173 -12.57682 -12.34250 -12.24930 -12.15447 -12.05776 -11.93995 -11.75086 -11.61172 -11.56263 -11.30372 -11.03994 -10.66261 -10.45095 -10.33930 -9.87475 -8.33147 -6.48146 -0.57155 1.34550 1.35003 1.49649 1.92222 2.34479 2.78611 2.98172 3.00230 3.15187 3.39975 3.50405 3.80000 3.82555 3.97308 4.02248 4.15104 4.23968 4.28437 4.32210 4.36591 4.40163 4.46349 4.57913 4.58496 4.60614 4.72166 4.79052 4.82102 4.85933 4.90637 4.92344 4.93725 5.02966 5.15787 5.17706 5.20354 5.33180 5.45480 5.53017 5.61346 5.77644 6.17313 6.32404 6.63802 7.25911 8.83399 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021776 B = 0.004567 C = 0.004222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.537400 B = 6128.891128 C = 6629.704883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.409 6.409 3 C 0.094 3.906 4 H 0.090 0.910 5 C -0.151 4.151 6 C 0.110 3.890 7 N -1.005 6.005 8 S 2.614 3.386 9 O -0.998 6.998 10 O -0.985 6.985 11 C -0.571 4.571 12 C -0.032 4.032 13 C -0.521 4.521 14 H 0.024 0.976 15 C 0.027 3.973 16 N -0.939 5.939 17 Si 0.932 3.068 18 H -0.264 1.264 19 H -0.293 1.293 20 H -0.209 1.209 21 C -0.169 4.169 22 C -0.168 4.168 23 C 0.151 3.849 24 H 0.115 0.885 25 C -0.188 4.188 26 C -0.122 4.122 27 H 0.057 0.943 28 H 0.047 0.953 29 H 0.092 0.908 30 H 0.047 0.953 31 H 0.093 0.907 32 H 0.104 0.896 33 H 0.077 0.923 34 H 0.129 0.871 35 H 0.158 0.842 36 H 0.268 0.732 37 H 0.115 0.885 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.119 0.881 41 H 0.051 0.949 42 H 0.108 0.892 43 H 0.069 0.931 44 H 0.051 0.949 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.423 -7.678 17.361 24.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.328 6.328 3 C 0.036 3.964 4 H 0.108 0.892 5 C -0.191 4.191 6 C -0.015 4.015 7 N -0.844 5.844 8 S 2.714 3.286 9 O -0.988 6.988 10 O -0.975 6.975 11 C -0.703 4.703 12 C -0.035 4.035 13 C -0.558 4.558 14 H 0.042 0.958 15 C -0.172 4.172 16 N -0.577 5.577 17 Si 0.754 3.246 18 H -0.190 1.190 19 H -0.220 1.220 20 H -0.131 1.131 21 C -0.206 4.206 22 C -0.207 4.207 23 C 0.046 3.954 24 H 0.133 0.867 25 C -0.246 4.246 26 C -0.161 4.161 27 H 0.075 0.925 28 H 0.065 0.935 29 H 0.111 0.889 30 H 0.066 0.934 31 H 0.112 0.888 32 H 0.122 0.878 33 H 0.096 0.904 34 H 0.147 0.853 35 H 0.175 0.825 36 H 0.077 0.923 37 H 0.133 0.867 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.137 0.863 41 H 0.069 0.931 42 H 0.127 0.873 43 H 0.088 0.912 44 H 0.070 0.930 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -14.805 -8.237 16.543 23.680 hybrid contribution -0.086 1.198 -0.713 1.397 sum -14.892 -7.039 15.830 22.845 Atomic orbital electron populations 1.22978 0.79673 1.03628 1.00970 1.87904 1.21358 1.28408 1.95138 1.22102 0.95024 0.84732 0.94532 0.89190 1.22449 1.01887 0.96062 0.98682 1.21683 0.85898 0.97877 0.96043 1.57984 1.25279 1.77542 1.23643 1.04642 0.73181 0.77195 0.73568 1.93483 1.84209 1.87781 1.33314 1.93526 1.61226 1.60472 1.82269 1.30242 1.05769 1.20747 1.13510 1.18734 0.89100 1.04119 0.91543 1.20465 1.38943 1.04965 0.91428 0.95817 1.25997 0.94682 1.01341 0.95225 1.70085 1.47912 1.29807 1.09875 0.85994 0.79083 0.78756 0.80759 1.18951 1.22022 1.13084 1.23081 0.97636 0.98307 1.01584 1.23100 1.04001 0.92293 1.01272 1.21274 0.98338 0.95156 0.80593 0.86698 1.22694 0.94481 1.03634 1.03762 1.22014 0.95341 0.96451 1.02339 0.92490 0.93463 0.88931 0.93378 0.88844 0.87844 0.90412 0.85312 0.82467 0.92260 0.86721 0.90391 0.90230 0.86337 0.93072 0.87339 0.91171 0.92991 0.87807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 10.82 113.37 1.23 1.53 16 2 O -0.41 -8.40 10.35 -148.98 -1.54 -9.94 16 3 C 0.09 1.77 2.57 30.62 0.08 1.85 16 4 H 0.09 1.21 7.79 -2.39 -0.02 1.19 16 5 C -0.15 -3.43 5.71 30.82 0.18 -3.26 16 6 C 0.11 2.80 6.51 86.51 0.56 3.36 16 7 N -1.00 -28.83 3.20 -489.99 -1.57 -30.40 16 8 S 2.61 106.21 4.39 -56.49 -0.25 105.96 16 9 O -1.00 -51.81 15.67 -127.65 -2.00 -53.81 16 10 O -0.98 -42.74 13.98 -127.65 -1.79 -44.52 16 11 C -0.57 -20.67 5.39 71.98 0.39 -20.28 16 12 C -0.03 -1.44 0.87 -52.93 -0.05 -1.49 16 13 C -0.52 -30.35 8.29 25.60 0.21 -30.14 16 14 H 0.02 1.61 8.06 -2.91 -0.02 1.58 16 15 C 0.03 1.59 5.47 84.65 0.46 2.05 16 16 N -0.94 -60.51 13.96 21.45 0.30 -60.21 16 17 Si 0.93 42.22 24.98 68.60 1.71 43.94 16 18 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 19 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 20 H -0.21 -7.90 5.53 99.48 0.55 -7.35 16 21 C -0.17 -6.46 9.93 30.62 0.30 -6.15 16 22 C -0.17 -6.21 7.37 30.62 0.23 -5.98 16 23 C 0.15 3.15 3.50 44.98 0.16 3.31 16 24 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 25 C -0.19 -4.25 7.71 71.98 0.56 -3.70 16 26 C -0.12 -2.47 4.99 30.67 0.15 -2.32 16 27 H 0.06 0.55 8.09 -2.38 -0.02 0.53 16 28 H 0.05 0.55 7.84 -2.39 -0.02 0.53 16 29 H 0.09 1.00 8.14 -2.38 -0.02 0.98 16 30 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.09 1.70 7.84 -2.39 -0.02 1.68 16 32 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.08 2.44 6.57 -2.39 -0.02 2.43 16 34 H 0.13 4.50 6.77 -2.39 -0.02 4.48 16 35 H 0.16 4.02 6.49 -2.39 -0.02 4.01 16 36 H 0.27 16.02 8.31 -92.71 -0.77 15.25 16 37 H 0.11 3.55 8.14 -2.39 -0.02 3.53 16 38 H 0.08 3.19 8.14 -2.39 -0.02 3.17 16 39 H 0.08 3.13 7.15 -2.39 -0.02 3.12 16 40 H 0.12 3.39 8.14 -2.39 -0.02 3.37 16 41 H 0.05 1.26 4.10 -2.39 -0.01 1.25 16 42 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 43 H 0.07 1.99 6.71 -2.39 -0.02 1.98 16 44 H 0.05 1.34 8.06 -2.39 -0.02 1.32 16 45 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -82.90 352.44 0.14 -82.76 By element: Atomic # 1 Polarization: 26.61 SS G_CDS: 0.81 Total: 27.42 kcal Atomic # 6 Polarization: -65.67 SS G_CDS: 4.46 Total: -61.21 kcal Atomic # 7 Polarization: -89.33 SS G_CDS: -1.27 Total: -90.60 kcal Atomic # 8 Polarization: -102.94 SS G_CDS: -5.33 Total: -108.27 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 1.71 Total: 43.94 kcal Atomic # 16 Polarization: 106.21 SS G_CDS: -0.25 Total: 105.96 kcal Total: -82.90 0.14 -82.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364852859.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.607 kcal (2) G-P(sol) polarization free energy of solvation -82.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds