Wall clock time and date at job start Tue Mar 31 2020 12:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.48577 * 2 1 4 4 C 1.53098 * 109.48145 * 239.97750 * 2 1 3 5 5 C 1.53181 * 109.16235 * 182.40906 * 4 2 1 6 6 N 1.46497 * 109.53916 * 176.85103 * 5 4 2 7 7 S 1.65602 * 120.00013 * 144.99933 * 6 5 4 8 8 O 1.42096 * 104.27823 * 308.92873 * 7 6 5 9 9 O 1.42107 * 104.27963 * 181.06483 * 7 6 5 10 10 C 1.81407 * 104.44941 * 64.99981 * 7 6 5 11 11 C 1.52998 * 109.47269 * 173.30005 * 10 7 6 12 12 C 1.50704 * 115.54996 * 39.95980 * 11 10 7 13 13 H 1.07991 * 120.00299 * 264.83469 * 12 11 10 14 14 C 1.37878 * 119.99830 * 84.83833 * 12 11 10 15 15 N 1.31522 * 119.99668 * 353.16856 * 14 12 11 16 16 Si 1.86797 * 119.99949 * 173.17107 * 14 12 11 17 17 H 1.48498 * 109.47396 * 59.99920 * 16 14 12 18 18 H 1.48505 * 109.46843 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47022 * 299.99787 * 16 14 12 20 20 C 1.52998 * 117.49576 * 254.25574 * 11 10 7 21 21 C 1.52999 * 60.00154 * 252.50954 * 20 11 10 22 22 C 1.53171 * 109.03889 * 56.98347 * 5 4 2 23 23 C 1.53090 * 109.16261 * 303.01925 * 22 5 4 24 24 H 1.08997 * 109.48285 * 177.59285 * 23 22 5 25 25 C 1.53008 * 109.48169 * 297.62598 * 23 22 5 26 26 O 1.42905 * 109.48220 * 120.03873 * 2 1 3 27 27 H 1.08997 * 109.46714 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46638 * 300.01760 * 1 2 3 29 29 H 1.09000 * 109.46795 * 60.02170 * 1 2 3 30 30 H 1.08999 * 109.52011 * 62.50539 * 4 2 1 31 31 H 1.09000 * 109.52251 * 302.31832 * 4 2 1 32 32 H 1.08997 * 109.54142 * 297.02017 * 5 4 2 33 33 H 0.97003 * 120.00382 * 324.99461 * 6 5 4 34 34 H 1.09009 * 109.46698 * 293.29756 * 10 7 6 35 35 H 1.08998 * 109.47131 * 53.29456 * 10 7 6 36 36 H 0.97004 * 119.99538 * 185.03062 * 15 14 12 37 37 H 1.08997 * 117.49996 * 0.02562 * 20 11 10 38 38 H 1.08999 * 117.49694 * 145.02229 * 20 11 10 39 39 H 1.09001 * 117.50128 * 252.51585 * 21 20 11 40 40 H 1.08993 * 117.49945 * 107.48591 * 21 20 11 41 41 H 1.09004 * 109.52189 * 62.91948 * 22 5 4 42 42 H 1.08992 * 109.52600 * 183.10969 * 22 5 4 43 43 H 1.08991 * 109.47083 * 179.97438 * 25 23 22 44 44 H 1.08998 * 109.46483 * 299.94218 * 25 23 22 45 45 H 1.09001 * 109.46775 * 59.93997 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0406 -0.7222 -1.2497 5 6 3.5712 -0.7708 -1.2122 6 7 4.0658 -1.5256 -2.3662 7 16 5.4830 -1.0828 -3.0996 8 8 5.3302 0.3083 -3.3462 9 8 5.6264 -2.0054 -4.1709 10 6 6.7545 -1.3698 -1.8380 11 6 8.1394 -1.1538 -2.4513 12 6 8.2543 0.0082 -3.4041 13 1 8.1500 -0.1526 -4.4669 14 6 8.4928 1.2765 -2.9189 15 7 8.4865 1.4964 -1.6222 16 14 8.8249 2.6824 -4.1032 17 1 7.6576 2.8567 -5.0044 18 1 9.0494 3.9337 -3.3355 19 1 10.0323 2.3745 -4.9110 20 6 8.9829 -2.3958 -2.7461 21 6 9.3556 -1.4768 -1.5810 22 6 4.0177 -1.4601 0.0806 23 6 3.4308 -0.7096 1.2789 24 1 3.7101 -1.2206 2.2002 25 6 3.9761 0.7198 1.3026 26 8 2.0066 -0.6744 1.1663 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3632 0.5141 0.8898 29 1 -0.3633 0.5135 -0.8902 30 1 1.7149 -0.1841 -2.1399 31 1 1.6443 -1.7373 -1.2712 32 1 3.9690 0.2436 -1.2424 33 1 3.5632 -2.2849 -2.7007 34 1 6.6103 -0.6733 -1.0119 35 1 6.6759 -2.3924 -1.4690 36 1 8.5815 2.4003 -1.2832 37 1 8.5510 -3.3667 -2.5035 38 1 9.6211 -2.3726 -3.6294 39 1 10.2390 -0.8491 -1.6978 40 1 9.1691 -1.8431 -0.5716 41 1 3.6613 -2.4902 0.0860 42 1 5.1059 -1.4499 0.1418 43 1 3.5578 1.2541 2.1555 44 1 5.0624 0.6928 1.3886 45 1 3.6971 1.2304 0.3809 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001463457015.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:11 Heat of formation + Delta-G solvation = -108.841395 kcal Electronic energy + Delta-G solvation = -26787.541728 eV Core-core repulsion = 23125.513148 eV Total energy + Delta-G solvation = -3662.028580 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.03252 -36.74432 -36.15870 -35.54168 -34.88860 -33.44593 -32.06288 -31.25811 -28.56385 -28.26950 -26.68425 -25.46782 -22.99640 -22.18235 -21.21524 -19.75095 -19.51244 -18.52292 -16.97553 -16.73848 -16.40134 -16.13780 -15.39317 -14.95602 -14.77674 -14.66902 -14.43852 -14.03816 -13.89422 -13.57688 -13.08364 -12.97336 -12.70858 -12.31252 -12.15353 -11.98326 -11.83390 -11.75167 -11.50059 -11.31889 -11.21165 -11.10887 -11.04359 -10.98271 -10.94093 -10.83270 -10.54797 -10.36128 -10.15282 -10.09972 -9.72782 -9.50838 -9.18152 -8.92219 -8.54424 -8.12629 -6.17504 -4.31851 1.18829 3.33810 3.35399 3.43447 3.54419 3.70163 4.38855 4.57311 4.63168 4.74060 4.79491 4.93961 5.02196 5.07538 5.12690 5.14645 5.27152 5.29463 5.34051 5.40363 5.45943 5.57632 5.64175 5.75435 5.81083 5.88844 5.94784 5.96644 6.00241 6.08371 6.12206 6.26458 6.30004 6.34328 6.40078 6.60233 6.68947 6.93965 7.16282 7.22158 7.33006 7.38206 7.77261 8.17522 8.76596 9.45165 10.89997 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015767 B = 0.004879 C = 0.004703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.446314 B = 5737.349038 C = 5952.018663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.082 3.918 3 H 0.066 0.934 4 C -0.151 4.151 5 C 0.147 3.853 6 N -1.132 6.132 7 S 2.621 3.379 8 O -0.942 6.942 9 O -0.977 6.977 10 C -0.560 4.560 11 C 0.051 3.949 12 C -0.543 4.543 13 H 0.068 0.932 14 C 0.099 3.901 15 N -0.867 5.867 16 Si 0.889 3.111 17 H -0.267 1.267 18 H -0.284 1.284 19 H -0.274 1.274 20 C -0.205 4.205 21 C -0.143 4.143 22 C -0.176 4.176 23 C 0.093 3.907 24 H 0.105 0.895 25 C -0.194 4.194 26 O -0.376 6.376 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.098 0.902 33 H 0.408 0.592 34 H 0.127 0.873 35 H 0.096 0.904 36 H 0.265 0.735 37 H 0.069 0.931 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.065 0.935 41 H 0.078 0.922 42 H 0.084 0.916 43 H 0.063 0.937 44 H 0.076 0.924 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.262 -4.302 7.010 14.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.024 3.976 3 H 0.084 0.916 4 C -0.190 4.190 5 C 0.039 3.961 6 N -0.886 5.886 7 S 2.718 3.282 8 O -0.932 6.932 9 O -0.967 6.967 10 C -0.692 4.692 11 C 0.049 3.951 12 C -0.580 4.580 13 H 0.086 0.914 14 C -0.109 4.109 15 N -0.501 5.501 16 Si 0.716 3.284 17 H -0.192 1.192 18 H -0.210 1.210 19 H -0.199 1.199 20 C -0.242 4.242 21 C -0.182 4.182 22 C -0.215 4.215 23 C 0.034 3.966 24 H 0.122 0.878 25 C -0.251 4.251 26 O -0.295 6.295 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.099 0.901 31 H 0.094 0.906 32 H 0.116 0.884 33 H 0.240 0.760 34 H 0.145 0.855 35 H 0.115 0.885 36 H 0.075 0.925 37 H 0.087 0.913 38 H 0.103 0.897 39 H 0.103 0.897 40 H 0.083 0.917 41 H 0.096 0.904 42 H 0.102 0.898 43 H 0.082 0.918 44 H 0.095 0.905 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -12.153 -3.748 6.453 14.262 hybrid contribution 0.440 0.291 -0.104 0.538 sum -11.713 -3.458 6.349 13.764 Atomic orbital electron populations 1.21750 0.93065 1.02803 1.02391 1.22097 0.94932 0.95828 0.84740 0.91612 1.22510 0.94917 1.02486 0.99136 1.20801 0.94767 0.95891 0.84622 1.56212 1.42601 1.44576 1.45177 1.04694 0.73481 0.74425 0.75594 1.93527 1.84280 1.32136 1.83267 1.93485 1.85991 1.65697 1.51539 1.30060 1.14947 1.07412 1.16803 1.18165 0.85087 0.93725 0.98146 1.20553 1.54064 0.90877 0.92549 0.91383 1.24878 0.92295 0.98625 0.95073 1.69941 1.46665 1.21426 1.12051 0.86670 0.79305 0.80985 0.81468 1.19183 1.20970 1.19911 1.23123 1.06502 0.93931 1.00627 1.22521 1.01223 1.01737 0.92745 1.22892 1.02555 1.00959 0.95094 1.22132 0.80466 0.95800 0.98169 0.87762 1.22536 1.02834 0.96939 1.02838 1.87951 1.20931 1.77682 1.42947 0.91911 0.91871 0.91086 0.90087 0.90563 0.88444 0.76027 0.85493 0.88498 0.92530 0.91277 0.89710 0.89650 0.91660 0.90366 0.89757 0.91801 0.90540 0.91587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 9.56 37.16 0.36 -0.90 16 2 C 0.08 0.90 2.94 -26.68 -0.08 0.83 16 3 H 0.07 0.73 6.34 -51.93 -0.33 0.40 16 4 C -0.15 -1.75 4.95 -26.59 -0.13 -1.88 16 5 C 0.15 2.04 2.47 -67.75 -0.17 1.88 16 6 N -1.13 -17.35 5.37 -4.74 -0.03 -17.38 16 7 S 2.62 54.94 4.60 -107.50 -0.49 54.45 16 8 O -0.94 -23.21 16.57 -57.54 -0.95 -24.16 16 9 O -0.98 -22.76 18.08 -57.54 -1.04 -23.80 16 10 C -0.56 -11.51 5.21 37.16 0.19 -11.31 16 11 C 0.05 1.22 1.64 -155.66 -0.26 0.97 16 12 C -0.54 -14.79 6.92 -34.44 -0.24 -15.03 16 13 H 0.07 1.91 7.82 -52.49 -0.41 1.50 16 14 C 0.10 2.68 5.39 -17.82 -0.10 2.59 16 15 N -0.87 -23.49 12.95 55.43 0.72 -22.77 16 16 Si 0.89 21.66 29.55 -169.99 -5.02 16.63 16 17 H -0.27 -6.66 7.11 56.52 0.40 -6.25 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 20 C -0.20 -4.42 9.88 -26.73 -0.26 -4.68 16 21 C -0.14 -3.22 9.49 -26.73 -0.25 -3.47 16 22 C -0.18 -2.17 5.20 -26.60 -0.14 -2.31 16 23 C 0.09 1.07 3.91 -26.68 -0.10 0.96 16 24 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 25 C -0.19 -2.31 8.65 37.16 0.32 -1.99 16 26 O -0.38 -4.54 10.24 -35.23 -0.36 -4.90 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.10 1.52 5.97 -51.93 -0.31 1.21 16 33 H 0.41 5.27 8.80 -34.47 -0.30 4.97 16 34 H 0.13 2.59 7.21 -51.92 -0.37 2.22 16 35 H 0.10 1.66 7.95 -51.93 -0.41 1.25 16 36 H 0.27 6.88 8.32 -40.82 -0.34 6.54 16 37 H 0.07 1.32 8.08 -51.93 -0.42 0.90 16 38 H 0.08 1.82 8.14 -51.93 -0.42 1.40 16 39 H 0.08 2.03 8.14 -51.93 -0.42 1.61 16 40 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 41 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.08 1.08 6.14 -51.93 -0.32 0.76 16 43 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 45 H 0.07 0.83 4.98 -51.93 -0.26 0.57 16 LS Contribution 364.20 15.07 5.49 5.49 Total: -1.00 -32.23 364.20 -9.89 -42.13 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: -7.35 Total: 8.67 kcal Atomic # 6 Polarization: -33.49 SS G_CDS: -0.86 Total: -34.35 kcal Atomic # 7 Polarization: -40.84 SS G_CDS: 0.69 Total: -40.15 kcal Atomic # 8 Polarization: -50.50 SS G_CDS: -2.35 Total: -52.86 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 16 Polarization: 54.94 SS G_CDS: -0.49 Total: 54.45 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.23 -9.89 -42.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001463457015.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.716 kcal (2) G-P(sol) polarization free energy of solvation -32.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds