Wall clock time and date at job start Tue Mar 31 2020 12:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.48577 * 2 1 4 4 C 1.53098 * 109.48145 * 239.97750 * 2 1 3 5 5 C 1.53181 * 109.16235 * 182.40906 * 4 2 1 6 6 N 1.46497 * 109.53916 * 176.85103 * 5 4 2 7 7 S 1.65602 * 120.00013 * 144.99933 * 6 5 4 8 8 O 1.42096 * 104.27823 * 308.92873 * 7 6 5 9 9 O 1.42107 * 104.27963 * 181.06483 * 7 6 5 10 10 C 1.81407 * 104.44941 * 64.99981 * 7 6 5 11 11 C 1.52998 * 109.47269 * 173.30005 * 10 7 6 12 12 C 1.50704 * 115.54996 * 39.95980 * 11 10 7 13 13 H 1.07991 * 120.00299 * 264.83469 * 12 11 10 14 14 C 1.37878 * 119.99830 * 84.83833 * 12 11 10 15 15 N 1.31522 * 119.99668 * 353.16856 * 14 12 11 16 16 Si 1.86797 * 119.99949 * 173.17107 * 14 12 11 17 17 H 1.48498 * 109.47396 * 59.99920 * 16 14 12 18 18 H 1.48505 * 109.46843 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47022 * 299.99787 * 16 14 12 20 20 C 1.52998 * 117.49576 * 254.25574 * 11 10 7 21 21 C 1.52999 * 60.00154 * 252.50954 * 20 11 10 22 22 C 1.53171 * 109.03889 * 56.98347 * 5 4 2 23 23 C 1.53090 * 109.16261 * 303.01925 * 22 5 4 24 24 H 1.08997 * 109.48285 * 177.59285 * 23 22 5 25 25 C 1.53008 * 109.48169 * 297.62598 * 23 22 5 26 26 O 1.42905 * 109.48220 * 120.03873 * 2 1 3 27 27 H 1.08997 * 109.46714 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46638 * 300.01760 * 1 2 3 29 29 H 1.09000 * 109.46795 * 60.02170 * 1 2 3 30 30 H 1.08999 * 109.52011 * 62.50539 * 4 2 1 31 31 H 1.09000 * 109.52251 * 302.31832 * 4 2 1 32 32 H 1.08997 * 109.54142 * 297.02017 * 5 4 2 33 33 H 0.97003 * 120.00382 * 324.99461 * 6 5 4 34 34 H 1.09009 * 109.46698 * 293.29756 * 10 7 6 35 35 H 1.08998 * 109.47131 * 53.29456 * 10 7 6 36 36 H 0.97004 * 119.99538 * 185.03062 * 15 14 12 37 37 H 1.08997 * 117.49996 * 0.02562 * 20 11 10 38 38 H 1.08999 * 117.49694 * 145.02229 * 20 11 10 39 39 H 1.09001 * 117.50128 * 252.51585 * 21 20 11 40 40 H 1.08993 * 117.49945 * 107.48591 * 21 20 11 41 41 H 1.09004 * 109.52189 * 62.91948 * 22 5 4 42 42 H 1.08992 * 109.52600 * 183.10969 * 22 5 4 43 43 H 1.08991 * 109.47083 * 179.97438 * 25 23 22 44 44 H 1.08998 * 109.46483 * 299.94218 * 25 23 22 45 45 H 1.09001 * 109.46775 * 59.93997 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0406 -0.7222 -1.2497 5 6 3.5712 -0.7708 -1.2122 6 7 4.0658 -1.5256 -2.3662 7 16 5.4830 -1.0828 -3.0996 8 8 5.3302 0.3083 -3.3462 9 8 5.6264 -2.0054 -4.1709 10 6 6.7545 -1.3698 -1.8380 11 6 8.1394 -1.1538 -2.4513 12 6 8.2543 0.0082 -3.4041 13 1 8.1500 -0.1526 -4.4669 14 6 8.4928 1.2765 -2.9189 15 7 8.4865 1.4964 -1.6222 16 14 8.8249 2.6824 -4.1032 17 1 7.6576 2.8567 -5.0044 18 1 9.0494 3.9337 -3.3355 19 1 10.0323 2.3745 -4.9110 20 6 8.9829 -2.3958 -2.7461 21 6 9.3556 -1.4768 -1.5810 22 6 4.0177 -1.4601 0.0806 23 6 3.4308 -0.7096 1.2789 24 1 3.7101 -1.2206 2.2002 25 6 3.9761 0.7198 1.3026 26 8 2.0066 -0.6744 1.1663 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3632 0.5141 0.8898 29 1 -0.3633 0.5135 -0.8902 30 1 1.7149 -0.1841 -2.1399 31 1 1.6443 -1.7373 -1.2712 32 1 3.9690 0.2436 -1.2424 33 1 3.5632 -2.2849 -2.7007 34 1 6.6103 -0.6733 -1.0119 35 1 6.6759 -2.3924 -1.4690 36 1 8.5815 2.4003 -1.2832 37 1 8.5510 -3.3667 -2.5035 38 1 9.6211 -2.3726 -3.6294 39 1 10.2390 -0.8491 -1.6978 40 1 9.1691 -1.8431 -0.5716 41 1 3.6613 -2.4902 0.0860 42 1 5.1059 -1.4499 0.1418 43 1 3.5578 1.2541 2.1555 44 1 5.0624 0.6928 1.3886 45 1 3.6971 1.2304 0.3809 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001463457015.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:10 Heat of formation + Delta-G solvation = -131.397528 kcal Electronic energy + Delta-G solvation = -26788.519835 eV Core-core repulsion = 23125.513148 eV Total energy + Delta-G solvation = -3663.006688 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.97464 -38.53858 -37.88994 -36.80301 -36.56936 -34.29977 -34.09599 -32.31386 -29.92737 -29.53425 -27.67957 -27.39927 -23.99387 -23.12523 -22.95338 -21.48017 -20.64830 -20.03080 -18.52237 -18.32883 -17.67049 -17.18201 -16.90344 -16.64877 -16.43212 -15.95182 -15.68422 -15.42233 -15.05587 -14.87324 -14.83139 -13.93608 -13.85946 -13.74051 -13.52786 -13.17484 -13.05483 -12.94890 -12.88871 -12.85170 -12.79404 -12.73932 -12.64087 -12.44182 -12.33616 -12.15620 -12.07113 -11.90461 -11.84634 -11.60126 -11.07098 -10.86782 -10.54316 -10.44006 -10.36500 -9.90252 -8.23232 -6.40106 -0.44441 1.35403 1.38989 1.44919 2.10301 2.38949 2.83280 3.02806 3.07555 3.34187 3.53906 3.64629 3.75252 3.87274 3.92821 4.05506 4.14417 4.20717 4.33791 4.36650 4.41705 4.52782 4.55549 4.60072 4.62481 4.76268 4.80830 4.85558 4.87891 4.98982 4.99447 5.07213 5.12660 5.16368 5.22126 5.26371 5.34262 5.39253 5.41505 5.61760 5.68394 6.17885 6.21180 6.33445 6.68190 7.37211 8.83352 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015767 B = 0.004879 C = 0.004703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.446314 B = 5737.349038 C = 5952.018663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.079 3.921 3 H 0.060 0.940 4 C -0.147 4.147 5 C 0.139 3.861 6 N -1.113 6.113 7 S 2.629 3.371 8 O -0.989 6.989 9 O -1.006 7.006 10 C -0.551 4.551 11 C 0.014 3.986 12 C -0.558 4.558 13 H 0.045 0.955 14 C 0.063 3.937 15 N -0.879 5.879 16 Si 0.922 3.078 17 H -0.281 1.281 18 H -0.270 1.270 19 H -0.265 1.265 20 C -0.192 4.192 21 C -0.138 4.138 22 C -0.174 4.174 23 C 0.094 3.906 24 H 0.124 0.876 25 C -0.195 4.195 26 O -0.380 6.380 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.075 0.925 33 H 0.422 0.578 34 H 0.126 0.874 35 H 0.136 0.864 36 H 0.267 0.733 37 H 0.101 0.899 38 H 0.078 0.922 39 H 0.063 0.937 40 H 0.088 0.912 41 H 0.095 0.905 42 H 0.079 0.921 43 H 0.074 0.926 44 H 0.067 0.933 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.349 -5.628 8.378 16.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.020 3.980 3 H 0.078 0.922 4 C -0.187 4.187 5 C 0.032 3.968 6 N -0.871 5.871 7 S 2.727 3.273 8 O -0.979 6.979 9 O -0.996 6.996 10 C -0.684 4.684 11 C 0.012 3.988 12 C -0.596 4.596 13 H 0.063 0.937 14 C -0.143 4.143 15 N -0.514 5.514 16 Si 0.747 3.253 17 H -0.207 1.207 18 H -0.195 1.195 19 H -0.190 1.190 20 C -0.229 4.229 21 C -0.177 4.177 22 C -0.213 4.213 23 C 0.036 3.964 24 H 0.141 0.859 25 C -0.252 4.252 26 O -0.300 6.300 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.101 0.899 30 H 0.100 0.900 31 H 0.110 0.890 32 H 0.093 0.907 33 H 0.257 0.743 34 H 0.144 0.856 35 H 0.154 0.846 36 H 0.076 0.924 37 H 0.119 0.881 38 H 0.097 0.903 39 H 0.082 0.918 40 H 0.106 0.894 41 H 0.113 0.887 42 H 0.098 0.902 43 H 0.093 0.907 44 H 0.086 0.914 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.235 -5.078 7.808 16.184 hybrid contribution 0.748 0.684 -0.528 1.143 sum -12.487 -4.394 7.280 15.107 Atomic orbital electron populations 1.21753 0.91235 1.03406 1.03248 1.22214 0.96344 0.95327 0.84095 0.92219 1.22515 0.92939 1.03592 0.99632 1.20990 0.96390 0.94791 0.84637 1.55645 1.40892 1.45117 1.45494 1.04115 0.74414 0.73174 0.75635 1.93469 1.85249 1.34808 1.84324 1.93434 1.86813 1.65910 1.53462 1.29910 1.12610 1.09774 1.16075 1.18316 0.87213 0.94174 0.99076 1.20687 1.54137 0.92550 0.92222 0.93660 1.25365 0.92543 1.00123 0.96240 1.69964 1.47230 1.21736 1.12470 0.86168 0.78862 0.79928 0.80340 1.20657 1.19475 1.18961 1.23208 1.05201 0.94512 0.99985 1.22461 0.99546 1.01604 0.94102 1.22892 1.02361 1.01768 0.94315 1.22193 0.80317 0.95328 0.98570 0.85856 1.22537 1.02357 0.97639 1.02663 1.87955 1.21000 1.77718 1.43315 0.91401 0.91448 0.89876 0.90026 0.88992 0.90737 0.74283 0.85583 0.84626 0.92399 0.88080 0.90333 0.91798 0.89360 0.88690 0.90239 0.90727 0.91385 0.92863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 9.56 71.98 0.69 -1.44 16 2 C 0.08 1.58 2.94 30.63 0.09 1.67 16 3 H 0.06 1.27 6.34 -2.39 -0.02 1.26 16 4 C -0.15 -3.14 4.95 30.69 0.15 -2.99 16 5 C 0.14 3.70 2.47 45.11 0.11 3.81 16 6 N -1.11 -32.71 5.37 -168.91 -0.91 -33.62 16 7 S 2.63 109.77 4.60 -56.49 -0.26 109.51 16 8 O -0.99 -49.96 16.57 -127.65 -2.11 -52.07 16 9 O -1.01 -46.72 18.08 -127.65 -2.31 -49.03 16 10 C -0.55 -21.90 5.21 71.98 0.37 -21.52 16 11 C 0.01 0.67 1.64 -52.93 -0.09 0.59 16 12 C -0.56 -30.88 6.92 25.60 0.18 -30.71 16 13 H 0.05 2.63 7.82 -2.91 -0.02 2.61 16 14 C 0.06 3.46 5.39 84.65 0.46 3.91 16 15 N -0.88 -47.93 12.95 21.45 0.28 -47.65 16 16 Si 0.92 44.69 29.55 68.60 2.03 46.72 16 17 H -0.28 -14.15 7.11 99.48 0.71 -13.44 16 18 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 19 H -0.26 -12.32 7.11 99.48 0.71 -11.61 16 20 C -0.19 -7.95 9.88 30.59 0.30 -7.65 16 21 C -0.14 -6.02 9.49 30.59 0.29 -5.73 16 22 C -0.17 -3.92 5.20 30.68 0.16 -3.76 16 23 C 0.09 1.97 3.91 30.63 0.12 2.09 16 24 H 0.12 2.13 8.14 -2.39 -0.02 2.12 16 25 C -0.19 -4.47 8.65 71.98 0.62 -3.84 16 26 O -0.38 -8.30 10.24 -148.98 -1.53 -9.83 16 27 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.08 1.72 8.14 -2.39 -0.02 1.71 16 31 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.07 2.36 5.97 -2.39 -0.01 2.34 16 33 H 0.42 10.09 8.80 -96.74 -0.85 9.24 16 34 H 0.13 5.04 7.21 -2.39 -0.02 5.02 16 35 H 0.14 4.22 7.95 -2.39 -0.02 4.20 16 36 H 0.27 13.91 8.32 -92.70 -0.77 13.14 16 37 H 0.10 3.51 8.08 -2.39 -0.02 3.49 16 38 H 0.08 3.31 8.14 -2.39 -0.02 3.29 16 39 H 0.06 3.03 8.14 -2.39 -0.02 3.01 16 40 H 0.09 3.39 8.14 -2.39 -0.02 3.37 16 41 H 0.09 1.83 8.14 -2.38 -0.02 1.81 16 42 H 0.08 1.87 6.14 -2.39 -0.01 1.86 16 43 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 44 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 45 H 0.05 1.34 4.98 -2.39 -0.01 1.33 16 Total: -1.00 -69.52 364.20 -1.22 -70.74 By element: Atomic # 1 Polarization: 30.67 SS G_CDS: 0.13 Total: 30.80 kcal Atomic # 6 Polarization: -69.03 SS G_CDS: 3.46 Total: -65.57 kcal Atomic # 7 Polarization: -80.64 SS G_CDS: -0.63 Total: -81.27 kcal Atomic # 8 Polarization: -104.98 SS G_CDS: -5.95 Total: -110.93 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Atomic # 16 Polarization: 109.77 SS G_CDS: -0.26 Total: 109.51 kcal Total: -69.52 -1.22 -70.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001463457015.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.653 kcal (2) G-P(sol) polarization free energy of solvation -69.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds