Wall clock time and date at job start Tue Mar 31 2020 12:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08992 * 109.48259 * 2 1 4 4 C 1.53099 * 109.47756 * 120.02183 * 2 1 3 5 5 C 1.53176 * 109.16413 * 62.38478 * 4 2 1 6 6 N 1.46503 * 109.54236 * 176.85046 * 5 4 2 7 7 S 1.65597 * 120.00251 * 144.72666 * 6 5 4 8 8 O 1.42094 * 104.27948 * 181.34625 * 7 6 5 9 9 O 1.42105 * 104.27293 * 309.20552 * 7 6 5 10 10 C 1.81397 * 104.44821 * 65.27154 * 7 6 5 11 11 C 1.53003 * 109.46849 * 172.94870 * 10 7 6 12 12 C 1.50703 * 115.55004 * 39.94368 * 11 10 7 13 13 H 1.08001 * 119.99050 * 270.90762 * 12 11 10 14 14 C 1.37868 * 120.00134 * 90.90940 * 12 11 10 15 15 N 1.31514 * 119.99858 * 174.75548 * 14 12 11 16 16 Si 1.86801 * 120.00246 * 354.76154 * 14 12 11 17 17 H 1.48496 * 109.47621 * 92.61623 * 16 14 12 18 18 H 1.48502 * 109.46713 * 212.61805 * 16 14 12 19 19 H 1.48500 * 109.46958 * 332.61528 * 16 14 12 20 20 C 1.52999 * 117.50084 * 254.22677 * 11 10 7 21 21 C 1.52997 * 60.00276 * 252.51376 * 20 11 10 22 22 C 1.53178 * 109.03605 * 56.98498 * 5 4 2 23 23 C 1.53097 * 109.15867 * 303.01941 * 22 5 4 24 24 H 1.09006 * 109.47857 * 297.62394 * 23 22 5 25 25 C 1.53001 * 109.47606 * 177.59333 * 23 22 5 26 26 O 1.42895 * 109.41790 * 57.60781 * 23 22 5 27 27 H 1.08998 * 109.47403 * 299.98323 * 1 2 3 28 28 H 1.08999 * 109.46603 * 59.98447 * 1 2 3 29 29 H 1.09000 * 109.46897 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.51696 * 302.48008 * 4 2 1 31 31 H 1.08998 * 109.52022 * 182.29805 * 4 2 1 32 32 H 1.09002 * 109.54396 * 297.02384 * 5 4 2 33 33 H 0.97004 * 119.99677 * 324.99576 * 6 5 4 34 34 H 1.08999 * 109.47192 * 292.95173 * 10 7 6 35 35 H 1.09001 * 109.47042 * 52.95261 * 10 7 6 36 36 H 0.96999 * 119.99993 * 179.97438 * 15 14 12 37 37 H 1.09000 * 117.49701 * 0.02562 * 20 11 10 38 38 H 1.08998 * 117.49914 * 145.02264 * 20 11 10 39 39 H 1.08996 * 117.50189 * 252.50925 * 21 20 11 40 40 H 1.09007 * 117.52108 * 107.47768 * 21 20 11 41 41 H 1.08996 * 109.52700 * 62.91906 * 22 5 4 42 42 H 1.08994 * 109.52023 * 183.11135 * 22 5 4 43 43 H 1.08994 * 109.47196 * 300.05238 * 25 23 22 44 44 H 1.09001 * 109.47159 * 60.05715 * 25 23 22 45 45 H 1.09006 * 109.47009 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0275 0.0000 4 6 2.0404 -0.7222 1.2497 5 6 1.5758 -2.1813 1.2124 6 7 2.1225 -2.8994 2.3664 7 16 1.2297 -4.0830 3.1040 8 8 2.0496 -4.5224 4.1781 9 8 -0.0301 -3.4718 3.3465 10 6 1.0754 -5.3826 1.8479 11 6 0.4151 -6.6156 2.4683 12 6 -0.7159 -6.3356 3.4241 13 1 -0.5114 -6.1890 4.4744 14 6 -2.0115 -6.2667 2.9577 15 7 -3.0083 -6.1254 3.8039 16 14 -2.3511 -6.3741 1.1240 17 1 -2.6144 -7.7872 0.7511 18 1 -3.5372 -5.5450 0.7909 19 1 -1.1716 -5.8754 0.3721 20 6 1.3086 -7.8218 2.7642 21 6 0.3138 -7.8733 1.6030 22 6 2.0769 -2.8322 -0.0805 23 6 1.5650 -2.0285 -1.2788 24 1 0.4754 -2.0553 -1.2957 25 6 2.1107 -2.6374 -2.5720 26 8 2.0068 -0.6743 -1.1662 27 1 -0.3634 0.5136 0.8901 28 1 -0.3632 0.5141 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6417 -0.2356 2.1399 31 1 3.1296 -0.6870 1.2713 32 1 0.4868 -2.2181 1.2425 33 1 3.0059 -2.6787 2.7009 34 1 0.4633 -5.0192 1.0225 35 1 2.0651 -5.6485 1.4768 36 1 -3.9198 -6.0766 3.4757 37 1 2.3669 -7.7368 2.5173 38 1 1.0786 -8.4131 3.6505 39 1 -0.5706 -8.4985 1.7252 40 1 0.7172 -7.8222 0.5916 41 1 3.1668 -2.8398 -0.0859 42 1 1.7043 -3.8547 -0.1416 43 1 3.2002 -2.6110 -2.5546 44 1 1.7736 -3.6704 -2.6578 45 1 1.7466 -2.0649 -3.4252 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001463457019.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:15 Heat of formation + Delta-G solvation = -102.402593 kcal Electronic energy + Delta-G solvation = -26875.520166 eV Core-core repulsion = 23213.770793 eV Total energy + Delta-G solvation = -3661.749373 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.14155 -37.14585 -36.28074 -35.65371 -34.99879 -33.54150 -32.20819 -31.37279 -28.72309 -28.55994 -26.82115 -25.56325 -23.08600 -22.27034 -21.75280 -19.85173 -19.47997 -18.59094 -17.16285 -16.94767 -16.38447 -16.33891 -15.40658 -15.23799 -15.03232 -14.93457 -14.40683 -14.15738 -13.97267 -13.77418 -13.05793 -12.99658 -12.77473 -12.68654 -12.61302 -12.32496 -12.09038 -11.86340 -11.62023 -11.43830 -11.34417 -11.27153 -11.18502 -11.09039 -11.04590 -10.84539 -10.62905 -10.39167 -10.20834 -10.08501 -9.78662 -9.62654 -9.31927 -9.12403 -8.68512 -8.51463 -6.21836 -4.33214 1.02126 3.19235 3.27100 3.30237 3.41341 3.60044 4.30939 4.44201 4.49941 4.60938 4.70399 4.76102 4.79303 4.91108 4.98378 5.05606 5.11291 5.16379 5.20200 5.30766 5.35743 5.41297 5.52028 5.60883 5.68174 5.71088 5.78909 5.83939 5.89273 5.95203 5.97475 6.01344 6.03196 6.14235 6.17550 6.27268 6.38596 6.58268 6.80218 7.03667 7.11758 7.21931 7.55951 8.30989 8.81778 9.40044 10.89709 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014600 B = 0.005433 C = 0.005132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.362339 B = 5152.218020 C = 5454.718878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.091 3.909 3 H 0.106 0.894 4 C -0.152 4.152 5 C 0.145 3.855 6 N -1.130 6.130 7 S 2.626 3.374 8 O -0.967 6.967 9 O -0.934 6.934 10 C -0.585 4.585 11 C 0.009 3.991 12 C -0.536 4.536 13 H 0.087 0.913 14 C 0.101 3.899 15 N -0.872 5.872 16 Si 0.877 3.123 17 H -0.275 1.275 18 H -0.289 1.289 19 H -0.258 1.258 20 C -0.173 4.173 21 C -0.188 4.188 22 C -0.176 4.176 23 C 0.083 3.917 24 H 0.066 0.934 25 C -0.144 4.144 26 O -0.374 6.374 27 H 0.072 0.928 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.096 0.904 33 H 0.410 0.590 34 H 0.120 0.880 35 H 0.107 0.893 36 H 0.269 0.731 37 H 0.076 0.924 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.074 0.926 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.063 0.937 44 H 0.071 0.929 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.466 9.471 -11.847 18.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C 0.032 3.968 3 H 0.123 0.877 4 C -0.191 4.191 5 C 0.037 3.963 6 N -0.885 5.885 7 S 2.721 3.279 8 O -0.958 6.958 9 O -0.924 6.924 10 C -0.716 4.716 11 C 0.007 3.993 12 C -0.573 4.573 13 H 0.105 0.895 14 C -0.106 4.106 15 N -0.506 5.506 16 Si 0.704 3.296 17 H -0.201 1.201 18 H -0.215 1.215 19 H -0.183 1.183 20 C -0.210 4.210 21 C -0.227 4.227 22 C -0.216 4.216 23 C 0.025 3.975 24 H 0.083 0.917 25 C -0.201 4.201 26 O -0.294 6.294 27 H 0.091 0.909 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.102 0.898 31 H 0.096 0.904 32 H 0.114 0.886 33 H 0.242 0.758 34 H 0.138 0.862 35 H 0.126 0.874 36 H 0.079 0.921 37 H 0.094 0.906 38 H 0.112 0.888 39 H 0.110 0.890 40 H 0.093 0.907 41 H 0.099 0.901 42 H 0.098 0.902 43 H 0.082 0.918 44 H 0.090 0.910 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 9.845 9.591 -11.104 17.670 hybrid contribution 0.040 -0.451 -1.295 1.372 sum 9.885 9.140 -12.399 18.303 Atomic orbital electron populations 1.22535 0.96096 1.03394 1.03084 1.22150 0.93741 0.96310 0.84560 0.87672 1.22480 1.02247 0.95071 0.99297 1.20827 0.99031 0.91803 0.84659 1.56224 1.32535 1.54658 1.45080 1.04634 0.73644 0.74364 0.75281 1.93503 1.69247 1.82414 1.50590 1.93573 1.42053 1.73844 1.82916 1.30408 1.07365 1.16701 1.17088 1.18748 0.98017 0.84040 0.98531 1.20412 0.89056 1.52988 0.94809 0.89480 1.24924 0.95728 0.92264 0.97664 1.69877 0.99563 1.46337 1.34829 0.86908 0.78178 0.78343 0.86166 1.20125 1.21510 1.18275 1.22954 0.94453 1.03966 0.99611 1.22949 1.01760 1.03697 0.94270 1.22947 1.03069 1.00668 0.94886 1.22089 0.98545 0.82034 0.94866 0.91650 1.21762 1.01987 1.00514 0.95861 1.87958 1.73742 1.24495 1.43162 0.90919 0.91670 0.91544 0.89783 0.90431 0.88566 0.75783 0.86159 0.87409 0.92125 0.90569 0.88780 0.88993 0.90707 0.90064 0.90151 0.91813 0.90972 0.91818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.96 8.65 37.16 0.32 -1.64 16 2 C 0.09 0.91 3.91 -26.68 -0.10 0.80 16 3 H 0.11 0.87 8.14 -51.93 -0.42 0.44 16 4 C -0.15 -1.61 5.17 -26.59 -0.14 -1.75 16 5 C 0.14 1.88 2.48 -67.75 -0.17 1.71 16 6 N -1.13 -16.33 5.37 -4.73 -0.03 -16.36 16 7 S 2.63 53.26 4.59 -107.50 -0.49 52.77 16 8 O -0.97 -22.05 18.08 -57.54 -1.04 -23.09 16 9 O -0.93 -22.78 16.58 -57.54 -0.95 -23.73 16 10 C -0.58 -11.19 5.08 37.16 0.19 -11.00 16 11 C 0.01 0.21 1.11 -155.66 -0.17 0.04 16 12 C -0.54 -14.92 7.53 -34.44 -0.26 -15.18 16 13 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 14 C 0.10 2.88 5.47 -17.82 -0.10 2.78 16 15 N -0.87 -26.44 13.96 55.43 0.77 -25.67 16 16 Si 0.88 21.03 25.01 -169.99 -4.25 16.78 16 17 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 18 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 19 H -0.26 -5.59 5.43 56.52 0.31 -5.28 16 20 C -0.17 -3.49 9.88 -26.73 -0.26 -3.75 16 21 C -0.19 -3.85 7.58 -26.73 -0.20 -4.06 16 22 C -0.18 -2.02 4.99 -26.59 -0.13 -2.15 16 23 C 0.08 0.90 2.94 -26.68 -0.08 0.82 16 24 H 0.07 0.72 6.34 -51.93 -0.33 0.39 16 25 C -0.14 -1.32 9.56 37.16 0.36 -0.96 16 26 O -0.37 -4.23 10.24 -35.23 -0.36 -4.59 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.75 4.98 -51.93 -0.26 0.49 16 30 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.10 1.39 5.96 -51.93 -0.31 1.08 16 33 H 0.41 4.92 8.80 -34.47 -0.30 4.62 16 34 H 0.12 2.18 5.57 -51.92 -0.29 1.89 16 35 H 0.11 1.64 7.95 -51.92 -0.41 1.23 16 36 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 37 H 0.08 1.32 8.08 -51.93 -0.42 0.90 16 38 H 0.09 1.93 8.14 -51.93 -0.42 1.51 16 39 H 0.09 1.97 7.09 -51.93 -0.37 1.61 16 40 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 41 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.08 0.93 6.19 -51.93 -0.32 0.61 16 43 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 45 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 354.72 15.07 5.35 5.35 Total: -1.00 -34.37 354.72 -9.07 -43.44 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: -7.31 Total: 9.44 kcal Atomic # 6 Polarization: -33.58 SS G_CDS: -0.75 Total: -34.33 kcal Atomic # 7 Polarization: -42.78 SS G_CDS: 0.75 Total: -42.03 kcal Atomic # 8 Polarization: -49.06 SS G_CDS: -2.35 Total: -51.41 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.25 Total: 16.78 kcal Atomic # 16 Polarization: 53.26 SS G_CDS: -0.49 Total: 52.77 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.37 -9.07 -43.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001463457019.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.963 kcal (2) G-P(sol) polarization free energy of solvation -34.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds