Wall clock time and date at job start Tue Mar 31 2020 12:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08992 * 109.48259 * 2 1 4 4 C 1.53099 * 109.47756 * 120.02183 * 2 1 3 5 5 C 1.53176 * 109.16413 * 62.38478 * 4 2 1 6 6 N 1.46503 * 109.54236 * 176.85046 * 5 4 2 7 7 S 1.65597 * 120.00251 * 144.72666 * 6 5 4 8 8 O 1.42094 * 104.27948 * 181.34625 * 7 6 5 9 9 O 1.42105 * 104.27293 * 309.20552 * 7 6 5 10 10 C 1.81397 * 104.44821 * 65.27154 * 7 6 5 11 11 C 1.53003 * 109.46849 * 172.94870 * 10 7 6 12 12 C 1.50703 * 115.55004 * 39.94368 * 11 10 7 13 13 H 1.08001 * 119.99050 * 270.90762 * 12 11 10 14 14 C 1.37868 * 120.00134 * 90.90940 * 12 11 10 15 15 N 1.31514 * 119.99858 * 174.75548 * 14 12 11 16 16 Si 1.86801 * 120.00246 * 354.76154 * 14 12 11 17 17 H 1.48496 * 109.47621 * 92.61623 * 16 14 12 18 18 H 1.48502 * 109.46713 * 212.61805 * 16 14 12 19 19 H 1.48500 * 109.46958 * 332.61528 * 16 14 12 20 20 C 1.52999 * 117.50084 * 254.22677 * 11 10 7 21 21 C 1.52997 * 60.00276 * 252.51376 * 20 11 10 22 22 C 1.53178 * 109.03605 * 56.98498 * 5 4 2 23 23 C 1.53097 * 109.15867 * 303.01941 * 22 5 4 24 24 H 1.09006 * 109.47857 * 297.62394 * 23 22 5 25 25 C 1.53001 * 109.47606 * 177.59333 * 23 22 5 26 26 O 1.42895 * 109.41790 * 57.60781 * 23 22 5 27 27 H 1.08998 * 109.47403 * 299.98323 * 1 2 3 28 28 H 1.08999 * 109.46603 * 59.98447 * 1 2 3 29 29 H 1.09000 * 109.46897 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.51696 * 302.48008 * 4 2 1 31 31 H 1.08998 * 109.52022 * 182.29805 * 4 2 1 32 32 H 1.09002 * 109.54396 * 297.02384 * 5 4 2 33 33 H 0.97004 * 119.99677 * 324.99576 * 6 5 4 34 34 H 1.08999 * 109.47192 * 292.95173 * 10 7 6 35 35 H 1.09001 * 109.47042 * 52.95261 * 10 7 6 36 36 H 0.96999 * 119.99993 * 179.97438 * 15 14 12 37 37 H 1.09000 * 117.49701 * 0.02562 * 20 11 10 38 38 H 1.08998 * 117.49914 * 145.02264 * 20 11 10 39 39 H 1.08996 * 117.50189 * 252.50925 * 21 20 11 40 40 H 1.09007 * 117.52108 * 107.47768 * 21 20 11 41 41 H 1.08996 * 109.52700 * 62.91906 * 22 5 4 42 42 H 1.08994 * 109.52023 * 183.11135 * 22 5 4 43 43 H 1.08994 * 109.47196 * 300.05238 * 25 23 22 44 44 H 1.09001 * 109.47159 * 60.05715 * 25 23 22 45 45 H 1.09006 * 109.47009 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0275 0.0000 4 6 2.0404 -0.7222 1.2497 5 6 1.5758 -2.1813 1.2124 6 7 2.1225 -2.8994 2.3664 7 16 1.2297 -4.0830 3.1040 8 8 2.0496 -4.5224 4.1781 9 8 -0.0301 -3.4718 3.3465 10 6 1.0754 -5.3826 1.8479 11 6 0.4151 -6.6156 2.4683 12 6 -0.7159 -6.3356 3.4241 13 1 -0.5114 -6.1890 4.4744 14 6 -2.0115 -6.2667 2.9577 15 7 -3.0083 -6.1254 3.8039 16 14 -2.3511 -6.3741 1.1240 17 1 -2.6144 -7.7872 0.7511 18 1 -3.5372 -5.5450 0.7909 19 1 -1.1716 -5.8754 0.3721 20 6 1.3086 -7.8218 2.7642 21 6 0.3138 -7.8733 1.6030 22 6 2.0769 -2.8322 -0.0805 23 6 1.5650 -2.0285 -1.2788 24 1 0.4754 -2.0553 -1.2957 25 6 2.1107 -2.6374 -2.5720 26 8 2.0068 -0.6743 -1.1662 27 1 -0.3634 0.5136 0.8901 28 1 -0.3632 0.5141 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6417 -0.2356 2.1399 31 1 3.1296 -0.6870 1.2713 32 1 0.4868 -2.2181 1.2425 33 1 3.0059 -2.6787 2.7009 34 1 0.4633 -5.0192 1.0225 35 1 2.0651 -5.6485 1.4768 36 1 -3.9198 -6.0766 3.4757 37 1 2.3669 -7.7368 2.5173 38 1 1.0786 -8.4131 3.6505 39 1 -0.5706 -8.4985 1.7252 40 1 0.7172 -7.8222 0.5916 41 1 3.1668 -2.8398 -0.0859 42 1 1.7043 -3.8547 -0.1416 43 1 3.2002 -2.6110 -2.5546 44 1 1.7736 -3.6704 -2.6578 45 1 1.7466 -2.0649 -3.4252 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001463457019.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:14 Heat of formation + Delta-G solvation = -129.528689 kcal Electronic energy + Delta-G solvation = -26876.696442 eV Core-core repulsion = 23213.770793 eV Total energy + Delta-G solvation = -3662.925649 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.98385 -38.84298 -37.96207 -36.84558 -36.60387 -34.33740 -34.29480 -32.33152 -30.18148 -29.53011 -27.77501 -27.47444 -23.98180 -23.34775 -23.11627 -21.40951 -20.64672 -20.06854 -18.74029 -18.39114 -17.72626 -17.21512 -17.08629 -16.74043 -16.41742 -15.88540 -15.72682 -15.42838 -15.10557 -14.91835 -14.83065 -14.55682 -14.23590 -13.83798 -13.51651 -13.18677 -13.09663 -13.00058 -12.93584 -12.85825 -12.80888 -12.71429 -12.57611 -12.39364 -12.26212 -12.11353 -12.05226 -11.93053 -11.81251 -11.68685 -11.03175 -10.94286 -10.73816 -10.51550 -10.42305 -10.16984 -8.36713 -6.52988 -0.54144 1.30779 1.33631 1.45505 2.04336 2.32216 2.83110 2.91468 2.99879 3.14324 3.44562 3.57761 3.74184 3.78684 3.90678 3.97944 4.12458 4.12989 4.25818 4.34513 4.35808 4.39545 4.44367 4.53096 4.57043 4.61093 4.69353 4.80529 4.85908 4.89627 4.94426 5.01263 5.05369 5.13947 5.14241 5.18477 5.26900 5.34630 5.39459 5.46885 5.60952 6.13714 6.15679 6.33283 6.61125 7.24100 8.79971 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014600 B = 0.005433 C = 0.005132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.362339 B = 5152.218020 C = 5454.718878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.092 3.908 3 H 0.127 0.873 4 C -0.150 4.150 5 C 0.134 3.866 6 N -1.110 6.110 7 S 2.623 3.377 8 O -1.004 7.004 9 O -0.991 6.991 10 C -0.572 4.572 11 C -0.030 4.030 12 C -0.536 4.536 13 H 0.027 0.973 14 C 0.037 3.963 15 N -0.934 5.934 16 Si 0.930 3.070 17 H -0.259 1.259 18 H -0.295 1.295 19 H -0.212 1.212 20 C -0.167 4.167 21 C -0.171 4.171 22 C -0.174 4.174 23 C 0.078 3.922 24 H 0.060 0.940 25 C -0.142 4.142 26 O -0.381 6.381 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.051 0.949 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.076 0.924 33 H 0.423 0.577 34 H 0.136 0.864 35 H 0.160 0.840 36 H 0.269 0.731 37 H 0.116 0.884 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.119 0.881 41 H 0.096 0.904 42 H 0.084 0.916 43 H 0.068 0.932 44 H 0.082 0.918 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.073 9.430 -15.926 22.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.034 3.966 3 H 0.144 0.856 4 C -0.189 4.189 5 C 0.027 3.973 6 N -0.869 5.869 7 S 2.721 3.279 8 O -0.995 6.995 9 O -0.980 6.980 10 C -0.704 4.704 11 C -0.033 4.033 12 C -0.574 4.574 13 H 0.045 0.955 14 C -0.164 4.164 15 N -0.571 5.571 16 Si 0.752 3.248 17 H -0.184 1.184 18 H -0.222 1.222 19 H -0.134 1.134 20 C -0.204 4.204 21 C -0.209 4.209 22 C -0.214 4.214 23 C 0.020 3.980 24 H 0.078 0.922 25 C -0.199 4.199 26 O -0.300 6.300 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.070 0.930 30 H 0.099 0.901 31 H 0.112 0.888 32 H 0.094 0.906 33 H 0.259 0.741 34 H 0.154 0.846 35 H 0.178 0.822 36 H 0.078 0.922 37 H 0.134 0.866 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.138 0.862 41 H 0.115 0.885 42 H 0.103 0.897 43 H 0.087 0.913 44 H 0.101 0.899 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 12.498 9.559 -15.161 21.850 hybrid contribution -0.726 -0.412 0.097 0.840 sum 11.772 9.147 -15.063 21.193 Atomic orbital electron populations 1.22559 0.96583 1.02595 1.03599 1.22248 0.93391 0.97137 0.83854 0.85583 1.22500 1.03220 0.93454 0.99721 1.21067 0.98163 0.93313 0.84735 1.55622 1.32524 1.53399 1.45390 1.04268 0.72699 0.75212 0.75761 1.93443 1.69563 1.83283 1.53190 1.93511 1.44949 1.75252 1.84335 1.30217 1.10223 1.13860 1.16137 1.18699 0.98097 0.86518 0.99944 1.20520 0.91321 1.52136 0.93416 0.95515 1.25960 0.95329 0.91821 1.03269 1.70052 1.00176 1.49199 1.37646 0.86050 0.79457 0.79302 0.80013 1.18364 1.22237 1.13447 1.23073 0.96503 1.01479 0.99324 1.23051 1.01273 1.00417 0.96208 1.22954 1.03985 1.00701 0.93727 1.22197 0.98447 0.81915 0.95468 0.92190 1.21773 1.02252 1.00995 0.94879 1.87959 1.73801 1.24788 1.43473 0.90818 0.90798 0.93002 0.90050 0.88826 0.90553 0.74117 0.84562 0.82243 0.92191 0.86561 0.90568 0.90520 0.86247 0.88548 0.89728 0.91322 0.89926 0.91540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.71 8.65 71.98 0.62 -3.09 16 2 C 0.09 1.61 3.91 30.63 0.12 1.73 16 3 H 0.13 1.70 8.14 -2.39 -0.02 1.68 16 4 C -0.15 -2.86 5.17 30.69 0.16 -2.70 16 5 C 0.13 3.22 2.48 45.11 0.11 3.33 16 6 N -1.11 -30.21 5.37 -168.89 -0.91 -31.11 16 7 S 2.62 105.95 4.59 -56.49 -0.26 105.69 16 8 O -1.00 -46.51 18.08 -127.65 -2.31 -48.82 16 9 O -0.99 -50.35 16.58 -127.65 -2.12 -52.47 16 10 C -0.57 -19.90 5.08 71.98 0.37 -19.54 16 11 C -0.03 -1.32 1.11 -52.92 -0.06 -1.38 16 12 C -0.54 -30.92 7.53 25.60 0.19 -30.73 16 13 H 0.03 1.79 8.06 -2.91 -0.02 1.77 16 14 C 0.04 2.17 5.47 84.65 0.46 2.63 16 15 N -0.93 -59.89 13.96 21.44 0.30 -59.59 16 16 Si 0.93 42.27 25.01 68.60 1.72 43.99 16 17 H -0.26 -11.03 7.11 99.48 0.71 -10.33 16 18 H -0.30 -13.67 7.11 99.48 0.71 -12.96 16 19 H -0.21 -7.98 5.43 99.48 0.54 -7.44 16 20 C -0.17 -6.26 9.88 30.59 0.30 -5.95 16 21 C -0.17 -6.28 7.58 30.59 0.23 -6.04 16 22 C -0.17 -3.34 4.99 30.69 0.15 -3.19 16 23 C 0.08 1.44 2.94 30.63 0.09 1.53 16 24 H 0.06 1.17 6.34 -2.38 -0.02 1.16 16 25 C -0.14 -2.06 9.56 71.98 0.69 -1.37 16 26 O -0.38 -7.45 10.24 -148.98 -1.52 -8.98 16 27 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.05 1.13 4.98 -2.39 -0.01 1.12 16 30 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 31 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.08 2.16 5.96 -2.39 -0.01 2.15 16 33 H 0.42 9.30 8.80 -96.74 -0.85 8.45 16 34 H 0.14 4.31 5.57 -2.39 -0.01 4.30 16 35 H 0.16 3.88 7.95 -2.39 -0.02 3.87 16 36 H 0.27 16.03 8.31 -92.71 -0.77 15.26 16 37 H 0.12 3.43 8.08 -2.39 -0.02 3.41 16 38 H 0.08 3.09 8.14 -2.39 -0.02 3.07 16 39 H 0.08 3.06 7.09 -2.39 -0.02 3.04 16 40 H 0.12 3.37 8.14 -2.38 -0.02 3.35 16 41 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.08 1.54 6.19 -2.39 -0.01 1.53 16 43 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 45 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 Total: -1.00 -80.98 354.72 -1.69 -82.67 By element: Atomic # 1 Polarization: 33.40 SS G_CDS: -0.03 Total: 33.37 kcal Atomic # 6 Polarization: -68.20 SS G_CDS: 3.44 Total: -64.76 kcal Atomic # 7 Polarization: -90.09 SS G_CDS: -0.61 Total: -90.70 kcal Atomic # 8 Polarization: -104.32 SS G_CDS: -5.95 Total: -110.26 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 1.72 Total: 43.99 kcal Atomic # 16 Polarization: 105.95 SS G_CDS: -0.26 Total: 105.69 kcal Total: -80.98 -1.69 -82.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001463457019.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.863 kcal (2) G-P(sol) polarization free energy of solvation -80.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds