Wall clock time and date at job start Tue Mar 31 2020 11:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50703 * 109.47319 * 2 1 4 4 N 1.27943 * 119.99671 * 25.00179 * 3 2 1 5 5 Si 1.86797 * 120.00069 * 205.00311 * 3 2 1 6 6 H 1.48492 * 109.47399 * 90.00135 * 5 3 2 7 7 H 1.48502 * 109.46763 * 209.99815 * 5 3 2 8 8 H 1.48494 * 109.47249 * 329.99648 * 5 3 2 9 9 C 1.50699 * 109.47061 * 120.00399 * 2 1 3 10 10 O 1.21286 * 119.99357 * 253.29535 * 9 2 1 11 11 N 1.34769 * 120.00475 * 73.29817 * 9 2 1 12 12 C 1.47073 * 136.05429 * 5.84082 * 11 9 2 13 13 C 1.53500 * 87.98449 * 207.15299 * 12 11 9 14 14 C 1.47071 * 136.06263 * 185.88806 * 11 9 2 15 15 H 1.08997 * 113.46415 * 267.68291 * 14 11 9 16 16 C 1.52994 * 113.46191 * 38.06418 * 14 11 9 17 17 N 1.46496 * 109.47332 * 295.91391 * 16 14 11 18 18 C 1.34785 * 120.00082 * 173.90042 * 17 16 14 19 19 O 1.21775 * 119.99631 * 359.97438 * 18 17 16 20 20 C 1.41514 * 119.99870 * 179.97438 * 18 17 16 21 21 C 1.35618 * 120.00003 * 188.36139 * 20 18 17 22 22 C 1.41675 * 119.99753 * 32.19220 * 21 20 18 23 23 C 1.38277 * 126.25843 * 187.16640 * 22 21 20 24 24 C 1.39794 * 107.07648 * 180.02562 * 23 22 21 25 25 C 1.35494 * 107.91059 * 0.02562 * 24 23 22 26 26 N 1.35757 * 108.91445 * 359.97438 * 25 24 23 27 27 H 0.96996 * 125.69625 * 179.73758 * 26 25 24 28 28 H 1.09001 * 109.47109 * 64.38558 * 1 2 3 29 29 H 1.08999 * 109.47206 * 184.38465 * 1 2 3 30 30 H 1.09002 * 109.46959 * 304.38683 * 1 2 3 31 31 H 1.09008 * 109.46936 * 240.00111 * 2 1 3 32 32 H 0.97000 * 120.00100 * 180.02562 * 4 3 2 33 33 H 1.09001 * 113.46552 * 321.93125 * 12 11 9 34 34 H 1.09003 * 113.46941 * 92.37521 * 12 11 9 35 35 H 1.09001 * 114.20507 * 220.34348 * 13 12 11 36 36 H 1.09003 * 114.20475 * 87.51623 * 13 12 11 37 37 H 1.09004 * 109.47167 * 175.91253 * 16 14 11 38 38 H 1.08997 * 109.47387 * 55.91612 * 16 14 11 39 39 H 0.96998 * 120.00234 * 353.89157 * 17 16 14 40 40 H 1.08001 * 120.00164 * 8.36587 * 20 18 17 41 41 H 1.08001 * 120.00523 * 212.18738 * 21 20 18 42 42 H 1.07999 * 126.46207 * 0.07130 * 23 22 21 43 43 H 1.08004 * 126.04361 * 180.02562 * 24 23 22 44 44 H 1.08001 * 125.54871 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 1.2989 2.3587 0.4683 5 14 3.7260 1.8127 -0.6837 6 1 3.6170 2.1138 -2.1337 7 1 4.2857 2.9910 0.0258 8 1 4.6217 0.6448 -0.4867 9 6 2.0323 -0.7105 1.2304 10 8 2.5191 -0.0747 2.1414 11 7 1.9407 -2.0522 1.3185 12 6 1.5319 -3.1466 0.4251 13 6 1.1478 -3.9508 1.6748 14 6 2.2048 -3.0663 2.3504 15 1 3.2121 -3.4801 2.3045 16 6 1.8133 -2.6175 3.7597 17 7 2.6421 -1.4766 4.1568 18 6 2.3923 -0.8326 5.3142 19 8 1.4774 -1.1988 6.0295 20 6 3.1932 0.2692 5.6980 21 6 3.0549 0.8102 6.9338 22 6 2.6968 -0.0118 8.0308 23 6 2.3867 0.4182 9.3080 24 6 2.0962 -0.7204 10.0652 25 6 2.2303 -1.8018 9.2599 26 7 2.5948 -1.3849 8.0204 27 1 2.7602 -1.9589 7.2562 28 1 -0.3633 0.4443 -0.9267 29 1 -0.3633 -1.0246 0.0786 30 1 -0.3633 0.5804 0.8481 31 1 1.8933 -0.5139 -0.8901 32 1 1.6220 3.2733 0.4680 33 1 0.6809 -2.8952 -0.2079 34 1 2.3597 -3.5826 -0.1342 35 1 1.4136 -5.0067 1.6260 36 1 0.1298 -3.7760 2.0233 37 1 1.9677 -3.4395 4.4588 38 1 0.7635 -2.3247 3.7694 39 1 3.3707 -1.1847 3.5869 40 1 3.9146 0.6793 5.0066 41 1 3.2178 1.8675 7.0819 42 1 2.3712 1.4409 9.6548 43 1 1.8146 -0.7354 11.1078 44 1 2.0727 -2.8284 9.5558 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689522503.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:40 Heat of formation + Delta-G solvation = 85.481574 kcal Electronic energy + Delta-G solvation = -27363.518914 eV Core-core repulsion = 23593.109870 eV Total energy + Delta-G solvation = -3770.409044 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.160 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.11287 -41.82277 -40.12766 -39.36514 -37.00309 -35.51704 -34.44826 -33.29938 -31.61174 -30.86839 -30.07327 -28.52518 -26.38887 -25.16104 -23.88409 -23.47161 -21.59623 -21.16778 -21.04631 -20.51456 -19.63111 -18.97107 -18.33554 -17.65062 -17.44272 -17.14659 -16.99356 -15.98948 -15.80556 -15.36450 -15.16655 -14.93200 -14.90780 -14.69779 -14.68808 -14.62486 -14.14592 -13.84276 -13.76429 -13.50939 -13.29983 -13.19876 -13.05634 -12.99167 -12.94922 -12.71611 -12.68025 -12.36389 -12.24584 -11.98593 -11.61437 -10.84237 -10.63535 -10.48345 -9.95718 -9.88887 -9.78753 -9.49005 -8.24352 -0.23289 0.72164 0.99858 1.32070 1.43979 1.54592 1.77063 1.81590 1.90104 2.27408 2.50303 2.66571 2.82827 3.10733 3.35230 3.36826 3.59636 3.78526 3.90840 3.93897 4.08583 4.16124 4.17954 4.27851 4.28845 4.32914 4.46277 4.53220 4.58948 4.65246 4.67094 4.70212 4.78107 4.82531 4.87293 4.95242 5.02178 5.21029 5.29276 5.32852 5.58162 5.60129 5.65923 6.22794 6.40042 6.53335 6.79097 6.84169 6.88797 7.07614 7.54032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.074 4.074 3 C 0.010 3.990 4 N -0.609 5.609 5 Si 0.934 3.066 6 H -0.239 1.239 7 H -0.243 1.243 8 H -0.236 1.236 9 C 0.557 3.443 10 O -0.520 6.520 11 N -0.646 5.646 12 C 0.097 3.903 13 C -0.145 4.145 14 C 0.118 3.882 15 H 0.101 0.899 16 C 0.115 3.885 17 N -0.710 5.710 18 C 0.549 3.451 19 O -0.563 6.563 20 C -0.283 4.283 21 C 0.046 3.954 22 C 0.004 3.996 23 C -0.143 4.143 24 C -0.216 4.216 25 C 0.021 3.979 26 N -0.510 5.510 27 H 0.416 0.584 28 H 0.068 0.932 29 H 0.057 0.943 30 H 0.075 0.925 31 H 0.108 0.892 32 H 0.341 0.659 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.097 0.903 36 H 0.101 0.899 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.408 0.592 40 H 0.132 0.868 41 H 0.145 0.855 42 H 0.141 0.859 43 H 0.138 0.862 44 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.233 -4.795 -6.291 8.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.096 4.096 3 C -0.240 4.240 4 N -0.222 5.222 5 Si 0.750 3.250 6 H -0.163 1.163 7 H -0.166 1.166 8 H -0.159 1.159 9 C 0.346 3.654 10 O -0.395 6.395 11 N -0.383 5.383 12 C -0.026 4.026 13 C -0.183 4.183 14 C 0.015 3.985 15 H 0.119 0.881 16 C -0.010 4.010 17 N -0.364 5.364 18 C 0.343 3.657 19 O -0.447 6.447 20 C -0.305 4.305 21 C 0.026 3.974 22 C -0.108 4.108 23 C -0.169 4.169 24 C -0.240 4.240 25 C -0.118 4.118 26 N -0.106 5.106 27 H 0.259 0.741 28 H 0.088 0.912 29 H 0.076 0.924 30 H 0.094 0.906 31 H 0.126 0.874 32 H 0.158 0.842 33 H 0.104 0.896 34 H 0.110 0.890 35 H 0.116 0.884 36 H 0.119 0.881 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.247 0.753 40 H 0.150 0.850 41 H 0.163 0.837 42 H 0.159 0.841 43 H 0.156 0.844 44 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 1.781 -4.304 -5.447 7.167 hybrid contribution 0.770 0.273 -0.942 1.247 sum 2.551 -4.030 -6.388 7.973 Atomic orbital electron populations 1.21588 0.90775 1.02106 1.04250 1.20478 0.99361 0.92836 0.96931 1.29685 1.03681 0.95536 0.95134 1.68052 1.38011 1.05424 1.10684 0.85697 0.75561 0.82834 0.80954 1.16256 1.16551 1.15866 1.19893 0.77671 0.79525 0.88288 1.90613 1.44503 1.64443 1.39968 1.49794 1.67324 1.03635 1.17580 1.23059 1.00302 0.84631 0.94631 1.23470 0.99809 0.99433 0.95573 1.23055 1.00155 0.86532 0.88775 0.88084 1.21518 0.96467 0.89383 0.93618 1.46076 1.35238 1.31727 1.23342 1.17116 0.85111 0.82233 0.81264 1.90847 1.32912 1.67372 1.53572 1.21783 1.05765 1.03225 0.99772 1.20828 0.88559 0.97824 0.90227 1.18232 1.13823 0.83202 0.95499 1.21519 1.03998 0.99011 0.92369 1.20841 1.10931 0.92056 1.00219 1.22102 1.04604 0.99859 0.85192 1.42600 1.50089 1.06843 1.11036 0.74147 0.91250 0.92353 0.90584 0.87409 0.84217 0.89641 0.89046 0.88437 0.88080 0.90693 0.90884 0.75270 0.84996 0.83730 0.84143 0.84434 0.81884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.08 8.76 37.16 0.33 0.41 16 2 C -0.07 0.05 2.48 -92.92 -0.23 -0.18 16 3 C 0.01 0.00 4.12 -13.90 -0.06 -0.05 16 4 N -0.61 -1.14 12.60 56.23 0.71 -0.43 16 5 Si 0.93 -0.50 29.45 -169.99 -5.01 -5.51 16 6 H -0.24 0.16 7.11 56.52 0.40 0.56 16 7 H -0.24 -0.15 7.11 56.52 0.40 0.25 16 8 H -0.24 0.03 7.11 56.52 0.40 0.43 16 9 C 0.56 0.50 7.05 -10.99 -0.08 0.42 16 10 O -0.52 -1.93 13.02 5.55 0.07 -1.86 16 11 N -0.65 1.08 3.57 -177.42 -0.63 0.45 16 12 C 0.10 -0.48 8.39 -8.50 -0.07 -0.55 16 13 C -0.14 0.72 8.02 -26.22 -0.21 0.51 16 14 C 0.12 -0.32 4.12 -72.39 -0.30 -0.62 16 15 H 0.10 -0.40 8.14 -51.93 -0.42 -0.82 16 16 C 0.12 0.02 5.61 -4.05 -0.02 0.00 16 17 N -0.71 -1.54 3.94 -63.26 -0.25 -1.79 16 18 C 0.55 2.54 6.32 -15.01 -0.09 2.44 16 19 O -0.56 -4.14 12.70 5.12 0.07 -4.08 16 20 C -0.28 -0.97 9.72 -39.27 -0.38 -1.36 16 21 C 0.05 0.15 9.76 -39.21 -0.38 -0.23 16 22 C 0.00 0.02 5.95 -83.90 -0.50 -0.48 16 23 C -0.14 -0.60 10.86 -38.99 -0.42 -1.02 16 24 C -0.22 -0.82 10.81 -39.98 -0.43 -1.25 16 25 C 0.02 0.07 11.90 -16.79 -0.20 -0.13 16 26 N -0.51 -2.22 4.50 -10.56 -0.05 -2.27 16 27 H 0.42 1.62 6.14 -40.82 -0.25 1.37 16 28 H 0.07 -0.09 8.14 -51.93 -0.42 -0.51 16 29 H 0.06 -0.11 7.22 -51.93 -0.37 -0.49 16 30 H 0.08 0.17 7.62 -51.93 -0.40 -0.23 16 31 H 0.11 -0.39 7.85 -51.92 -0.41 -0.80 16 32 H 0.34 0.13 8.23 -40.82 -0.34 -0.20 16 33 H 0.09 -0.49 7.25 -51.93 -0.38 -0.87 16 34 H 0.09 -0.58 8.14 -51.93 -0.42 -1.01 16 35 H 0.10 -0.64 8.14 -51.93 -0.42 -1.06 16 36 H 0.10 -0.43 8.06 -51.93 -0.42 -0.85 16 37 H 0.07 -0.05 8.14 -51.93 -0.42 -0.47 16 38 H 0.07 0.18 8.04 -51.93 -0.42 -0.24 16 39 H 0.41 0.78 6.33 -40.82 -0.26 0.52 16 40 H 0.13 0.26 8.06 -52.49 -0.42 -0.16 16 41 H 0.15 0.06 8.06 -52.49 -0.42 -0.36 16 42 H 0.14 0.29 8.06 -52.49 -0.42 -0.14 16 43 H 0.14 0.27 8.06 -52.48 -0.42 -0.16 16 44 H 0.16 0.06 8.06 -52.49 -0.42 -0.36 16 LS Contribution 362.70 15.07 5.47 5.47 Total: 0.00 -8.77 362.70 -8.94 -17.71 By element: Atomic # 1 Polarization: 0.66 SS G_CDS: -6.26 Total: -5.60 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: -3.06 Total: -2.10 kcal Atomic # 7 Polarization: -3.82 SS G_CDS: -0.22 Total: -4.04 kcal Atomic # 8 Polarization: -6.07 SS G_CDS: 0.14 Total: -5.94 kcal Atomic # 14 Polarization: -0.50 SS G_CDS: -5.01 Total: -5.51 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -8.77 -8.94 -17.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689522503.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.195 kcal (2) G-P(sol) polarization free energy of solvation -8.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds