Wall clock time and date at job start Tue Mar 31 2020 11:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50703 * 109.47319 * 2 1 4 4 N 1.27943 * 119.99671 * 25.00179 * 3 2 1 5 5 Si 1.86797 * 120.00069 * 205.00311 * 3 2 1 6 6 H 1.48492 * 109.47399 * 90.00135 * 5 3 2 7 7 H 1.48502 * 109.46763 * 209.99815 * 5 3 2 8 8 H 1.48494 * 109.47249 * 329.99648 * 5 3 2 9 9 C 1.50699 * 109.47061 * 120.00399 * 2 1 3 10 10 O 1.21286 * 119.99357 * 253.29535 * 9 2 1 11 11 N 1.34769 * 120.00475 * 73.29817 * 9 2 1 12 12 C 1.47073 * 136.05429 * 5.84082 * 11 9 2 13 13 C 1.53500 * 87.98449 * 207.15299 * 12 11 9 14 14 C 1.47071 * 136.06263 * 185.88806 * 11 9 2 15 15 H 1.08997 * 113.46415 * 267.68291 * 14 11 9 16 16 C 1.52994 * 113.46191 * 38.06418 * 14 11 9 17 17 N 1.46496 * 109.47332 * 295.91391 * 16 14 11 18 18 C 1.34785 * 120.00082 * 173.90042 * 17 16 14 19 19 O 1.21775 * 119.99631 * 359.97438 * 18 17 16 20 20 C 1.41514 * 119.99870 * 179.97438 * 18 17 16 21 21 C 1.35618 * 120.00003 * 188.36139 * 20 18 17 22 22 C 1.41675 * 119.99753 * 32.19220 * 21 20 18 23 23 C 1.38277 * 126.25843 * 187.16640 * 22 21 20 24 24 C 1.39794 * 107.07648 * 180.02562 * 23 22 21 25 25 C 1.35494 * 107.91059 * 0.02562 * 24 23 22 26 26 N 1.35757 * 108.91445 * 359.97438 * 25 24 23 27 27 H 0.96996 * 125.69625 * 179.73758 * 26 25 24 28 28 H 1.09001 * 109.47109 * 64.38558 * 1 2 3 29 29 H 1.08999 * 109.47206 * 184.38465 * 1 2 3 30 30 H 1.09002 * 109.46959 * 304.38683 * 1 2 3 31 31 H 1.09008 * 109.46936 * 240.00111 * 2 1 3 32 32 H 0.97000 * 120.00100 * 180.02562 * 4 3 2 33 33 H 1.09001 * 113.46552 * 321.93125 * 12 11 9 34 34 H 1.09003 * 113.46941 * 92.37521 * 12 11 9 35 35 H 1.09001 * 114.20507 * 220.34348 * 13 12 11 36 36 H 1.09003 * 114.20475 * 87.51623 * 13 12 11 37 37 H 1.09004 * 109.47167 * 175.91253 * 16 14 11 38 38 H 1.08997 * 109.47387 * 55.91612 * 16 14 11 39 39 H 0.96998 * 120.00234 * 353.89157 * 17 16 14 40 40 H 1.08001 * 120.00164 * 8.36587 * 20 18 17 41 41 H 1.08001 * 120.00523 * 212.18738 * 21 20 18 42 42 H 1.07999 * 126.46207 * 0.07130 * 23 22 21 43 43 H 1.08004 * 126.04361 * 180.02562 * 24 23 22 44 44 H 1.08001 * 125.54871 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 1.2989 2.3587 0.4683 5 14 3.7260 1.8127 -0.6837 6 1 3.6170 2.1138 -2.1337 7 1 4.2857 2.9910 0.0258 8 1 4.6217 0.6448 -0.4867 9 6 2.0323 -0.7105 1.2304 10 8 2.5191 -0.0747 2.1414 11 7 1.9407 -2.0522 1.3185 12 6 1.5319 -3.1466 0.4251 13 6 1.1478 -3.9508 1.6748 14 6 2.2048 -3.0663 2.3504 15 1 3.2121 -3.4801 2.3045 16 6 1.8133 -2.6175 3.7597 17 7 2.6421 -1.4766 4.1568 18 6 2.3923 -0.8326 5.3142 19 8 1.4774 -1.1988 6.0295 20 6 3.1932 0.2692 5.6980 21 6 3.0549 0.8102 6.9338 22 6 2.6968 -0.0118 8.0308 23 6 2.3867 0.4182 9.3080 24 6 2.0962 -0.7204 10.0652 25 6 2.2303 -1.8018 9.2599 26 7 2.5948 -1.3849 8.0204 27 1 2.7602 -1.9589 7.2562 28 1 -0.3633 0.4443 -0.9267 29 1 -0.3633 -1.0246 0.0786 30 1 -0.3633 0.5804 0.8481 31 1 1.8933 -0.5139 -0.8901 32 1 1.6220 3.2733 0.4680 33 1 0.6809 -2.8952 -0.2079 34 1 2.3597 -3.5826 -0.1342 35 1 1.4136 -5.0067 1.6260 36 1 0.1298 -3.7760 2.0233 37 1 1.9677 -3.4395 4.4588 38 1 0.7635 -2.3247 3.7694 39 1 3.3707 -1.1847 3.5869 40 1 3.9146 0.6793 5.0066 41 1 3.2178 1.8675 7.0819 42 1 2.3712 1.4409 9.6548 43 1 1.8146 -0.7354 11.1078 44 1 2.0727 -2.8284 9.5558 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689522503.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:40 Heat of formation + Delta-G solvation = 87.257218 kcal Electronic energy + Delta-G solvation = -27363.441916 eV Core-core repulsion = 23593.109870 eV Total energy + Delta-G solvation = -3770.332046 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.160 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.30035 -41.76814 -40.38610 -39.29191 -37.02897 -35.68195 -34.72121 -33.29618 -31.87846 -30.80314 -30.07085 -28.63316 -26.34577 -25.18207 -23.78637 -23.43532 -21.84842 -21.29926 -21.09860 -20.73712 -19.56370 -19.10380 -18.28762 -17.66197 -17.62287 -17.12649 -17.00513 -16.05846 -15.96469 -15.38436 -15.21925 -15.10651 -15.01460 -14.81321 -14.72644 -14.62511 -14.27297 -13.94387 -13.60387 -13.56140 -13.28850 -13.19585 -13.12824 -13.02102 -12.93073 -12.85272 -12.46176 -12.29889 -12.20757 -11.80340 -11.62866 -11.10373 -10.77606 -10.64942 -10.05522 -9.91892 -9.77936 -9.71443 -8.50470 -0.48775 0.73073 1.02380 1.35711 1.52523 1.57575 1.62964 1.80911 1.89962 1.99326 2.34325 2.43160 2.62825 3.36472 3.40575 3.58766 3.72207 4.00630 4.05803 4.07272 4.08553 4.14426 4.26418 4.29911 4.33668 4.42649 4.44661 4.49196 4.60419 4.62859 4.69373 4.75796 4.82330 4.97364 4.99615 5.01949 5.03616 5.07365 5.30669 5.33756 5.35119 5.36523 5.48415 5.98367 6.14347 6.57669 6.63018 6.67766 6.85177 7.08148 7.29011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.078 4.078 3 C 0.006 3.994 4 N -0.641 5.641 5 Si 0.971 3.029 6 H -0.232 1.232 7 H -0.266 1.266 8 H -0.238 1.238 9 C 0.547 3.453 10 O -0.560 6.560 11 N -0.650 5.650 12 C 0.098 3.902 13 C -0.133 4.133 14 C 0.116 3.884 15 H 0.121 0.879 16 C 0.114 3.886 17 N -0.700 5.700 18 C 0.541 3.459 19 O -0.599 6.599 20 C -0.295 4.295 21 C 0.045 3.955 22 C -0.021 4.021 23 C -0.155 4.155 24 C -0.233 4.233 25 C 0.014 3.986 26 N -0.515 5.515 27 H 0.415 0.585 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.041 0.959 31 H 0.143 0.857 32 H 0.343 0.657 33 H 0.097 0.903 34 H 0.116 0.884 35 H 0.122 0.878 36 H 0.091 0.909 37 H 0.082 0.918 38 H 0.045 0.955 39 H 0.410 0.590 40 H 0.143 0.857 41 H 0.169 0.831 42 H 0.157 0.843 43 H 0.153 0.847 44 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.752 -6.338 -7.718 10.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.100 4.100 3 C -0.243 4.243 4 N -0.254 5.254 5 Si 0.787 3.213 6 H -0.155 1.155 7 H -0.190 1.190 8 H -0.161 1.161 9 C 0.337 3.663 10 O -0.438 6.438 11 N -0.386 5.386 12 C -0.024 4.024 13 C -0.171 4.171 14 C 0.013 3.987 15 H 0.138 0.862 16 C -0.011 4.011 17 N -0.352 5.352 18 C 0.335 3.665 19 O -0.485 6.485 20 C -0.317 4.317 21 C 0.024 3.976 22 C -0.132 4.132 23 C -0.181 4.181 24 C -0.256 4.256 25 C -0.124 4.124 26 N -0.111 5.111 27 H 0.257 0.743 28 H 0.095 0.905 29 H 0.092 0.908 30 H 0.060 0.940 31 H 0.161 0.839 32 H 0.160 0.840 33 H 0.115 0.885 34 H 0.134 0.866 35 H 0.141 0.859 36 H 0.110 0.890 37 H 0.100 0.900 38 H 0.064 0.936 39 H 0.250 0.750 40 H 0.161 0.839 41 H 0.186 0.814 42 H 0.174 0.826 43 H 0.171 0.829 44 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 2.291 -5.894 -6.926 9.379 hybrid contribution 0.583 0.703 -0.463 1.024 sum 2.874 -5.191 -7.389 9.477 Atomic orbital electron populations 1.21507 0.91012 1.02440 1.03078 1.20645 0.99151 0.92391 0.97814 1.30109 1.04254 0.95922 0.94038 1.68112 1.39176 1.05997 1.12071 0.85182 0.74061 0.81474 0.80582 1.15457 1.19036 1.16075 1.20183 0.77496 0.80392 0.88251 1.90586 1.46445 1.65540 1.41253 1.49936 1.66313 1.03454 1.18871 1.23334 1.01581 0.82933 0.94515 1.23447 0.98494 1.00421 0.94757 1.23279 1.01982 0.86703 0.86721 0.86162 1.21625 0.94689 0.88771 0.96027 1.46081 1.35038 1.31662 1.22445 1.17358 0.84916 0.82523 0.81675 1.90814 1.34447 1.68532 1.54720 1.21900 1.06256 1.03272 1.00283 1.21169 0.87710 0.98850 0.89831 1.18606 1.14672 0.83653 0.96238 1.21871 1.03781 1.00077 0.92367 1.21170 1.11198 0.92118 1.01134 1.22632 1.03786 1.01194 0.84810 1.42696 1.50109 1.06929 1.11325 0.74250 0.90495 0.90844 0.93968 0.83899 0.84006 0.88481 0.86638 0.85949 0.89049 0.90018 0.93638 0.75017 0.83940 0.81370 0.82577 0.82896 0.79369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.12 8.76 71.98 0.63 0.75 16 2 C -0.08 0.13 2.48 -12.28 -0.03 0.10 16 3 C 0.01 0.01 4.12 88.68 0.37 0.37 16 4 N -0.64 -3.45 12.60 24.11 0.30 -3.15 16 5 Si 0.97 -1.06 29.45 68.60 2.02 0.96 16 6 H -0.23 0.56 7.11 99.48 0.71 1.27 16 7 H -0.27 -0.67 7.11 99.48 0.71 0.04 16 8 H -0.24 0.21 7.11 99.48 0.71 0.92 16 9 C 0.55 1.12 7.05 87.66 0.62 1.74 16 10 O -0.56 -4.94 13.02 -3.05 -0.04 -4.98 16 11 N -0.65 2.66 3.57 -833.62 -2.97 -0.31 16 12 C 0.10 -1.20 8.39 83.18 0.70 -0.50 16 13 C -0.13 1.55 8.02 30.93 0.25 1.80 16 14 C 0.12 -0.72 4.12 41.79 0.17 -0.55 16 15 H 0.12 -1.16 8.14 -2.39 -0.02 -1.18 16 16 C 0.11 0.17 5.61 86.38 0.48 0.65 16 17 N -0.70 -4.12 3.94 -472.23 -1.86 -5.98 16 18 C 0.54 6.12 6.32 85.05 0.54 6.66 16 19 O -0.60 -10.23 12.70 -4.59 -0.06 -10.29 16 20 C -0.30 -2.54 9.72 22.47 0.22 -2.32 16 21 C 0.04 0.35 9.76 22.51 0.22 0.57 16 22 C -0.02 -0.22 5.95 39.08 0.23 0.01 16 23 C -0.16 -1.42 10.86 22.66 0.25 -1.17 16 24 C -0.23 -1.87 10.81 22.01 0.24 -1.64 16 25 C 0.01 0.10 11.90 83.45 0.99 1.10 16 26 N -0.52 -5.21 4.50 -187.33 -0.84 -6.05 16 27 H 0.42 4.00 6.14 -92.71 -0.57 3.43 16 28 H 0.08 -0.20 8.14 -2.39 -0.02 -0.22 16 29 H 0.07 -0.33 7.22 -2.39 -0.02 -0.35 16 30 H 0.04 0.27 7.62 -2.39 -0.02 0.25 16 31 H 0.14 -1.32 7.85 -2.38 -0.02 -1.34 16 32 H 0.34 0.95 8.23 -92.71 -0.76 0.19 16 33 H 0.10 -1.37 7.25 -2.39 -0.02 -1.39 16 34 H 0.12 -1.89 8.14 -2.39 -0.02 -1.91 16 35 H 0.12 -1.96 8.14 -2.39 -0.02 -1.98 16 36 H 0.09 -0.84 8.06 -2.39 -0.02 -0.86 16 37 H 0.08 -0.02 8.14 -2.38 -0.02 -0.04 16 38 H 0.05 0.32 8.04 -2.39 -0.02 0.31 16 39 H 0.41 2.11 6.33 -92.71 -0.59 1.52 16 40 H 0.14 0.79 8.06 -2.91 -0.02 0.76 16 41 H 0.17 0.25 8.06 -2.91 -0.02 0.23 16 42 H 0.16 0.71 8.06 -2.91 -0.02 0.68 16 43 H 0.15 0.59 8.06 -2.91 -0.02 0.57 16 44 H 0.19 0.14 8.06 -2.91 -0.02 0.11 16 Total: 0.00 -23.53 362.70 2.30 -21.23 By element: Atomic # 1 Polarization: 1.14 SS G_CDS: -0.12 Total: 1.01 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: 5.87 Total: 7.56 kcal Atomic # 7 Polarization: -10.12 SS G_CDS: -5.37 Total: -15.49 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: -0.10 Total: -15.27 kcal Atomic # 14 Polarization: -1.06 SS G_CDS: 2.02 Total: 0.96 kcal Total: -23.53 2.30 -21.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689522503.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.490 kcal (2) G-P(sol) polarization free energy of solvation -23.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds