Wall clock time and date at job start Tue Mar 31 2020 11:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50698 * 109.47575 * 2 1 4 4 N 1.27945 * 119.99737 * 264.99977 * 3 2 1 5 5 Si 1.86794 * 120.00186 * 84.99568 * 3 2 1 6 6 H 1.48503 * 109.47417 * 60.00433 * 5 3 2 7 7 H 1.48497 * 109.47463 * 180.02562 * 5 3 2 8 8 H 1.48500 * 109.47175 * 300.00315 * 5 3 2 9 9 C 1.50701 * 109.47165 * 239.99657 * 2 1 3 10 10 O 1.21282 * 120.00208 * 103.33170 * 9 2 1 11 11 N 1.34778 * 119.99960 * 283.33144 * 9 2 1 12 12 C 1.47580 * 134.49262 * 1.34529 * 11 9 2 13 13 C 1.53945 * 86.11486 * 155.36058 * 12 11 9 14 14 C 1.47580 * 134.49171 * 181.34095 * 11 9 2 15 15 H 1.09009 * 113.86604 * 90.32669 * 14 11 9 16 16 C 1.52996 * 113.77046 * 318.94701 * 14 11 9 17 17 N 1.46503 * 109.47436 * 77.72837 * 16 14 11 18 18 C 1.34776 * 119.99904 * 176.52894 * 17 16 14 19 19 O 1.21778 * 120.00285 * 0.02562 * 18 17 16 20 20 C 1.41513 * 119.99748 * 179.97438 * 18 17 16 21 21 C 1.35615 * 119.99870 * 188.06144 * 20 18 17 22 22 C 1.41670 * 120.00510 * 32.39649 * 21 20 18 23 23 C 1.38278 * 126.25999 * 187.50000 * 22 21 20 24 24 C 1.39790 * 107.07424 * 180.21963 * 23 22 21 25 25 C 1.35501 * 107.91450 * 359.59974 * 24 23 22 26 26 N 1.35760 * 108.90559 * 0.40881 * 25 24 23 27 27 H 0.96997 * 125.68836 * 179.73108 * 26 25 24 28 28 H 1.08999 * 109.46867 * 311.97628 * 1 2 3 29 29 H 1.09001 * 109.46622 * 71.97691 * 1 2 3 30 30 H 1.08997 * 109.47253 * 191.97881 * 1 2 3 31 31 H 1.09002 * 109.46769 * 120.00125 * 2 1 3 32 32 H 0.97001 * 119.99533 * 179.97438 * 4 3 2 33 33 H 1.08993 * 113.77279 * 41.05645 * 12 11 9 34 34 H 1.09003 * 113.86883 * 269.66997 * 12 11 9 35 35 H 1.08999 * 113.73848 * 269.25678 * 13 12 11 36 36 H 1.09004 * 113.84024 * 137.96627 * 13 12 11 37 37 H 1.08994 * 109.46889 * 317.72514 * 16 14 11 38 38 H 1.09003 * 109.47205 * 197.72854 * 16 14 11 39 39 H 0.96995 * 119.99610 * 356.52450 * 17 16 14 40 40 H 1.08005 * 120.00075 * 8.05573 * 20 18 17 41 41 H 1.08005 * 120.00015 * 212.39846 * 21 20 18 42 42 H 1.07996 * 126.46682 * 359.95420 * 23 22 21 43 43 H 1.08001 * 126.04472 * 179.75679 * 24 23 22 44 44 H 1.07995 * 125.54736 * 180.18217 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0325 1.4208 0.0000 4 7 2.3368 1.9916 -1.1039 5 14 2.2108 2.3484 1.6115 6 1 3.1660 1.6302 2.4930 7 1 2.7193 3.7171 1.3412 8 1 0.8884 2.4355 2.2815 9 6 2.0324 -0.7105 -1.2304 10 8 2.4629 -0.0710 -2.1667 11 7 2.0032 -2.0566 -1.2904 12 6 1.5400 -3.1226 -0.3810 13 6 1.3797 -3.9868 -1.6449 14 6 2.4217 -3.0566 -2.2918 15 1 3.4501 -3.3977 -2.1715 16 6 2.0879 -2.6638 -3.7323 17 7 3.0599 -1.6757 -4.2069 18 6 3.0054 -1.2340 -5.4791 19 8 2.1479 -1.6557 -6.2339 20 6 3.9440 -0.2791 -5.9373 21 6 3.7932 0.2871 -7.1603 22 6 2.4954 0.5068 -7.6842 23 6 2.1914 0.9357 -8.9631 24 6 0.7987 1.0209 -9.0473 25 6 0.2850 0.6436 -7.8516 26 7 1.3059 0.3319 -7.0129 27 1 1.2130 0.0355 -6.0940 28 1 -0.3633 0.6873 0.7640 29 1 -0.3632 0.3180 -0.9773 30 1 -0.3633 -1.0052 0.2133 31 1 1.8933 -0.5139 0.8900 32 1 2.6598 2.9063 -1.1038 33 1 0.5982 -2.8956 0.1184 34 1 2.3080 -3.4833 0.3032 35 1 0.3909 -3.9211 -2.0988 36 1 1.7238 -5.0138 -1.5230 37 1 1.0865 -2.2351 -3.7692 38 1 2.1283 -3.5478 -4.3687 39 1 3.7426 -1.3395 -3.6056 40 1 4.7804 -0.0013 -5.3130 41 1 4.6626 0.5705 -7.7351 42 1 2.8971 1.1659 -9.7476 43 1 0.2321 1.3301 -9.9133 44 1 -0.7656 0.6015 -7.6047 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689522505.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:53 Heat of formation + Delta-G solvation = 88.415872 kcal Electronic energy + Delta-G solvation = -27407.783377 eV Core-core repulsion = 23637.501574 eV Total energy + Delta-G solvation = -3770.281803 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.160 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.00695 -41.60062 -40.12983 -39.15812 -36.57584 -35.50757 -34.43217 -33.51835 -31.55809 -30.77304 -29.99677 -28.51668 -26.09935 -25.22229 -23.69265 -23.44965 -21.57031 -21.24541 -21.00824 -20.45492 -19.51482 -18.96652 -18.54260 -17.34192 -17.26785 -17.00224 -16.58464 -15.97305 -15.80956 -15.59426 -15.06891 -14.99378 -14.83754 -14.67876 -14.56504 -14.38847 -14.00387 -13.80722 -13.61603 -13.55768 -13.48110 -13.15336 -13.10011 -12.93796 -12.82916 -12.66356 -12.58036 -12.42108 -12.35257 -12.08053 -11.41852 -10.80624 -10.66083 -10.46315 -9.84376 -9.71537 -9.49094 -9.45447 -8.21315 -0.21944 0.81035 0.95824 1.28701 1.56757 1.69294 1.82050 1.83214 1.93776 2.29610 2.55126 2.71306 2.83465 3.22459 3.28951 3.50225 3.67699 3.84246 3.94865 4.03680 4.08547 4.15384 4.22737 4.28288 4.30853 4.37579 4.50144 4.53630 4.57854 4.66799 4.68605 4.69733 4.80726 4.82111 4.92110 4.93137 5.06218 5.11428 5.23615 5.29845 5.60496 5.62130 5.66104 6.26575 6.44697 6.68181 6.79782 6.94056 6.94134 7.35063 7.53177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.074 4.074 3 C -0.019 4.019 4 N -0.571 5.571 5 Si 0.933 3.067 6 H -0.238 1.238 7 H -0.247 1.247 8 H -0.235 1.235 9 C 0.535 3.465 10 O -0.484 6.484 11 N -0.649 5.649 12 C 0.098 3.902 13 C -0.143 4.143 14 C 0.121 3.879 15 H 0.099 0.901 16 C 0.123 3.877 17 N -0.709 5.709 18 C 0.549 3.451 19 O -0.563 6.563 20 C -0.288 4.288 21 C 0.050 3.950 22 C 0.003 3.997 23 C -0.144 4.144 24 C -0.217 4.217 25 C 0.022 3.978 26 N -0.508 5.508 27 H 0.418 0.582 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.105 0.895 32 H 0.331 0.669 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.097 0.903 36 H 0.091 0.909 37 H 0.067 0.933 38 H 0.080 0.920 39 H 0.405 0.595 40 H 0.133 0.867 41 H 0.145 0.855 42 H 0.141 0.859 43 H 0.138 0.862 44 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.399 -2.491 7.783 8.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.096 4.096 3 C -0.270 4.270 4 N -0.183 5.183 5 Si 0.748 3.252 6 H -0.161 1.161 7 H -0.170 1.170 8 H -0.158 1.158 9 C 0.322 3.678 10 O -0.354 6.354 11 N -0.389 5.389 12 C -0.024 4.024 13 C -0.181 4.181 14 C 0.018 3.982 15 H 0.117 0.883 16 C -0.002 4.002 17 N -0.360 5.360 18 C 0.342 3.658 19 O -0.446 6.446 20 C -0.310 4.310 21 C 0.029 3.971 22 C -0.108 4.108 23 C -0.169 4.169 24 C -0.241 4.241 25 C -0.117 4.117 26 N -0.103 5.103 27 H 0.261 0.739 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.123 0.877 32 H 0.148 0.852 33 H 0.104 0.896 34 H 0.106 0.894 35 H 0.115 0.885 36 H 0.109 0.891 37 H 0.085 0.915 38 H 0.098 0.902 39 H 0.241 0.759 40 H 0.151 0.849 41 H 0.163 0.837 42 H 0.159 0.841 43 H 0.155 0.845 44 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -0.659 -2.082 6.730 7.075 hybrid contribution 0.525 0.383 1.233 1.393 sum -0.135 -1.699 7.963 8.143 Atomic orbital electron populations 1.21653 0.91120 1.03053 1.03575 1.20523 0.98307 0.93008 0.97738 1.29888 0.95984 0.98729 1.02363 1.68504 1.05028 1.14259 1.30520 0.85762 0.82900 0.79854 0.76643 1.16060 1.16993 1.15794 1.20139 0.78700 0.79815 0.89118 1.90787 1.44122 1.63510 1.37015 1.50385 1.63988 1.03563 1.20915 1.23184 1.00204 0.84856 0.94194 1.23542 1.00078 0.98736 0.95772 1.23079 0.99605 0.86364 0.89161 0.88319 1.21413 0.93363 0.92773 0.92659 1.45825 1.34260 1.43954 1.11994 1.17145 0.84135 0.83059 0.81452 1.90851 1.37910 1.60829 1.55003 1.21756 1.05488 1.04917 0.98874 1.20818 0.94229 0.89679 0.92339 1.18222 0.86474 1.12050 0.94090 1.21508 0.96104 1.04538 0.94779 1.20830 0.94557 1.10592 0.98131 1.22103 0.93532 1.04623 0.91452 1.42626 1.05221 1.48423 1.14030 0.73913 0.90983 0.91588 0.91271 0.87689 0.85162 0.89625 0.89416 0.88463 0.89093 0.91457 0.90196 0.75893 0.84916 0.83722 0.84142 0.84460 0.81989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.32 9.23 37.16 0.34 0.66 16 2 C -0.07 0.09 2.39 -92.92 -0.22 -0.13 16 3 C -0.02 0.00 4.81 -13.90 -0.07 -0.06 16 4 N -0.57 -1.26 11.12 56.23 0.63 -0.64 16 5 Si 0.93 -1.57 29.12 -169.99 -4.95 -6.52 16 6 H -0.24 0.32 7.11 56.52 0.40 0.73 16 7 H -0.25 0.13 7.11 56.52 0.40 0.53 16 8 H -0.24 0.39 7.11 56.52 0.40 0.79 16 9 C 0.53 0.50 7.11 -10.98 -0.08 0.42 16 10 O -0.48 -2.01 12.22 5.56 0.07 -1.94 16 11 N -0.65 0.99 3.49 -171.22 -0.60 0.39 16 12 C 0.10 -0.46 8.61 -2.98 -0.03 -0.49 16 13 C -0.14 0.64 7.86 -25.81 -0.20 0.43 16 14 C 0.12 -0.25 4.29 -66.87 -0.29 -0.54 16 15 H 0.10 -0.28 8.14 -51.92 -0.42 -0.70 16 16 C 0.12 0.09 5.33 -4.04 -0.02 0.07 16 17 N -0.71 -1.65 4.32 -63.26 -0.27 -1.92 16 18 C 0.55 2.54 6.33 -15.01 -0.10 2.44 16 19 O -0.56 -4.18 12.73 5.12 0.07 -4.11 16 20 C -0.29 -0.95 9.72 -39.27 -0.38 -1.33 16 21 C 0.05 0.16 9.76 -39.21 -0.38 -0.22 16 22 C 0.00 0.02 5.94 -83.91 -0.50 -0.48 16 23 C -0.14 -0.64 10.86 -38.99 -0.42 -1.06 16 24 C -0.22 -0.93 10.81 -39.98 -0.43 -1.36 16 25 C 0.02 0.09 11.90 -16.79 -0.20 -0.11 16 26 N -0.51 -2.75 4.50 -10.56 -0.05 -2.80 16 27 H 0.42 2.42 6.17 -40.82 -0.25 2.17 16 28 H 0.07 -0.24 7.69 -51.93 -0.40 -0.64 16 29 H 0.07 -0.02 8.09 -51.93 -0.42 -0.44 16 30 H 0.07 -0.27 7.10 -51.93 -0.37 -0.64 16 31 H 0.11 -0.40 7.85 -51.93 -0.41 -0.81 16 32 H 0.33 0.28 8.23 -40.82 -0.34 -0.06 16 33 H 0.09 -0.49 7.10 -51.93 -0.37 -0.86 16 34 H 0.09 -0.51 8.14 -51.93 -0.42 -0.94 16 35 H 0.10 -0.39 8.10 -51.93 -0.42 -0.82 16 36 H 0.09 -0.52 8.14 -51.93 -0.42 -0.94 16 37 H 0.07 0.16 8.14 -51.93 -0.42 -0.26 16 38 H 0.08 0.07 8.14 -51.93 -0.42 -0.35 16 39 H 0.41 0.80 7.24 -40.82 -0.30 0.50 16 40 H 0.13 0.18 8.06 -52.48 -0.42 -0.24 16 41 H 0.15 0.01 8.06 -52.48 -0.42 -0.42 16 42 H 0.14 0.30 8.06 -52.49 -0.42 -0.12 16 43 H 0.14 0.32 8.06 -52.49 -0.42 -0.10 16 44 H 0.16 0.23 8.06 -52.49 -0.42 -0.19 16 LS Contribution 362.31 15.07 5.46 5.46 Total: 0.00 -8.73 362.31 -8.92 -17.65 By element: Atomic # 1 Polarization: 2.48 SS G_CDS: -6.29 Total: -3.81 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: -2.97 Total: -1.75 kcal Atomic # 7 Polarization: -4.67 SS G_CDS: -0.29 Total: -4.97 kcal Atomic # 8 Polarization: -6.18 SS G_CDS: 0.13 Total: -6.05 kcal Atomic # 14 Polarization: -1.57 SS G_CDS: -4.95 Total: -6.52 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -8.73 -8.92 -17.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689522505.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.063 kcal (2) G-P(sol) polarization free energy of solvation -8.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds