Wall clock time and date at job start Tue Mar 31 2020 11:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50698 * 109.47575 * 2 1 4 4 N 1.27945 * 119.99737 * 264.99977 * 3 2 1 5 5 Si 1.86794 * 120.00186 * 84.99568 * 3 2 1 6 6 H 1.48503 * 109.47417 * 60.00433 * 5 3 2 7 7 H 1.48497 * 109.47463 * 180.02562 * 5 3 2 8 8 H 1.48500 * 109.47175 * 300.00315 * 5 3 2 9 9 C 1.50701 * 109.47165 * 239.99657 * 2 1 3 10 10 O 1.21282 * 120.00208 * 103.33170 * 9 2 1 11 11 N 1.34778 * 119.99960 * 283.33144 * 9 2 1 12 12 C 1.47580 * 134.49262 * 1.34529 * 11 9 2 13 13 C 1.53945 * 86.11486 * 155.36058 * 12 11 9 14 14 C 1.47580 * 134.49171 * 181.34095 * 11 9 2 15 15 H 1.09009 * 113.86604 * 90.32669 * 14 11 9 16 16 C 1.52996 * 113.77046 * 318.94701 * 14 11 9 17 17 N 1.46503 * 109.47436 * 77.72837 * 16 14 11 18 18 C 1.34776 * 119.99904 * 176.52894 * 17 16 14 19 19 O 1.21778 * 120.00285 * 0.02562 * 18 17 16 20 20 C 1.41513 * 119.99748 * 179.97438 * 18 17 16 21 21 C 1.35615 * 119.99870 * 188.06144 * 20 18 17 22 22 C 1.41670 * 120.00510 * 32.39649 * 21 20 18 23 23 C 1.38278 * 126.25999 * 187.50000 * 22 21 20 24 24 C 1.39790 * 107.07424 * 180.21963 * 23 22 21 25 25 C 1.35501 * 107.91450 * 359.59974 * 24 23 22 26 26 N 1.35760 * 108.90559 * 0.40881 * 25 24 23 27 27 H 0.96997 * 125.68836 * 179.73108 * 26 25 24 28 28 H 1.08999 * 109.46867 * 311.97628 * 1 2 3 29 29 H 1.09001 * 109.46622 * 71.97691 * 1 2 3 30 30 H 1.08997 * 109.47253 * 191.97881 * 1 2 3 31 31 H 1.09002 * 109.46769 * 120.00125 * 2 1 3 32 32 H 0.97001 * 119.99533 * 179.97438 * 4 3 2 33 33 H 1.08993 * 113.77279 * 41.05645 * 12 11 9 34 34 H 1.09003 * 113.86883 * 269.66997 * 12 11 9 35 35 H 1.08999 * 113.73848 * 269.25678 * 13 12 11 36 36 H 1.09004 * 113.84024 * 137.96627 * 13 12 11 37 37 H 1.08994 * 109.46889 * 317.72514 * 16 14 11 38 38 H 1.09003 * 109.47205 * 197.72854 * 16 14 11 39 39 H 0.96995 * 119.99610 * 356.52450 * 17 16 14 40 40 H 1.08005 * 120.00075 * 8.05573 * 20 18 17 41 41 H 1.08005 * 120.00015 * 212.39846 * 21 20 18 42 42 H 1.07996 * 126.46682 * 359.95420 * 23 22 21 43 43 H 1.08001 * 126.04472 * 179.75679 * 24 23 22 44 44 H 1.07995 * 125.54736 * 180.18217 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0325 1.4208 0.0000 4 7 2.3368 1.9916 -1.1039 5 14 2.2108 2.3484 1.6115 6 1 3.1660 1.6302 2.4930 7 1 2.7193 3.7171 1.3412 8 1 0.8884 2.4355 2.2815 9 6 2.0324 -0.7105 -1.2304 10 8 2.4629 -0.0710 -2.1667 11 7 2.0032 -2.0566 -1.2904 12 6 1.5400 -3.1226 -0.3810 13 6 1.3797 -3.9868 -1.6449 14 6 2.4217 -3.0566 -2.2918 15 1 3.4501 -3.3977 -2.1715 16 6 2.0879 -2.6638 -3.7323 17 7 3.0599 -1.6757 -4.2069 18 6 3.0054 -1.2340 -5.4791 19 8 2.1479 -1.6557 -6.2339 20 6 3.9440 -0.2791 -5.9373 21 6 3.7932 0.2871 -7.1603 22 6 2.4954 0.5068 -7.6842 23 6 2.1914 0.9357 -8.9631 24 6 0.7987 1.0209 -9.0473 25 6 0.2850 0.6436 -7.8516 26 7 1.3059 0.3319 -7.0129 27 1 1.2130 0.0355 -6.0940 28 1 -0.3633 0.6873 0.7640 29 1 -0.3632 0.3180 -0.9773 30 1 -0.3633 -1.0052 0.2133 31 1 1.8933 -0.5139 0.8900 32 1 2.6598 2.9063 -1.1038 33 1 0.5982 -2.8956 0.1184 34 1 2.3080 -3.4833 0.3032 35 1 0.3909 -3.9211 -2.0988 36 1 1.7238 -5.0138 -1.5230 37 1 1.0865 -2.2351 -3.7692 38 1 2.1283 -3.5478 -4.3687 39 1 3.7426 -1.3395 -3.6056 40 1 4.7804 -0.0013 -5.3130 41 1 4.6626 0.5705 -7.7351 42 1 2.8971 1.1659 -9.7476 43 1 0.2321 1.3301 -9.9133 44 1 -0.7656 0.6015 -7.6047 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689522505.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:52 Heat of formation + Delta-G solvation = 90.084191 kcal Electronic energy + Delta-G solvation = -27407.711034 eV Core-core repulsion = 23637.501574 eV Total energy + Delta-G solvation = -3770.209459 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.160 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.28503 -41.52896 -40.40672 -39.08710 -36.57895 -35.70348 -34.71808 -33.46217 -31.87649 -30.75220 -29.99376 -28.66077 -25.96233 -25.26464 -23.71141 -23.37681 -21.85889 -21.30667 -21.17905 -20.69008 -19.48165 -19.08900 -18.52283 -17.59340 -17.24307 -17.03653 -16.52374 -16.08557 -15.91171 -15.52641 -15.26085 -15.08798 -15.02483 -14.76822 -14.61956 -14.38799 -14.16139 -13.82756 -13.70439 -13.56962 -13.28489 -13.21421 -13.10048 -12.97922 -12.91305 -12.66181 -12.41037 -12.27603 -12.19087 -11.90595 -11.38249 -11.11633 -10.77512 -10.63583 -10.11208 -9.78394 -9.58883 -9.45725 -8.51160 -0.48615 0.88889 1.06239 1.42278 1.60972 1.69545 1.81241 1.87111 1.93920 1.99375 2.38614 2.41566 2.55839 3.35698 3.49763 3.70798 3.76452 4.01495 4.06362 4.07285 4.13949 4.23363 4.23810 4.25543 4.36368 4.42027 4.45343 4.50174 4.60031 4.66911 4.67674 4.75105 4.86991 4.99318 5.01049 5.03394 5.05920 5.11035 5.26174 5.32610 5.32994 5.35378 5.45392 5.98691 6.14708 6.54554 6.58313 6.81083 6.99637 7.22238 7.40789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.079 4.079 3 C -0.022 4.022 4 N -0.614 5.614 5 Si 0.980 3.020 6 H -0.235 1.235 7 H -0.271 1.271 8 H -0.228 1.228 9 C 0.523 3.477 10 O -0.527 6.527 11 N -0.651 5.651 12 C 0.102 3.898 13 C -0.133 4.133 14 C 0.118 3.882 15 H 0.111 0.889 16 C 0.125 3.875 17 N -0.700 5.700 18 C 0.540 3.460 19 O -0.597 6.597 20 C -0.298 4.298 21 C 0.047 3.953 22 C -0.021 4.021 23 C -0.154 4.154 24 C -0.229 4.229 25 C 0.007 3.993 26 N -0.517 5.517 27 H 0.412 0.588 28 H 0.084 0.916 29 H 0.037 0.963 30 H 0.090 0.910 31 H 0.137 0.863 32 H 0.330 0.670 33 H 0.102 0.898 34 H 0.108 0.892 35 H 0.091 0.909 36 H 0.111 0.889 37 H 0.045 0.955 38 H 0.075 0.925 39 H 0.407 0.593 40 H 0.150 0.850 41 H 0.176 0.824 42 H 0.161 0.839 43 H 0.155 0.845 44 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.315 -3.482 9.654 10.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.100 4.100 3 C -0.270 4.270 4 N -0.226 5.226 5 Si 0.795 3.205 6 H -0.158 1.158 7 H -0.195 1.195 8 H -0.151 1.151 9 C 0.312 3.688 10 O -0.401 6.401 11 N -0.390 5.390 12 C -0.020 4.020 13 C -0.171 4.171 14 C 0.014 3.986 15 H 0.128 0.872 16 C 0.000 4.000 17 N -0.349 5.349 18 C 0.334 3.666 19 O -0.483 6.483 20 C -0.319 4.319 21 C 0.026 3.974 22 C -0.132 4.132 23 C -0.179 4.179 24 C -0.253 4.253 25 C -0.131 4.131 26 N -0.112 5.112 27 H 0.254 0.746 28 H 0.103 0.897 29 H 0.057 0.943 30 H 0.108 0.892 31 H 0.155 0.845 32 H 0.147 0.853 33 H 0.120 0.880 34 H 0.126 0.874 35 H 0.110 0.890 36 H 0.129 0.871 37 H 0.063 0.937 38 H 0.093 0.907 39 H 0.244 0.756 40 H 0.168 0.832 41 H 0.193 0.807 42 H 0.179 0.821 43 H 0.172 0.828 44 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -0.583 -3.122 8.639 9.204 hybrid contribution 0.475 0.653 0.651 1.037 sum -0.108 -2.469 9.290 9.613 Atomic orbital electron populations 1.21647 0.90309 1.04617 1.02419 1.20736 0.98926 0.92403 0.97982 1.30472 0.94223 0.99360 1.02969 1.68600 1.07132 1.14660 1.32242 0.85111 0.82836 0.77862 0.74726 1.15772 1.19487 1.15090 1.20615 0.78344 0.80558 0.89328 1.90764 1.46143 1.64691 1.38510 1.50510 1.63259 1.03378 1.21823 1.23446 1.01538 0.82978 0.94001 1.23515 0.98920 0.99380 0.95290 1.23214 1.01061 0.87052 0.87246 0.87180 1.21442 0.91956 0.91844 0.94757 1.45823 1.34162 1.43647 1.11277 1.17446 0.83973 0.83302 0.81857 1.90820 1.39343 1.62170 1.56011 1.21935 1.05784 1.04892 0.99319 1.21226 0.94544 0.89192 0.92405 1.18706 0.87165 1.12603 0.94678 1.21880 0.96743 1.04257 0.95047 1.21162 0.94873 1.10576 0.98669 1.22590 0.94479 1.04488 0.91567 1.42742 1.05844 1.48687 1.13957 0.74618 0.89674 0.94349 0.89156 0.84494 0.85290 0.88006 0.87356 0.89024 0.87060 0.93702 0.90665 0.75635 0.83239 0.80693 0.82115 0.82767 0.79991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.69 9.23 71.98 0.66 1.35 16 2 C -0.08 0.23 2.39 -12.29 -0.03 0.21 16 3 C -0.02 0.00 4.81 88.67 0.43 0.42 16 4 N -0.61 -3.97 11.12 24.11 0.27 -3.70 16 5 Si 0.98 -3.89 29.12 68.60 2.00 -1.90 16 6 H -0.24 1.03 7.11 99.48 0.71 1.73 16 7 H -0.27 0.08 7.11 99.48 0.71 0.79 16 8 H -0.23 1.15 7.11 99.48 0.71 1.86 16 9 C 0.52 1.33 7.11 87.66 0.62 1.95 16 10 O -0.53 -5.48 12.22 -3.04 -0.04 -5.52 16 11 N -0.65 2.19 3.49 -814.01 -2.84 -0.66 16 12 C 0.10 -1.17 8.61 86.48 0.74 -0.42 16 13 C -0.13 1.34 7.86 31.25 0.25 1.59 16 14 C 0.12 -0.49 4.29 45.09 0.19 -0.29 16 15 H 0.11 -0.68 8.14 -2.38 -0.02 -0.70 16 16 C 0.12 0.41 5.33 86.38 0.46 0.87 16 17 N -0.70 -4.71 4.32 -472.22 -2.04 -6.76 16 18 C 0.54 6.26 6.33 85.05 0.54 6.80 16 19 O -0.60 -10.52 12.73 -4.60 -0.06 -10.58 16 20 C -0.30 -2.43 9.72 22.47 0.22 -2.21 16 21 C 0.05 0.35 9.76 22.51 0.22 0.57 16 22 C -0.02 -0.24 5.94 39.08 0.23 -0.01 16 23 C -0.15 -1.50 10.86 22.65 0.25 -1.25 16 24 C -0.23 -2.16 10.81 22.01 0.24 -1.92 16 25 C 0.01 0.07 11.90 83.45 0.99 1.06 16 26 N -0.52 -6.81 4.50 -187.34 -0.84 -7.65 16 27 H 0.41 6.09 6.17 -92.71 -0.57 5.52 16 28 H 0.08 -0.66 7.69 -2.39 -0.02 -0.68 16 29 H 0.04 0.03 8.09 -2.39 -0.02 0.01 16 30 H 0.09 -0.87 7.10 -2.39 -0.02 -0.89 16 31 H 0.14 -1.35 7.85 -2.39 -0.02 -1.37 16 32 H 0.33 1.39 8.23 -92.71 -0.76 0.62 16 33 H 0.10 -1.46 7.10 -2.39 -0.02 -1.48 16 34 H 0.11 -1.61 8.14 -2.39 -0.02 -1.63 16 35 H 0.09 -0.78 8.10 -2.39 -0.02 -0.80 16 36 H 0.11 -1.51 8.14 -2.39 -0.02 -1.53 16 37 H 0.04 0.35 8.14 -2.39 -0.02 0.33 16 38 H 0.08 0.29 8.14 -2.39 -0.02 0.27 16 39 H 0.41 2.37 7.24 -92.71 -0.67 1.70 16 40 H 0.15 0.58 8.06 -2.91 -0.02 0.55 16 41 H 0.18 0.00 8.06 -2.91 -0.02 -0.02 16 42 H 0.16 0.69 8.06 -2.91 -0.02 0.66 16 43 H 0.15 0.76 8.06 -2.91 -0.02 0.73 16 44 H 0.18 0.77 8.06 -2.91 -0.02 0.74 16 Total: 0.00 -23.88 362.31 2.25 -21.63 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -0.21 Total: 6.42 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: 6.01 Total: 8.71 kcal Atomic # 7 Polarization: -13.31 SS G_CDS: -5.46 Total: -18.76 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: -0.10 Total: -16.10 kcal Atomic # 14 Polarization: -3.89 SS G_CDS: 2.00 Total: -1.90 kcal Total: -23.88 2.25 -21.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689522505.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.716 kcal (2) G-P(sol) polarization free energy of solvation -23.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds