Wall clock time and date at job start Tue Mar 31 2020 11:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47395 * 2 1 4 4 C 1.50707 * 109.47048 * 119.99762 * 2 1 3 5 5 H 1.07997 * 119.99841 * 120.00666 * 4 2 1 6 6 C 1.37877 * 119.99780 * 300.00003 * 4 2 1 7 7 N 1.31510 * 119.99972 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99698 * 180.02562 * 6 4 2 9 9 H 1.48508 * 109.47309 * 60.00201 * 8 6 4 10 10 H 1.48505 * 109.47032 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47300 * 300.00124 * 8 6 4 12 12 N 1.46504 * 109.47445 * 239.99618 * 2 1 3 13 13 C 1.34779 * 119.99806 * 85.00133 * 12 2 1 14 14 O 1.21584 * 119.99910 * 0.02562 * 13 12 2 15 15 N 1.34768 * 119.99894 * 180.02562 * 13 12 2 16 16 C 1.39950 * 120.00332 * 184.50273 * 15 13 12 17 17 C 1.38885 * 120.06663 * 325.27317 * 16 15 13 18 18 C 1.38094 * 119.93010 * 180.29455 * 17 16 15 19 19 C 1.38307 * 120.06996 * 359.68306 * 18 17 16 20 20 C 1.38255 * 120.13567 * 0.02562 * 19 18 17 21 21 C 1.38135 * 120.07491 * 0.02562 * 20 19 18 22 22 C 1.50701 * 120.03909 * 180.02562 * 21 20 19 23 23 H 1.08996 * 110.21976 * 219.52256 * 22 21 20 24 24 C 1.54488 * 110.31754 * 97.54603 * 22 21 20 25 25 C 1.54781 * 101.69162 * 215.35381 * 24 22 21 26 26 C 1.51285 * 104.11993 * 25.09940 * 25 24 22 27 27 O 1.21282 * 124.93927 * 163.67192 * 26 25 24 28 28 N 1.34417 * 110.11596 * 343.41118 * 26 25 24 29 29 H 1.08997 * 109.47126 * 299.99834 * 1 2 3 30 30 H 1.09000 * 109.46848 * 60.00404 * 1 2 3 31 31 H 1.09005 * 109.46605 * 180.02562 * 1 2 3 32 32 H 0.97002 * 119.99769 * 180.02562 * 7 6 4 33 33 H 0.96994 * 119.99804 * 264.99864 * 12 2 1 34 34 H 0.97001 * 120.00487 * 4.50196 * 15 13 12 35 35 H 1.08008 * 120.03639 * 0.02562 * 17 16 15 36 36 H 1.08000 * 119.96893 * 179.70287 * 18 17 16 37 37 H 1.07997 * 119.92887 * 180.02562 * 19 18 17 38 38 H 1.08002 * 119.96591 * 180.02562 * 20 19 18 39 39 H 1.08996 * 110.96827 * 333.66831 * 24 22 21 40 40 H 1.08998 * 110.96642 * 97.38948 * 24 22 21 41 41 H 1.09000 * 110.61865 * 266.40256 * 25 24 22 42 42 H 1.08998 * 110.42716 * 143.70823 * 25 24 22 43 43 H 0.97003 * 124.34364 * 179.80180 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6533 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9427 0.8297 2.6033 8 14 2.3224 -1.1194 4.0080 9 1 3.8075 -1.1188 4.0078 10 1 1.8278 -0.4190 5.2205 11 1 1.8280 -2.5196 4.0083 12 7 2.0184 -0.6907 -1.1961 13 6 2.1471 -0.0184 -2.3571 14 8 1.8584 1.1614 -2.4116 15 7 2.5960 -0.6538 -3.4576 16 6 2.8194 0.0640 -4.6380 17 6 1.9960 1.1323 -4.9692 18 6 2.2153 1.8348 -6.1377 19 6 3.2576 1.4797 -6.9746 20 6 4.0826 0.4205 -6.6447 21 6 3.8679 -0.2869 -5.4778 22 6 4.7681 -1.4410 -5.1187 23 1 4.1843 -2.2540 -4.6873 24 6 5.8594 -0.9815 -4.1265 25 6 7.0713 -1.8324 -4.5770 26 6 6.7864 -2.1398 -6.0307 27 8 7.6064 -2.5404 -6.8295 28 7 5.4912 -1.9097 -6.3067 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 0.7086 1.1614 3.4843 33 1 2.2491 -1.6318 -1.1525 34 1 2.7642 -1.6088 -3.4316 35 1 1.1824 1.4107 -4.3156 36 1 1.5725 2.6627 -6.3982 37 1 3.4272 2.0309 -7.8877 38 1 4.8959 0.1458 -7.3001 39 1 6.0634 0.0835 -4.2368 40 1 5.5784 -1.2185 -3.1004 41 1 7.1305 -2.7534 -3.9970 42 1 7.9942 -1.2604 -4.4818 43 1 5.0865 -2.0369 -7.1790 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889166315.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:35 Heat of formation + Delta-G solvation = -36.223571 kcal Electronic energy + Delta-G solvation = -26354.977851 eV Core-core repulsion = 22592.947016 eV Total energy + Delta-G solvation = -3762.030835 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.07712 -39.97769 -38.51279 -36.58334 -35.23244 -34.31747 -32.49492 -31.68117 -31.30395 -29.92738 -28.35132 -26.89706 -25.31654 -23.27654 -22.90821 -21.40678 -20.88108 -20.63020 -19.94154 -18.37491 -17.83359 -17.47534 -16.52379 -16.07685 -15.84407 -15.24380 -15.10875 -14.76123 -14.47767 -14.21220 -13.90859 -13.87695 -13.57265 -13.42117 -13.32882 -12.92829 -12.76645 -12.46676 -12.15714 -11.80947 -11.61484 -11.37787 -11.17899 -11.10968 -11.03414 -10.84477 -10.39689 -10.29439 -10.19273 -10.07673 -9.54866 -9.41934 -9.13044 -8.77969 -8.62598 -8.21405 -7.82122 -6.18582 -4.28272 1.23978 1.41989 2.35627 3.01372 3.08629 3.21313 3.27438 3.28676 3.55797 3.87649 4.13572 4.18434 4.26903 4.47421 4.70005 4.81677 4.83179 4.91139 5.06525 5.14345 5.18600 5.35780 5.46178 5.54000 5.65493 5.69067 5.79397 5.99073 6.30300 6.31279 6.51761 6.55437 6.65201 6.72189 6.75155 6.89759 7.02780 7.11196 7.14658 7.36455 7.55001 7.74904 7.90543 7.98989 8.08478 8.63688 8.75912 9.13063 9.40008 10.87409 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014449 B = 0.003422 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.325868 B = 8181.566781 C = 9800.830997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.281 3.719 3 H 0.050 0.950 4 C -0.536 4.536 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.718 5.718 13 C 0.693 3.307 14 O -0.579 6.579 15 N -0.697 5.697 16 C 0.195 3.805 17 C -0.118 4.118 18 C -0.098 4.098 19 C -0.144 4.144 20 C -0.094 4.094 21 C -0.140 4.140 22 C 0.181 3.819 23 H 0.085 0.915 24 C -0.123 4.123 25 C -0.157 4.157 26 C 0.521 3.479 27 O -0.539 6.539 28 N -0.723 5.723 29 H 0.091 0.909 30 H 0.015 0.985 31 H 0.026 0.974 32 H 0.266 0.734 33 H 0.386 0.614 34 H 0.400 0.600 35 H 0.147 0.853 36 H 0.123 0.877 37 H 0.119 0.881 38 H 0.121 0.879 39 H 0.088 0.912 40 H 0.096 0.904 41 H 0.107 0.893 42 H 0.103 0.897 43 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.297 -4.213 -15.849 17.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.179 3.821 3 H 0.068 0.932 4 C -0.574 4.574 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.368 5.368 13 C 0.394 3.606 14 O -0.457 6.457 15 N -0.345 5.345 16 C 0.098 3.902 17 C -0.139 4.139 18 C -0.117 4.117 19 C -0.163 4.163 20 C -0.112 4.112 21 C -0.144 4.144 22 C 0.075 3.925 23 H 0.103 0.897 24 C -0.161 4.161 25 C -0.197 4.197 26 C 0.308 3.692 27 O -0.416 6.416 28 N -0.378 5.378 29 H 0.109 0.891 30 H 0.034 0.966 31 H 0.045 0.955 32 H 0.076 0.924 33 H 0.218 0.782 34 H 0.235 0.765 35 H 0.164 0.836 36 H 0.141 0.859 37 H 0.137 0.863 38 H 0.139 0.861 39 H 0.107 0.893 40 H 0.114 0.886 41 H 0.125 0.875 42 H 0.122 0.878 43 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 5.404 -3.216 -15.871 17.071 hybrid contribution 0.157 -1.352 0.577 1.478 sum 5.562 -4.568 -15.294 16.903 Atomic orbital electron populations 1.22113 0.98527 0.99125 1.00973 1.18690 0.90833 0.93756 0.78776 0.93217 1.21152 1.32713 1.13347 0.90228 0.92111 1.24871 0.94760 0.94940 0.99040 1.69887 1.35628 1.22347 1.24110 0.86496 0.79175 0.79564 0.81782 1.20152 1.21098 1.20157 1.45888 1.68464 1.13322 1.09174 1.16144 0.78754 0.85441 0.80304 1.90880 1.56293 1.14356 1.84123 1.42884 1.70962 1.11197 1.09493 1.17244 0.92893 0.94272 0.85780 1.21457 1.00048 0.95808 0.96589 1.21114 0.97562 0.99179 0.93811 1.21033 0.96704 0.98240 1.00335 1.20663 0.99239 0.95455 0.95884 1.19589 0.96227 1.00620 0.98012 1.20332 0.92450 0.94018 0.85674 0.89692 1.22722 0.92649 1.01183 0.99549 1.22422 1.00744 1.02641 0.93910 1.20916 0.81836 0.75818 0.90644 1.90758 1.49769 1.46642 1.54393 1.46318 1.10459 1.67961 1.13098 0.89063 0.96592 0.95497 0.92430 0.78193 0.76479 0.83565 0.85879 0.86269 0.86100 0.89340 0.88578 0.87512 0.87845 0.75056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.53 9.26 37.16 0.34 -3.18 16 2 C 0.28 6.74 2.56 -69.08 -0.18 6.57 16 3 H 0.05 1.39 7.58 -51.93 -0.39 1.00 16 4 C -0.54 -13.47 8.73 -34.44 -0.30 -13.77 16 5 H 0.06 1.44 7.74 -52.49 -0.41 1.04 16 6 C 0.07 1.75 5.30 -17.82 -0.09 1.65 16 7 N -0.88 -24.05 11.32 55.43 0.63 -23.42 16 8 Si 0.90 19.88 29.54 -169.99 -5.02 14.86 16 9 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 10 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 12 N -0.72 -13.55 5.07 -59.81 -0.30 -13.86 16 13 C 0.69 12.62 8.37 -86.92 -0.73 11.89 16 14 O -0.58 -12.85 13.42 5.29 0.07 -12.78 16 15 N -0.70 -9.14 5.03 -14.23 -0.07 -9.21 16 16 C 0.20 2.54 6.29 -83.69 -0.53 2.01 16 17 C -0.12 -1.69 8.70 -39.40 -0.34 -2.03 16 18 C -0.10 -1.15 10.04 -39.61 -0.40 -1.55 16 19 C -0.14 -1.48 10.04 -39.55 -0.40 -1.87 16 20 C -0.09 -0.94 9.24 -39.61 -0.37 -1.31 16 21 C -0.14 -1.48 5.04 -104.43 -0.53 -2.00 16 22 C 0.18 1.53 3.33 -68.16 -0.23 1.31 16 23 H 0.09 0.61 6.94 -51.93 -0.36 0.25 16 24 C -0.12 -1.05 6.69 -25.01 -0.17 -1.21 16 25 C -0.16 -1.29 6.87 -26.66 -0.18 -1.47 16 26 C 0.52 5.62 8.43 -10.86 -0.09 5.52 16 27 O -0.54 -7.99 18.03 5.56 0.10 -7.89 16 28 N -0.72 -6.24 4.75 -53.88 -0.26 -6.50 16 29 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 30 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 33 H 0.39 6.10 8.56 -40.82 -0.35 5.75 16 34 H 0.40 3.90 7.44 -40.82 -0.30 3.60 16 35 H 0.15 2.45 6.20 -52.48 -0.33 2.13 16 36 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 37 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 38 H 0.12 1.06 6.97 -52.49 -0.37 0.69 16 39 H 0.09 0.85 7.91 -51.93 -0.41 0.44 16 40 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 43 H 0.41 3.14 8.51 -40.82 -0.35 2.79 16 LS Contribution 356.39 15.07 5.37 5.37 Total: -1.00 -31.88 356.39 -9.33 -41.21 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: -5.67 Total: 11.67 kcal Atomic # 6 Polarization: 4.73 SS G_CDS: -4.18 Total: 0.55 kcal Atomic # 7 Polarization: -52.98 SS G_CDS: 0.00 Total: -52.99 kcal Atomic # 8 Polarization: -20.85 SS G_CDS: 0.17 Total: -20.68 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.86 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.88 -9.33 -41.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889166315.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.990 kcal (2) G-P(sol) polarization free energy of solvation -31.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds