Wall clock time and date at job start Tue Mar 31 2020 11:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47395 * 2 1 4 4 C 1.50707 * 109.47048 * 119.99762 * 2 1 3 5 5 H 1.07997 * 119.99841 * 120.00666 * 4 2 1 6 6 C 1.37877 * 119.99780 * 300.00003 * 4 2 1 7 7 N 1.31510 * 119.99972 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99698 * 180.02562 * 6 4 2 9 9 H 1.48508 * 109.47309 * 60.00201 * 8 6 4 10 10 H 1.48505 * 109.47032 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47300 * 300.00124 * 8 6 4 12 12 N 1.46504 * 109.47445 * 239.99618 * 2 1 3 13 13 C 1.34779 * 119.99806 * 85.00133 * 12 2 1 14 14 O 1.21584 * 119.99910 * 0.02562 * 13 12 2 15 15 N 1.34768 * 119.99894 * 180.02562 * 13 12 2 16 16 C 1.39950 * 120.00332 * 184.50273 * 15 13 12 17 17 C 1.38885 * 120.06663 * 325.27317 * 16 15 13 18 18 C 1.38094 * 119.93010 * 180.29455 * 17 16 15 19 19 C 1.38307 * 120.06996 * 359.68306 * 18 17 16 20 20 C 1.38255 * 120.13567 * 0.02562 * 19 18 17 21 21 C 1.38135 * 120.07491 * 0.02562 * 20 19 18 22 22 C 1.50701 * 120.03909 * 180.02562 * 21 20 19 23 23 H 1.08996 * 110.21976 * 219.52256 * 22 21 20 24 24 C 1.54488 * 110.31754 * 97.54603 * 22 21 20 25 25 C 1.54781 * 101.69162 * 215.35381 * 24 22 21 26 26 C 1.51285 * 104.11993 * 25.09940 * 25 24 22 27 27 O 1.21282 * 124.93927 * 163.67192 * 26 25 24 28 28 N 1.34417 * 110.11596 * 343.41118 * 26 25 24 29 29 H 1.08997 * 109.47126 * 299.99834 * 1 2 3 30 30 H 1.09000 * 109.46848 * 60.00404 * 1 2 3 31 31 H 1.09005 * 109.46605 * 180.02562 * 1 2 3 32 32 H 0.97002 * 119.99769 * 180.02562 * 7 6 4 33 33 H 0.96994 * 119.99804 * 264.99864 * 12 2 1 34 34 H 0.97001 * 120.00487 * 4.50196 * 15 13 12 35 35 H 1.08008 * 120.03639 * 0.02562 * 17 16 15 36 36 H 1.08000 * 119.96893 * 179.70287 * 18 17 16 37 37 H 1.07997 * 119.92887 * 180.02562 * 19 18 17 38 38 H 1.08002 * 119.96591 * 180.02562 * 20 19 18 39 39 H 1.08996 * 110.96827 * 333.66831 * 24 22 21 40 40 H 1.08998 * 110.96642 * 97.38948 * 24 22 21 41 41 H 1.09000 * 110.61865 * 266.40256 * 25 24 22 42 42 H 1.08998 * 110.42716 * 143.70823 * 25 24 22 43 43 H 0.97003 * 124.34364 * 179.80180 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6533 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9427 0.8297 2.6033 8 14 2.3224 -1.1194 4.0080 9 1 3.8075 -1.1188 4.0078 10 1 1.8278 -0.4190 5.2205 11 1 1.8280 -2.5196 4.0083 12 7 2.0184 -0.6907 -1.1961 13 6 2.1471 -0.0184 -2.3571 14 8 1.8584 1.1614 -2.4116 15 7 2.5960 -0.6538 -3.4576 16 6 2.8194 0.0640 -4.6380 17 6 1.9960 1.1323 -4.9692 18 6 2.2153 1.8348 -6.1377 19 6 3.2576 1.4797 -6.9746 20 6 4.0826 0.4205 -6.6447 21 6 3.8679 -0.2869 -5.4778 22 6 4.7681 -1.4410 -5.1187 23 1 4.1843 -2.2540 -4.6873 24 6 5.8594 -0.9815 -4.1265 25 6 7.0713 -1.8324 -4.5770 26 6 6.7864 -2.1398 -6.0307 27 8 7.6064 -2.5404 -6.8295 28 7 5.4912 -1.9097 -6.3067 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 0.7086 1.1614 3.4843 33 1 2.2491 -1.6318 -1.1525 34 1 2.7642 -1.6088 -3.4316 35 1 1.1824 1.4107 -4.3156 36 1 1.5725 2.6627 -6.3982 37 1 3.4272 2.0309 -7.8877 38 1 4.8959 0.1458 -7.3001 39 1 6.0634 0.0835 -4.2368 40 1 5.5784 -1.2185 -3.1004 41 1 7.1305 -2.7534 -3.9970 42 1 7.9942 -1.2604 -4.4818 43 1 5.0865 -2.0369 -7.1790 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889166315.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:34 Heat of formation + Delta-G solvation = -58.243651 kcal Electronic energy + Delta-G solvation = -26355.932714 eV Core-core repulsion = 22592.947016 eV Total energy + Delta-G solvation = -3762.985698 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.02727 -41.10890 -39.65849 -37.48661 -36.85374 -35.67733 -34.29716 -32.45035 -32.16000 -31.32647 -29.76636 -27.73034 -27.29455 -24.45174 -23.79168 -22.72545 -21.83752 -21.56665 -21.37288 -19.80494 -18.91181 -18.39049 -17.78011 -17.38953 -16.96524 -16.70254 -16.39441 -16.03510 -15.53652 -15.37267 -15.11989 -14.92671 -14.69506 -14.49006 -14.35315 -14.13271 -13.80991 -13.70401 -13.50810 -13.03346 -12.90443 -12.82952 -12.70117 -12.53949 -12.23535 -12.15910 -12.12008 -11.92889 -11.37797 -11.07580 -11.01000 -10.92203 -10.55919 -10.29310 -9.81988 -9.68623 -8.95605 -8.14461 -6.31316 0.32270 0.46067 1.48609 1.50212 1.53930 1.57708 1.78020 2.23075 2.31875 2.44982 2.85190 3.16809 3.40639 3.41653 3.46493 3.75853 4.00694 4.05086 4.12467 4.23294 4.47746 4.49993 4.61210 4.72371 4.78875 4.85356 4.96310 5.00603 5.06759 5.10541 5.13745 5.31335 5.43181 5.45626 5.57687 5.61662 5.67297 5.71449 5.80364 5.88812 5.98529 6.11458 6.13324 6.28183 6.76869 7.20922 7.26667 7.37781 7.72182 8.91755 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014449 B = 0.003422 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.325868 B = 8181.566781 C = 9800.830997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.291 3.709 3 H 0.000 1.000 4 C -0.544 4.544 5 H 0.077 0.923 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.971 3.029 9 H -0.270 1.270 10 H -0.290 1.290 11 H -0.264 1.264 12 N -0.712 5.712 13 C 0.695 3.305 14 O -0.623 6.623 15 N -0.674 5.674 16 C 0.174 3.826 17 C -0.145 4.145 18 C -0.105 4.105 19 C -0.135 4.135 20 C -0.093 4.093 21 C -0.126 4.126 22 C 0.183 3.817 23 H 0.108 0.892 24 C -0.121 4.121 25 C -0.149 4.149 26 C 0.518 3.482 27 O -0.584 6.584 28 N -0.711 5.711 29 H 0.066 0.934 30 H 0.011 0.989 31 H 0.040 0.960 32 H 0.265 0.735 33 H 0.404 0.596 34 H 0.419 0.581 35 H 0.112 0.888 36 H 0.136 0.864 37 H 0.147 0.853 38 H 0.140 0.860 39 H 0.077 0.923 40 H 0.103 0.897 41 H 0.126 0.874 42 H 0.108 0.892 43 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.673 -6.139 -16.660 18.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.187 3.813 3 H 0.018 0.982 4 C -0.583 4.583 5 H 0.095 0.905 6 C -0.185 4.185 7 N -0.556 5.556 8 Si 0.795 3.205 9 H -0.195 1.195 10 H -0.216 1.216 11 H -0.189 1.189 12 N -0.365 5.365 13 C 0.395 3.605 14 O -0.503 6.503 15 N -0.323 5.323 16 C 0.078 3.922 17 C -0.166 4.166 18 C -0.123 4.123 19 C -0.154 4.154 20 C -0.112 4.112 21 C -0.130 4.130 22 C 0.077 3.923 23 H 0.125 0.875 24 C -0.159 4.159 25 C -0.189 4.189 26 C 0.306 3.694 27 O -0.464 6.464 28 N -0.365 5.365 29 H 0.084 0.916 30 H 0.030 0.970 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.239 0.761 34 H 0.258 0.742 35 H 0.130 0.870 36 H 0.154 0.846 37 H 0.165 0.835 38 H 0.158 0.842 39 H 0.096 0.904 40 H 0.121 0.879 41 H 0.144 0.856 42 H 0.127 0.873 43 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 6.781 -5.199 -16.736 18.791 hybrid contribution -0.283 -0.677 0.689 1.007 sum 6.498 -5.876 -16.046 18.282 Atomic orbital electron populations 1.21937 0.98592 0.99420 0.99513 1.18214 0.90710 0.91706 0.80678 0.98192 1.21513 1.32555 1.13636 0.90557 0.90506 1.25763 0.94906 0.95553 1.02261 1.70047 1.37006 1.23970 1.24623 0.85421 0.78696 0.78689 0.77659 1.19488 1.21572 1.18876 1.45416 1.68812 1.13995 1.08259 1.16201 0.78418 0.84849 0.80997 1.90866 1.57956 1.16571 1.84936 1.42427 1.69815 1.11947 1.08141 1.17334 0.94073 0.94735 0.86059 1.21348 1.00232 0.97467 0.97521 1.21286 0.98444 0.99372 0.93232 1.21362 0.95425 0.97946 1.00674 1.20952 0.99413 0.95025 0.95767 1.19686 0.95192 1.00800 0.97330 1.20425 0.92311 0.93929 0.85608 0.87490 1.22705 0.92693 1.00619 0.99880 1.22431 1.00740 1.03447 0.92266 1.21292 0.81826 0.75014 0.91273 1.90741 1.51019 1.48900 1.55790 1.46260 1.09904 1.66877 1.13468 0.91571 0.96967 0.94109 0.92622 0.76059 0.74235 0.86968 0.84639 0.83496 0.84244 0.90441 0.87853 0.85648 0.87316 0.74385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.60 9.26 71.98 0.67 -5.93 16 2 C 0.29 14.23 2.56 44.25 0.11 14.35 16 3 H 0.00 0.01 7.58 -2.39 -0.02 -0.01 16 4 C -0.54 -27.16 8.73 25.60 0.22 -26.93 16 5 H 0.08 3.50 7.74 -2.91 -0.02 3.48 16 6 C 0.02 0.79 5.30 84.66 0.45 1.24 16 7 N -0.92 -51.17 11.32 21.45 0.24 -50.92 16 8 Si 0.97 40.25 29.54 68.60 2.03 42.28 16 9 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 10 H -0.29 -12.13 7.11 99.48 0.71 -11.43 16 11 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 12 N -0.71 -26.70 5.07 -461.41 -2.34 -29.05 16 13 C 0.69 25.49 8.37 179.06 1.50 26.98 16 14 O -0.62 -28.87 13.42 -3.98 -0.05 -28.93 16 15 N -0.67 -16.96 5.03 -317.19 -1.60 -18.56 16 16 C 0.17 4.37 6.29 38.14 0.24 4.61 16 17 C -0.14 -4.21 8.70 22.39 0.19 -4.01 16 18 C -0.10 -2.38 10.04 22.25 0.22 -2.16 16 19 C -0.14 -2.44 10.04 22.29 0.22 -2.22 16 20 C -0.09 -1.61 9.24 22.25 0.21 -1.40 16 21 C -0.13 -2.37 5.04 -19.74 -0.10 -2.47 16 22 C 0.18 2.55 3.33 44.70 0.15 2.70 16 23 H 0.11 1.11 6.94 -2.39 -0.02 1.10 16 24 C -0.12 -1.73 6.69 31.71 0.21 -1.52 16 25 C -0.15 -2.04 6.87 30.64 0.21 -1.83 16 26 C 0.52 10.02 8.43 87.90 0.74 10.76 16 27 O -0.58 -16.60 18.03 -3.04 -0.05 -16.65 16 28 N -0.71 -10.27 4.75 -442.97 -2.10 -12.37 16 29 H 0.07 3.56 6.07 -2.39 -0.01 3.55 16 30 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.04 1.81 8.14 -2.38 -0.02 1.79 16 32 H 0.26 14.06 8.31 -92.71 -0.77 13.29 16 33 H 0.40 12.07 8.56 -92.71 -0.79 11.27 16 34 H 0.42 7.15 7.44 -92.71 -0.69 6.46 16 35 H 0.11 4.04 6.20 -2.91 -0.02 4.02 16 36 H 0.14 2.62 8.06 -2.91 -0.02 2.59 16 37 H 0.15 1.85 8.06 -2.91 -0.02 1.82 16 38 H 0.14 1.95 6.97 -2.91 -0.02 1.93 16 39 H 0.08 1.32 7.91 -2.39 -0.02 1.30 16 40 H 0.10 1.38 8.14 -2.39 -0.02 1.37 16 41 H 0.13 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.42 5.17 8.51 -92.71 -0.79 4.38 16 Total: -1.00 -71.91 356.39 0.18 -71.73 By element: Atomic # 1 Polarization: 31.49 SS G_CDS: -1.19 Total: 30.30 kcal Atomic # 6 Polarization: 6.92 SS G_CDS: 5.25 Total: 12.17 kcal Atomic # 7 Polarization: -105.10 SS G_CDS: -5.80 Total: -110.90 kcal Atomic # 8 Polarization: -45.47 SS G_CDS: -0.11 Total: -45.58 kcal Atomic # 14 Polarization: 40.25 SS G_CDS: 2.03 Total: 42.28 kcal Total: -71.91 0.18 -71.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889166315.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.490 kcal (2) G-P(sol) polarization free energy of solvation -71.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds