Wall clock time and date at job start Tue Mar 31 2020 11:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.47449 * 2 1 4 4 C 1.50705 * 109.47275 * 119.99523 * 2 1 3 5 5 H 1.07992 * 120.00138 * 119.99769 * 4 2 1 6 6 C 1.37879 * 119.99660 * 300.00531 * 4 2 1 7 7 N 1.31505 * 120.00379 * 359.97438 * 6 4 2 8 8 Si 1.86810 * 119.99704 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47030 * 59.99738 * 8 6 4 10 10 H 1.48501 * 109.47032 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.46833 * 299.99729 * 8 6 4 12 12 N 1.46499 * 109.47425 * 239.99644 * 2 1 3 13 13 C 1.34769 * 120.00204 * 84.99804 * 12 2 1 14 14 O 1.21591 * 120.00033 * 0.02562 * 13 12 2 15 15 N 1.34771 * 120.00334 * 180.02562 * 13 12 2 16 16 C 1.39944 * 120.00395 * 184.49753 * 15 13 12 17 17 C 1.38889 * 120.06411 * 325.28592 * 16 15 13 18 18 C 1.38105 * 119.92709 * 180.02562 * 17 16 15 19 19 C 1.38302 * 120.06853 * 359.97438 * 18 17 16 20 20 C 1.38260 * 120.14185 * 0.02562 * 19 18 17 21 21 C 1.38131 * 120.07042 * 359.97438 * 20 19 18 22 22 C 1.50699 * 120.03854 * 179.97438 * 21 20 19 23 23 H 1.08999 * 110.21980 * 145.47492 * 22 21 20 24 24 C 1.54480 * 110.24821 * 267.50282 * 22 21 20 25 25 C 1.54633 * 101.76235 * 144.41377 * 24 22 21 26 26 C 1.51280 * 104.19719 * 335.20266 * 25 24 22 27 27 O 1.21284 * 124.94202 * 196.23759 * 26 25 24 28 28 N 1.34413 * 110.11663 * 16.24950 * 26 25 24 29 29 H 1.08997 * 109.46836 * 300.00156 * 1 2 3 30 30 H 1.08995 * 109.46863 * 60.00720 * 1 2 3 31 31 H 1.09001 * 109.47010 * 180.02562 * 1 2 3 32 32 H 0.97009 * 120.00356 * 180.02562 * 7 6 4 33 33 H 0.97005 * 119.99801 * 265.00294 * 12 2 1 34 34 H 0.96997 * 120.00195 * 4.49230 * 15 13 12 35 35 H 1.07997 * 120.03961 * 359.97438 * 17 16 15 36 36 H 1.08004 * 119.96303 * 180.02562 * 18 17 16 37 37 H 1.07998 * 119.92542 * 179.72416 * 19 18 17 38 38 H 1.07994 * 119.96499 * 179.97438 * 20 19 18 39 39 H 1.09001 * 110.96815 * 262.52910 * 24 22 21 40 40 H 1.08996 * 110.96778 * 26.29508 * 24 22 21 41 41 H 1.09002 * 110.48002 * 216.52240 * 25 24 22 42 42 H 1.09002 * 110.48553 * 93.88258 * 25 24 22 43 43 H 0.96998 * 124.35297 * 180.38600 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 1.2306 5 1 2.6533 -1.5884 1.1316 6 6 1.6992 -0.2392 2.4828 7 7 0.9435 0.8303 2.6034 8 14 2.3214 -1.1201 4.0081 9 1 3.8063 -1.1206 4.0083 10 1 1.8269 -0.4196 5.2206 11 1 1.8258 -2.5199 4.0079 12 7 2.0184 -0.6907 -1.1961 13 6 2.1472 -0.0185 -2.3571 14 8 1.8584 1.1614 -2.4117 15 7 2.5960 -0.6539 -3.4575 16 6 2.8192 0.0638 -4.6380 17 6 1.9958 1.1322 -4.9689 18 6 2.2184 1.8383 -6.1348 19 6 3.2601 1.4827 -6.9721 20 6 4.0816 0.4196 -6.6454 21 6 3.8642 -0.2906 -5.4808 22 6 4.7596 -1.4495 -5.1257 23 1 4.8939 -1.5047 -4.0454 24 6 4.1622 -2.7701 -5.6601 25 6 5.4345 -3.5530 -6.0591 26 6 6.4654 -2.4772 -6.3208 27 8 7.5066 -2.6439 -6.9200 28 7 6.0596 -1.3098 -5.7925 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 0.7094 1.1620 3.4844 33 1 2.2491 -1.6319 -1.1524 34 1 2.7643 -1.6088 -3.4314 35 1 1.1819 1.4101 -4.3158 36 1 1.5787 2.6694 -6.3926 37 1 3.4293 2.0336 -7.8855 38 1 4.8939 0.1442 -7.3015 39 1 3.6111 -3.2933 -4.8787 40 1 3.5279 -2.5882 -6.5277 41 1 5.2554 -4.1375 -6.9616 42 1 5.7565 -4.1993 -5.2425 43 1 6.5616 -0.4814 -5.8448 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889166316.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:38 Heat of formation + Delta-G solvation = -37.259971 kcal Electronic energy + Delta-G solvation = -26256.507598 eV Core-core repulsion = 22494.431821 eV Total energy + Delta-G solvation = -3762.075777 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.09299 -39.98973 -38.51648 -36.60251 -35.23620 -34.32401 -32.49640 -31.71120 -31.33459 -29.93347 -28.35515 -26.93152 -25.31655 -23.27383 -22.94570 -21.37017 -20.94966 -20.67698 -19.93651 -18.33010 -17.82204 -17.49660 -16.60098 -16.08522 -15.84881 -15.27688 -15.13447 -14.70537 -14.50917 -14.17770 -13.98014 -13.89924 -13.67048 -13.39967 -13.29329 -13.03809 -12.83327 -12.47100 -12.09594 -11.82326 -11.61870 -11.43979 -11.25533 -11.13373 -11.03199 -10.84456 -10.39570 -10.29478 -10.18875 -10.13240 -9.47948 -9.46502 -9.13154 -8.76951 -8.62593 -8.22048 -7.83262 -6.18507 -4.28216 1.23317 1.41999 2.34540 3.02411 3.08479 3.21474 3.27483 3.28886 3.54576 3.86178 4.07787 4.14724 4.27049 4.37167 4.70164 4.77938 4.82026 4.89168 5.07554 5.14365 5.17843 5.32751 5.35976 5.44527 5.56588 5.63762 5.71672 5.99176 6.29666 6.32422 6.51442 6.55440 6.65095 6.72129 6.76872 6.89577 7.02453 7.11024 7.14152 7.36134 7.55016 7.74647 7.90465 7.98546 8.08370 8.63362 8.75634 9.12346 9.39978 10.87470 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014553 B = 0.003287 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.501731 B = 8515.294109 C = 9962.800876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.281 3.719 3 H 0.050 0.950 4 C -0.536 4.536 5 H 0.061 0.939 6 C 0.068 3.932 7 N -0.883 5.883 8 Si 0.903 3.097 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.717 5.717 13 C 0.692 3.308 14 O -0.579 6.579 15 N -0.697 5.697 16 C 0.195 3.805 17 C -0.119 4.119 18 C -0.097 4.097 19 C -0.145 4.145 20 C -0.092 4.092 21 C -0.141 4.141 22 C 0.175 3.825 23 H 0.091 0.909 24 C -0.127 4.127 25 C -0.156 4.156 26 C 0.520 3.480 27 O -0.539 6.539 28 N -0.720 5.720 29 H 0.091 0.909 30 H 0.015 0.985 31 H 0.026 0.974 32 H 0.266 0.734 33 H 0.386 0.614 34 H 0.400 0.600 35 H 0.147 0.853 36 H 0.123 0.877 37 H 0.119 0.881 38 H 0.121 0.879 39 H 0.093 0.907 40 H 0.089 0.911 41 H 0.103 0.897 42 H 0.107 0.893 43 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.530 -6.040 -17.432 18.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.179 3.821 3 H 0.068 0.932 4 C -0.575 4.575 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.201 1.201 12 N -0.368 5.368 13 C 0.392 3.608 14 O -0.456 6.456 15 N -0.344 5.344 16 C 0.098 3.902 17 C -0.139 4.139 18 C -0.116 4.116 19 C -0.164 4.164 20 C -0.111 4.111 21 C -0.145 4.145 22 C 0.070 3.930 23 H 0.109 0.891 24 C -0.165 4.165 25 C -0.196 4.196 26 C 0.306 3.694 27 O -0.416 6.416 28 N -0.376 5.376 29 H 0.109 0.891 30 H 0.034 0.966 31 H 0.045 0.955 32 H 0.076 0.924 33 H 0.218 0.782 34 H 0.235 0.765 35 H 0.164 0.836 36 H 0.141 0.859 37 H 0.137 0.863 38 H 0.139 0.861 39 H 0.112 0.888 40 H 0.107 0.893 41 H 0.121 0.879 42 H 0.125 0.875 43 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 3.633 -5.043 -17.456 18.529 hybrid contribution 0.637 -0.876 0.994 1.470 sum 4.270 -5.919 -16.462 18.008 Atomic orbital electron populations 1.22109 0.98472 0.99140 1.00983 1.18697 0.90866 0.93758 0.78771 0.93235 1.21153 1.32725 1.13364 0.90236 0.92113 1.24872 0.94754 0.94940 0.99040 1.69885 1.35653 1.22314 1.24115 0.86493 0.79173 0.79571 0.81768 1.20171 1.21083 1.20134 1.45889 1.68421 1.13332 1.09168 1.16169 0.78778 0.85465 0.80339 1.90881 1.56300 1.14323 1.84113 1.42892 1.70773 1.11259 1.09516 1.17262 0.93386 0.94134 0.85394 1.21460 1.00035 0.95813 0.96635 1.21117 0.97491 0.99121 0.93870 1.21034 0.96744 0.98274 1.00312 1.20659 0.99435 0.95392 0.95588 1.19559 0.96724 1.00447 0.97808 1.20438 0.81810 0.93378 0.97394 0.89082 1.22756 0.97143 0.93723 1.02922 1.22373 0.94533 0.97880 1.04828 1.20884 0.86597 0.84723 0.77158 1.90764 1.25635 1.83307 1.41851 1.46306 1.21975 1.12369 1.56913 0.89060 0.96575 0.95470 0.92423 0.78181 0.76482 0.83568 0.85867 0.86266 0.86111 0.88838 0.89271 0.87853 0.87503 0.74890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.53 9.26 37.16 0.34 -3.18 16 2 C 0.28 6.80 2.56 -69.08 -0.18 6.63 16 3 H 0.05 1.40 7.58 -51.93 -0.39 1.01 16 4 C -0.54 -13.62 8.73 -34.44 -0.30 -13.92 16 5 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.88 -24.18 11.32 55.43 0.63 -23.55 16 8 Si 0.90 20.03 29.54 -169.99 -5.02 15.01 16 9 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 10 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 12 N -0.72 -13.75 5.07 -59.81 -0.30 -14.05 16 13 C 0.69 12.81 8.37 -86.93 -0.73 12.09 16 14 O -0.58 -13.01 13.42 5.29 0.07 -12.94 16 15 N -0.70 -9.27 4.80 -14.23 -0.07 -9.34 16 16 C 0.20 2.56 6.29 -83.69 -0.53 2.04 16 17 C -0.12 -1.70 8.70 -39.39 -0.34 -2.04 16 18 C -0.10 -1.14 10.04 -39.61 -0.40 -1.54 16 19 C -0.14 -1.48 10.04 -39.55 -0.40 -1.88 16 20 C -0.09 -0.92 9.26 -39.61 -0.37 -1.29 16 21 C -0.14 -1.49 5.01 -104.44 -0.52 -2.01 16 22 C 0.18 1.50 3.09 -68.16 -0.21 1.28 16 23 H 0.09 0.81 7.46 -51.93 -0.39 0.42 16 24 C -0.13 -0.80 6.60 -25.10 -0.17 -0.97 16 25 C -0.16 -1.08 6.86 -26.74 -0.18 -1.26 16 26 C 0.52 5.49 8.43 -10.86 -0.09 5.40 16 27 O -0.54 -7.96 18.03 5.55 0.10 -7.86 16 28 N -0.72 -6.59 4.73 -53.88 -0.25 -6.84 16 29 H 0.09 2.38 6.07 -51.93 -0.32 2.07 16 30 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 33 H 0.39 6.18 8.56 -40.82 -0.35 5.83 16 34 H 0.40 3.90 7.81 -40.82 -0.32 3.58 16 35 H 0.15 2.46 6.20 -52.49 -0.33 2.13 16 36 H 0.12 1.22 8.06 -52.48 -0.42 0.80 16 37 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 38 H 0.12 1.07 7.21 -52.49 -0.38 0.69 16 39 H 0.09 0.42 8.05 -51.93 -0.42 0.00 16 40 H 0.09 0.56 7.90 -51.93 -0.41 0.15 16 41 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.41 3.64 8.76 -40.82 -0.36 3.28 16 LS Contribution 357.08 15.07 5.38 5.38 Total: -1.00 -32.42 357.08 -9.36 -41.78 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: -5.73 Total: 11.41 kcal Atomic # 6 Polarization: 5.16 SS G_CDS: -4.16 Total: 1.00 kcal Atomic # 7 Polarization: -53.78 SS G_CDS: 0.00 Total: -53.78 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: 0.17 Total: -20.80 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.42 -9.36 -41.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889166316.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.519 kcal (2) G-P(sol) polarization free energy of solvation -32.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds