Wall clock time and date at job start Tue Mar 31 2020 11:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.47449 * 2 1 4 4 C 1.50705 * 109.47275 * 119.99523 * 2 1 3 5 5 H 1.07992 * 120.00138 * 119.99769 * 4 2 1 6 6 C 1.37879 * 119.99660 * 300.00531 * 4 2 1 7 7 N 1.31505 * 120.00379 * 359.97438 * 6 4 2 8 8 Si 1.86810 * 119.99704 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47030 * 59.99738 * 8 6 4 10 10 H 1.48501 * 109.47032 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.46833 * 299.99729 * 8 6 4 12 12 N 1.46499 * 109.47425 * 239.99644 * 2 1 3 13 13 C 1.34769 * 120.00204 * 84.99804 * 12 2 1 14 14 O 1.21591 * 120.00033 * 0.02562 * 13 12 2 15 15 N 1.34771 * 120.00334 * 180.02562 * 13 12 2 16 16 C 1.39944 * 120.00395 * 184.49753 * 15 13 12 17 17 C 1.38889 * 120.06411 * 325.28592 * 16 15 13 18 18 C 1.38105 * 119.92709 * 180.02562 * 17 16 15 19 19 C 1.38302 * 120.06853 * 359.97438 * 18 17 16 20 20 C 1.38260 * 120.14185 * 0.02562 * 19 18 17 21 21 C 1.38131 * 120.07042 * 359.97438 * 20 19 18 22 22 C 1.50699 * 120.03854 * 179.97438 * 21 20 19 23 23 H 1.08999 * 110.21980 * 145.47492 * 22 21 20 24 24 C 1.54480 * 110.24821 * 267.50282 * 22 21 20 25 25 C 1.54633 * 101.76235 * 144.41377 * 24 22 21 26 26 C 1.51280 * 104.19719 * 335.20266 * 25 24 22 27 27 O 1.21284 * 124.94202 * 196.23759 * 26 25 24 28 28 N 1.34413 * 110.11663 * 16.24950 * 26 25 24 29 29 H 1.08997 * 109.46836 * 300.00156 * 1 2 3 30 30 H 1.08995 * 109.46863 * 60.00720 * 1 2 3 31 31 H 1.09001 * 109.47010 * 180.02562 * 1 2 3 32 32 H 0.97009 * 120.00356 * 180.02562 * 7 6 4 33 33 H 0.97005 * 119.99801 * 265.00294 * 12 2 1 34 34 H 0.96997 * 120.00195 * 4.49230 * 15 13 12 35 35 H 1.07997 * 120.03961 * 359.97438 * 17 16 15 36 36 H 1.08004 * 119.96303 * 180.02562 * 18 17 16 37 37 H 1.07998 * 119.92542 * 179.72416 * 19 18 17 38 38 H 1.07994 * 119.96499 * 179.97438 * 20 19 18 39 39 H 1.09001 * 110.96815 * 262.52910 * 24 22 21 40 40 H 1.08996 * 110.96778 * 26.29508 * 24 22 21 41 41 H 1.09002 * 110.48002 * 216.52240 * 25 24 22 42 42 H 1.09002 * 110.48553 * 93.88258 * 25 24 22 43 43 H 0.96998 * 124.35297 * 180.38600 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 1.2306 5 1 2.6533 -1.5884 1.1316 6 6 1.6992 -0.2392 2.4828 7 7 0.9435 0.8303 2.6034 8 14 2.3214 -1.1201 4.0081 9 1 3.8063 -1.1206 4.0083 10 1 1.8269 -0.4196 5.2206 11 1 1.8258 -2.5199 4.0079 12 7 2.0184 -0.6907 -1.1961 13 6 2.1472 -0.0185 -2.3571 14 8 1.8584 1.1614 -2.4117 15 7 2.5960 -0.6539 -3.4575 16 6 2.8192 0.0638 -4.6380 17 6 1.9958 1.1322 -4.9689 18 6 2.2184 1.8383 -6.1348 19 6 3.2601 1.4827 -6.9721 20 6 4.0816 0.4196 -6.6454 21 6 3.8642 -0.2906 -5.4808 22 6 4.7596 -1.4495 -5.1257 23 1 4.8939 -1.5047 -4.0454 24 6 4.1622 -2.7701 -5.6601 25 6 5.4345 -3.5530 -6.0591 26 6 6.4654 -2.4772 -6.3208 27 8 7.5066 -2.6439 -6.9200 28 7 6.0596 -1.3098 -5.7925 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 0.7094 1.1620 3.4844 33 1 2.2491 -1.6319 -1.1524 34 1 2.7643 -1.6088 -3.4314 35 1 1.1819 1.4101 -4.3158 36 1 1.5787 2.6694 -6.3926 37 1 3.4293 2.0336 -7.8855 38 1 4.8939 0.1442 -7.3015 39 1 3.6111 -3.2933 -4.8787 40 1 3.5279 -2.5882 -6.5277 41 1 5.2554 -4.1375 -6.9616 42 1 5.7565 -4.1993 -5.2425 43 1 6.5616 -0.4814 -5.8448 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889166316.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:37 Heat of formation + Delta-G solvation = -59.933891 kcal Electronic energy + Delta-G solvation = -26257.490813 eV Core-core repulsion = 22494.431821 eV Total energy + Delta-G solvation = -3763.058992 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.02878 -41.11169 -39.66336 -37.47955 -36.87019 -35.69688 -34.31631 -32.40440 -32.17238 -31.34328 -29.77610 -27.72553 -27.30823 -24.45584 -23.75999 -22.68935 -21.89529 -21.54608 -21.40322 -19.78924 -18.89401 -18.38106 -17.80719 -17.42844 -16.98417 -16.70587 -16.40168 -16.03420 -15.52364 -15.36662 -15.14453 -14.94331 -14.72421 -14.47472 -14.36474 -14.04960 -13.90958 -13.67966 -13.46497 -12.98483 -12.86917 -12.85874 -12.71529 -12.50799 -12.25561 -12.18187 -12.11754 -11.93405 -11.39330 -11.09265 -10.99784 -10.94553 -10.57483 -10.28343 -9.83911 -9.67319 -8.97594 -8.15985 -6.33058 0.31743 0.45816 1.47166 1.48958 1.55783 1.56451 1.76540 2.20413 2.33306 2.43569 2.85629 3.15109 3.41951 3.44520 3.47278 3.73434 4.01254 4.09529 4.18761 4.25615 4.48864 4.50983 4.62715 4.71982 4.77565 4.87679 4.95637 5.01498 5.07030 5.12310 5.15436 5.31723 5.43290 5.44454 5.57397 5.60172 5.66375 5.70206 5.79718 5.87621 6.00340 6.10904 6.12179 6.26919 6.74959 7.20346 7.24670 7.36004 7.69596 8.90204 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014553 B = 0.003287 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.501731 B = 8515.294109 C = 9962.800876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.290 3.710 3 H -0.001 1.001 4 C -0.546 4.546 5 H 0.076 0.924 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.971 3.029 9 H -0.272 1.272 10 H -0.289 1.289 11 H -0.262 1.262 12 N -0.712 5.712 13 C 0.692 3.308 14 O -0.623 6.623 15 N -0.673 5.673 16 C 0.173 3.827 17 C -0.145 4.145 18 C -0.104 4.104 19 C -0.135 4.135 20 C -0.091 4.091 21 C -0.126 4.126 22 C 0.174 3.826 23 H 0.093 0.907 24 C -0.120 4.120 25 C -0.147 4.147 26 C 0.513 3.487 27 O -0.588 6.588 28 N -0.716 5.716 29 H 0.066 0.934 30 H 0.012 0.988 31 H 0.041 0.959 32 H 0.265 0.735 33 H 0.405 0.595 34 H 0.420 0.580 35 H 0.112 0.888 36 H 0.136 0.864 37 H 0.147 0.853 38 H 0.139 0.861 39 H 0.119 0.881 40 H 0.093 0.907 41 H 0.116 0.884 42 H 0.124 0.876 43 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.443 -8.375 -18.438 20.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.186 3.814 3 H 0.016 0.984 4 C -0.584 4.584 5 H 0.094 0.906 6 C -0.185 4.185 7 N -0.556 5.556 8 Si 0.796 3.204 9 H -0.197 1.197 10 H -0.215 1.215 11 H -0.187 1.187 12 N -0.365 5.365 13 C 0.393 3.607 14 O -0.503 6.503 15 N -0.322 5.322 16 C 0.077 3.923 17 C -0.166 4.166 18 C -0.123 4.123 19 C -0.154 4.154 20 C -0.110 4.110 21 C -0.130 4.130 22 C 0.069 3.931 23 H 0.111 0.889 24 C -0.157 4.157 25 C -0.187 4.187 26 C 0.302 3.698 27 O -0.469 6.469 28 N -0.369 5.369 29 H 0.084 0.916 30 H 0.031 0.969 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.240 0.760 34 H 0.259 0.741 35 H 0.130 0.870 36 H 0.154 0.846 37 H 0.165 0.835 38 H 0.156 0.844 39 H 0.137 0.863 40 H 0.112 0.888 41 H 0.134 0.866 42 H 0.142 0.858 43 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 4.550 -7.433 -18.508 20.457 hybrid contribution 0.374 -0.055 1.177 1.236 sum 4.924 -7.488 -17.331 19.511 Atomic orbital electron populations 1.21924 0.98380 0.99521 0.99543 1.18226 0.90868 0.91626 0.80660 0.98357 1.21513 1.32631 1.13671 0.90609 0.90582 1.25769 0.94884 0.95560 1.02266 1.70044 1.36979 1.23903 1.24659 0.85414 0.78582 0.78786 0.77644 1.19693 1.21458 1.18707 1.45422 1.68783 1.14020 1.08258 1.16256 0.78479 0.84901 0.81082 1.90866 1.57987 1.16548 1.84948 1.42435 1.69624 1.12053 1.08134 1.17359 0.94669 0.94651 0.85641 1.21350 1.00208 0.97437 0.97562 1.21287 0.98377 0.99324 0.93296 1.21362 0.95442 0.97966 1.00638 1.20928 0.99590 0.94990 0.95456 1.19663 0.95669 1.00608 0.97045 1.20545 0.81205 0.93829 0.97542 0.88924 1.22818 0.96960 0.92099 1.03861 1.22408 0.93269 0.96968 1.06057 1.21510 0.86482 0.85717 0.76121 1.90740 1.27891 1.84128 1.44093 1.46360 1.22029 1.12285 1.56237 0.91569 0.96901 0.93960 0.92580 0.76024 0.74146 0.86973 0.84610 0.83500 0.84370 0.86250 0.88837 0.86596 0.85845 0.74984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.57 9.26 71.98 0.67 -5.90 16 2 C 0.29 14.37 2.56 44.25 0.11 14.48 16 3 H 0.00 -0.09 7.58 -2.39 -0.02 -0.11 16 4 C -0.55 -27.59 8.73 25.60 0.22 -27.37 16 5 H 0.08 3.52 7.74 -2.91 -0.02 3.50 16 6 C 0.02 0.80 5.30 84.66 0.45 1.25 16 7 N -0.92 -51.45 11.32 21.45 0.24 -51.21 16 8 Si 0.97 40.62 29.54 68.60 2.03 42.64 16 9 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 10 H -0.29 -12.15 7.11 99.48 0.71 -11.44 16 11 H -0.26 -10.35 7.11 99.48 0.71 -9.65 16 12 N -0.71 -27.19 5.07 -461.41 -2.34 -29.53 16 13 C 0.69 25.92 8.37 179.06 1.50 27.42 16 14 O -0.62 -29.33 13.42 -4.00 -0.05 -29.38 16 15 N -0.67 -17.24 4.80 -317.18 -1.52 -18.76 16 16 C 0.17 4.39 6.29 38.15 0.24 4.63 16 17 C -0.14 -4.22 8.70 22.39 0.19 -4.03 16 18 C -0.10 -2.38 10.04 22.25 0.22 -2.15 16 19 C -0.14 -2.45 10.04 22.29 0.22 -2.23 16 20 C -0.09 -1.59 9.26 22.25 0.21 -1.38 16 21 C -0.13 -2.39 5.01 -19.74 -0.10 -2.48 16 22 C 0.17 2.48 3.09 44.70 0.14 2.62 16 23 H 0.09 1.36 7.46 -2.39 -0.02 1.35 16 24 C -0.12 -1.04 6.60 31.65 0.21 -0.83 16 25 C -0.15 -1.54 6.86 30.59 0.21 -1.33 16 26 C 0.51 9.82 8.43 87.90 0.74 10.56 16 27 O -0.59 -16.88 18.03 -3.04 -0.05 -16.94 16 28 N -0.72 -11.52 4.73 -442.97 -2.09 -13.62 16 29 H 0.07 3.57 6.07 -2.39 -0.01 3.56 16 30 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.27 14.15 8.31 -92.70 -0.77 13.38 16 33 H 0.40 12.28 8.56 -92.70 -0.79 11.49 16 34 H 0.42 7.16 7.81 -92.71 -0.72 6.43 16 35 H 0.11 4.05 6.20 -2.91 -0.02 4.03 16 36 H 0.14 2.63 8.06 -2.91 -0.02 2.60 16 37 H 0.15 1.86 8.06 -2.91 -0.02 1.84 16 38 H 0.14 1.99 7.21 -2.91 -0.02 1.97 16 39 H 0.12 0.49 8.05 -2.39 -0.02 0.47 16 40 H 0.09 0.81 7.90 -2.39 -0.02 0.79 16 41 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.41 6.56 8.76 -92.71 -0.81 5.75 16 Total: -1.00 -73.88 357.08 0.19 -73.69 By element: Atomic # 1 Polarization: 31.12 SS G_CDS: -1.25 Total: 29.86 kcal Atomic # 6 Polarization: 8.01 SS G_CDS: 5.24 Total: 13.25 kcal Atomic # 7 Polarization: -107.41 SS G_CDS: -5.71 Total: -113.12 kcal Atomic # 8 Polarization: -46.21 SS G_CDS: -0.11 Total: -46.32 kcal Atomic # 14 Polarization: 40.62 SS G_CDS: 2.03 Total: 42.64 kcal Total: -73.88 0.19 -73.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889166316.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.753 kcal (2) G-P(sol) polarization free energy of solvation -73.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds