Wall clock time and date at job start Tue Mar 31 2020 11:29:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47082 * 2 1 4 4 C 1.50694 * 109.47156 * 239.99859 * 2 1 3 5 5 H 1.08007 * 119.99889 * 239.99818 * 4 2 1 6 6 C 1.37879 * 120.00309 * 59.99946 * 4 2 1 7 7 N 1.31516 * 119.99339 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00126 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46794 * 90.00294 * 8 6 4 10 10 H 1.48499 * 109.46882 * 209.99959 * 8 6 4 11 11 H 1.48493 * 109.47102 * 330.00049 * 8 6 4 12 12 N 1.46502 * 109.47168 * 119.99970 * 2 1 3 13 13 C 1.34783 * 119.99700 * 275.00248 * 12 2 1 14 14 O 1.21591 * 120.00229 * 359.97438 * 13 12 2 15 15 N 1.34776 * 119.99782 * 179.97438 * 13 12 2 16 16 C 1.39950 * 120.00103 * 184.49775 * 15 13 12 17 17 C 1.38891 * 120.06503 * 325.28287 * 16 15 13 18 18 C 1.38095 * 119.92667 * 179.97438 * 17 16 15 19 19 C 1.38312 * 120.06740 * 359.97438 * 18 17 16 20 20 C 1.38257 * 120.14264 * 0.02562 * 19 18 17 21 21 C 1.38137 * 120.06955 * 0.02562 * 20 19 18 22 22 C 1.50701 * 120.03613 * 180.02562 * 21 20 19 23 23 H 1.08997 * 110.21660 * 221.93164 * 22 21 20 24 24 C 1.54478 * 110.24619 * 99.99652 * 22 21 20 25 25 C 1.54621 * 101.76385 * 215.58237 * 24 22 21 26 26 C 1.51283 * 104.19556 * 24.80205 * 25 24 22 27 27 O 1.21280 * 124.94165 * 163.74347 * 26 25 24 28 28 N 1.34417 * 110.11479 * 343.74569 * 26 25 24 29 29 H 1.08997 * 109.47082 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47439 * 299.99956 * 1 2 3 31 31 H 1.08994 * 109.47052 * 60.00048 * 1 2 3 32 32 H 0.96999 * 119.99336 * 180.02562 * 7 6 4 33 33 H 0.96997 * 120.00180 * 94.99976 * 12 2 1 34 34 H 0.96999 * 120.00164 * 4.50367 * 15 13 12 35 35 H 1.07999 * 120.03641 * 359.95503 * 17 16 15 36 36 H 1.07995 * 119.96481 * 180.02562 * 18 17 16 37 37 H 1.08006 * 119.92360 * 180.02562 * 19 18 17 38 38 H 1.07997 * 119.96485 * 179.72154 * 20 19 18 39 39 H 1.08998 * 110.96968 * 333.70609 * 24 22 21 40 40 H 1.08999 * 110.96542 * 97.42917 * 24 22 21 41 41 H 1.09004 * 110.48221 * 143.47838 * 25 24 22 42 42 H 1.09000 * 110.48950 * 265.99169 * 25 24 22 43 43 H 0.97001 * 124.34414 * 179.57296 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6033 8 14 2.3225 -1.1197 -4.0079 9 1 1.3448 -2.1617 -4.4122 10 1 2.4873 -0.1404 -5.1120 11 1 3.6308 -1.7566 -3.7118 12 7 2.0183 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.8582 1.1617 2.4117 15 7 2.5958 -0.6536 3.4578 16 6 2.6404 0.0184 4.6845 17 6 2.9376 1.3746 4.7246 18 6 2.9804 2.0350 5.9366 19 6 2.7271 1.3475 7.1097 20 6 2.4310 -0.0025 7.0731 21 6 2.3877 -0.6691 5.8640 22 6 2.0643 -2.1405 5.8250 23 1 2.7152 -2.6505 5.1149 24 6 0.5832 -2.3522 5.4402 25 6 0.2098 -3.5875 6.2920 26 6 1.1845 -3.5492 7.4483 27 8 1.0594 -4.1693 8.4830 28 7 2.2093 -2.7279 7.1621 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 0.7089 1.1613 -3.4844 33 1 2.2490 -1.6317 1.1527 34 1 2.8879 -1.5767 3.3996 35 1 3.1353 1.9119 3.8088 36 1 3.2110 3.0896 5.9684 37 1 2.7608 1.8664 8.0563 38 1 2.2381 -0.5375 7.9912 39 1 -0.0198 -1.4885 5.7201 40 1 0.4836 -2.5668 4.3762 41 1 -0.8151 -3.5054 6.6540 42 1 0.3369 -4.5024 5.7134 43 1 2.9494 -2.5466 7.7623 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889166317.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:40 Heat of formation + Delta-G solvation = -36.243965 kcal Electronic energy + Delta-G solvation = -26369.323128 eV Core-core repulsion = 22607.291408 eV Total energy + Delta-G solvation = -3762.031720 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.09057 -39.98031 -38.51439 -36.59566 -35.23413 -34.31835 -32.49635 -31.71230 -31.30582 -29.92480 -28.35387 -26.90630 -25.31638 -23.26303 -22.92080 -21.43840 -20.89024 -20.63275 -19.92534 -18.37595 -17.84341 -17.48180 -16.54731 -16.08427 -15.85192 -15.24288 -15.07639 -14.79573 -14.40259 -14.23919 -14.03036 -13.89281 -13.59378 -13.38708 -13.26800 -12.93620 -12.79743 -12.47487 -12.19355 -11.81304 -11.59742 -11.39231 -11.16681 -11.14091 -11.03531 -10.81570 -10.41270 -10.29623 -10.18935 -10.07917 -9.55493 -9.43082 -9.11542 -8.78179 -8.63728 -8.20667 -7.82527 -6.18942 -4.28514 1.24050 1.42005 2.34407 3.00790 3.07917 3.19908 3.27625 3.29582 3.55754 3.87516 4.11711 4.17031 4.26609 4.46153 4.69033 4.81329 4.82404 4.90268 5.05955 5.14010 5.17956 5.35371 5.44499 5.53170 5.65037 5.67051 5.77924 5.98795 6.30259 6.30789 6.51492 6.54917 6.65362 6.72013 6.74378 6.90275 7.03141 7.11246 7.14579 7.36539 7.55193 7.74573 7.90779 7.97808 8.08425 8.63673 8.75829 9.12988 9.39823 10.87034 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016331 B = 0.003212 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.095780 B = 8715.709931 C = 9882.431585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.281 3.719 3 H 0.050 0.950 4 C -0.535 4.535 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.882 5.882 8 Si 0.902 3.098 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.718 5.718 13 C 0.693 3.307 14 O -0.579 6.579 15 N -0.697 5.697 16 C 0.195 3.805 17 C -0.118 4.118 18 C -0.098 4.098 19 C -0.144 4.144 20 C -0.094 4.094 21 C -0.141 4.141 22 C 0.181 3.819 23 H 0.086 0.914 24 C -0.123 4.123 25 C -0.157 4.157 26 C 0.522 3.478 27 O -0.538 6.538 28 N -0.723 5.723 29 H 0.026 0.974 30 H 0.015 0.985 31 H 0.091 0.909 32 H 0.265 0.735 33 H 0.386 0.614 34 H 0.400 0.600 35 H 0.147 0.853 36 H 0.123 0.877 37 H 0.119 0.881 38 H 0.121 0.879 39 H 0.088 0.912 40 H 0.095 0.905 41 H 0.103 0.897 42 H 0.106 0.894 43 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.853 -4.921 16.488 17.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.179 3.821 3 H 0.068 0.932 4 C -0.574 4.574 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.519 5.519 8 Si 0.730 3.270 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.199 1.199 12 N -0.368 5.368 13 C 0.393 3.607 14 O -0.457 6.457 15 N -0.345 5.345 16 C 0.098 3.902 17 C -0.139 4.139 18 C -0.117 4.117 19 C -0.163 4.163 20 C -0.113 4.113 21 C -0.145 4.145 22 C 0.075 3.925 23 H 0.104 0.896 24 C -0.161 4.161 25 C -0.197 4.197 26 C 0.308 3.692 27 O -0.415 6.415 28 N -0.378 5.378 29 H 0.045 0.955 30 H 0.034 0.966 31 H 0.109 0.891 32 H 0.075 0.925 33 H 0.218 0.782 34 H 0.235 0.765 35 H 0.165 0.835 36 H 0.141 0.859 37 H 0.137 0.863 38 H 0.139 0.861 39 H 0.106 0.894 40 H 0.113 0.887 41 H 0.122 0.878 42 H 0.125 0.875 43 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 2.286 -4.089 16.682 17.327 hybrid contribution 0.885 -1.153 -0.758 1.640 sum 3.172 -5.242 15.924 17.062 Atomic orbital electron populations 1.22102 0.98470 0.99107 1.00983 1.18689 0.90872 0.93734 0.78773 0.93250 1.21195 1.32645 1.13329 0.90235 0.92072 1.24877 0.94791 0.94929 0.99053 1.69902 1.35744 1.22304 1.23990 0.86435 0.79153 0.79271 0.82161 1.20521 1.21043 1.19864 1.45889 1.68432 1.13311 1.09207 1.16148 0.78670 0.85499 0.80338 1.90882 1.56913 1.14014 1.83843 1.42882 1.68610 1.16223 1.06787 1.17238 0.97149 0.92261 0.83541 1.21469 0.99477 0.93566 0.99379 1.21117 0.98680 0.99887 0.91977 1.21036 1.02678 0.94343 0.98257 1.20658 0.99751 0.94443 0.96440 1.19583 1.06765 0.95105 0.93033 1.20328 0.97795 0.90169 0.84186 0.89627 1.22689 0.93830 0.98137 1.01436 1.22390 1.00566 1.00515 0.96252 1.20902 0.82655 0.77761 0.87869 1.90759 1.76761 1.45738 1.28272 1.46311 1.25799 1.47144 1.18577 0.95500 0.96571 0.89093 0.92493 0.78189 0.76481 0.83532 0.85871 0.86272 0.86112 0.89377 0.88652 0.87847 0.87537 0.75030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.50 9.26 37.16 0.34 -3.16 16 2 C 0.28 6.74 2.56 -69.08 -0.18 6.56 16 3 H 0.05 1.38 7.58 -51.93 -0.39 0.99 16 4 C -0.54 -13.48 8.73 -34.44 -0.30 -13.78 16 5 H 0.06 1.46 7.74 -52.48 -0.41 1.06 16 6 C 0.07 1.73 5.30 -17.82 -0.09 1.64 16 7 N -0.88 -24.03 11.32 55.43 0.63 -23.40 16 8 Si 0.90 19.91 29.54 -169.99 -5.02 14.89 16 9 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 10 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 12 N -0.72 -13.53 5.07 -59.81 -0.30 -13.83 16 13 C 0.69 12.59 8.37 -86.91 -0.73 11.86 16 14 O -0.58 -12.84 13.42 5.29 0.07 -12.77 16 15 N -0.70 -9.12 5.04 -14.22 -0.07 -9.19 16 16 C 0.20 2.54 6.29 -83.69 -0.53 2.01 16 17 C -0.12 -1.69 8.70 -39.39 -0.34 -2.04 16 18 C -0.10 -1.15 10.04 -39.61 -0.40 -1.55 16 19 C -0.14 -1.48 10.04 -39.55 -0.40 -1.87 16 20 C -0.09 -0.94 9.24 -39.61 -0.37 -1.31 16 21 C -0.14 -1.47 5.04 -104.43 -0.53 -2.00 16 22 C 0.18 1.51 3.28 -68.17 -0.22 1.28 16 23 H 0.09 0.60 7.06 -51.93 -0.37 0.23 16 24 C -0.12 -1.02 6.67 -25.10 -0.17 -1.18 16 25 C -0.16 -1.25 6.86 -26.74 -0.18 -1.44 16 26 C 0.52 5.55 8.43 -10.86 -0.09 5.45 16 27 O -0.54 -7.92 18.03 5.56 0.10 -7.82 16 28 N -0.72 -6.16 4.77 -53.88 -0.26 -6.42 16 29 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.09 2.37 6.07 -51.93 -0.32 2.05 16 32 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 33 H 0.39 6.08 8.56 -40.82 -0.35 5.73 16 34 H 0.40 3.89 7.49 -40.82 -0.31 3.58 16 35 H 0.15 2.48 6.20 -52.49 -0.33 2.15 16 36 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 37 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 38 H 0.12 1.04 6.85 -52.49 -0.36 0.68 16 39 H 0.09 0.83 7.90 -51.93 -0.41 0.42 16 40 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.41 3.10 8.38 -40.82 -0.34 2.76 16 LS Contribution 356.29 15.07 5.37 5.37 Total: -1.00 -31.93 356.29 -9.33 -41.27 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -5.67 Total: 11.42 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: -4.18 Total: 0.49 kcal Atomic # 7 Polarization: -52.84 SS G_CDS: 0.00 Total: -52.84 kcal Atomic # 8 Polarization: -20.76 SS G_CDS: 0.17 Total: -20.59 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.89 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.93 -9.33 -41.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889166317.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.022 kcal (2) G-P(sol) polarization free energy of solvation -31.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds