Wall clock time and date at job start Tue Mar 31 2020 11:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47472 * 2 1 4 4 C 1.50706 * 109.47195 * 239.99936 * 2 1 3 5 5 H 1.07995 * 119.99839 * 240.00510 * 4 2 1 6 6 C 1.37875 * 119.99657 * 60.00298 * 4 2 1 7 7 N 1.31512 * 120.00034 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 119.99796 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47562 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.47213 * 119.99809 * 8 6 4 11 11 H 1.48502 * 109.47308 * 239.99911 * 8 6 4 12 12 N 1.46503 * 109.47342 * 120.00144 * 2 1 3 13 13 C 1.34773 * 120.00140 * 275.00364 * 12 2 1 14 14 O 1.21590 * 120.00034 * 359.97438 * 13 12 2 15 15 N 1.34770 * 120.00267 * 180.27072 * 13 12 2 16 16 C 1.39948 * 120.00382 * 174.09647 * 15 13 12 17 17 C 1.38884 * 120.06524 * 335.19242 * 16 15 13 18 18 C 1.38100 * 119.92699 * 180.02562 * 17 16 15 19 19 C 1.38299 * 120.06845 * 359.97438 * 18 17 16 20 20 C 1.38259 * 120.14178 * 0.02562 * 19 18 17 21 21 C 1.38133 * 120.06833 * 359.71916 * 20 19 18 22 22 C 1.50703 * 120.03391 * 180.30315 * 21 20 19 23 23 H 1.08998 * 110.21729 * 145.72672 * 22 21 20 24 24 C 1.54477 * 110.24227 * 267.75064 * 22 21 20 25 25 C 1.54630 * 101.76692 * 144.41842 * 24 22 21 26 26 C 1.51284 * 104.19029 * 335.20004 * 25 24 22 27 27 O 1.21290 * 124.93995 * 196.23128 * 26 25 24 28 28 N 1.34416 * 110.12000 * 16.25376 * 26 25 24 29 29 H 1.08998 * 109.46977 * 300.00058 * 1 2 3 30 30 H 1.08998 * 109.47027 * 59.99765 * 1 2 3 31 31 H 1.08992 * 109.47020 * 179.97438 * 1 2 3 32 32 H 0.97006 * 119.99804 * 179.97438 * 7 6 4 33 33 H 0.97002 * 119.99709 * 94.99226 * 12 2 1 34 34 H 0.97002 * 119.99860 * 354.09555 * 15 13 12 35 35 H 1.07999 * 120.04264 * 359.97438 * 17 16 15 36 36 H 1.07997 * 119.96307 * 179.97438 * 18 17 16 37 37 H 1.08003 * 119.92761 * 179.97438 * 19 18 17 38 38 H 1.07999 * 119.95895 * 180.02562 * 20 19 18 39 39 H 1.09003 * 110.97049 * 262.53079 * 24 22 21 40 40 H 1.09001 * 110.97637 * 26.29647 * 24 22 21 41 41 H 1.08999 * 110.48909 * 216.52192 * 25 24 22 42 42 H 1.08996 * 110.48947 * 93.87316 * 25 24 22 43 43 H 0.96998 * 124.35587 * 180.38655 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6033 8 14 2.3214 -1.1203 -4.0079 9 1 3.1465 -2.2870 -3.6039 10 1 1.1660 -1.5866 -4.8161 11 1 3.1467 -0.1873 -4.8165 12 7 2.0184 -0.6906 1.1962 13 6 2.1471 -0.0184 2.3571 14 8 1.8583 1.1615 2.4117 15 7 2.6015 -0.6523 3.4562 16 6 2.8526 0.0709 4.6277 17 6 3.1403 1.4279 4.5595 18 6 3.3881 2.1386 5.7173 19 6 3.3495 1.5006 6.9438 20 6 3.0633 0.1499 7.0149 21 6 2.8094 -0.5655 5.8609 22 6 2.4908 -2.0364 5.9400 23 1 1.7744 -2.3088 5.1650 24 6 3.7822 -2.8715 5.7943 25 6 3.5019 -4.0548 6.7495 26 6 2.5027 -3.5018 7.7417 27 8 2.2334 -4.0068 8.8111 28 7 1.9563 -2.3698 7.2655 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 0.7088 1.1613 -3.4844 33 1 2.2490 -1.6318 1.1525 34 1 2.7546 -1.6100 3.4352 35 1 3.1711 1.9266 3.6021 36 1 3.6123 3.1938 5.6650 37 1 3.5440 2.0586 7.8478 38 1 3.0335 -0.3453 7.9743 39 1 3.9083 -3.2194 4.7690 40 1 4.6531 -2.3037 6.1218 41 1 4.4165 -4.3591 7.2584 42 1 3.0717 -4.8934 6.2020 43 1 1.2937 -1.8413 7.7372 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889166318.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:43 Heat of formation + Delta-G solvation = -58.395635 kcal Electronic energy + Delta-G solvation = -26226.174103 eV Core-core repulsion = 22463.181814 eV Total energy + Delta-G solvation = -3762.992288 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.05976 -41.13542 -39.65804 -37.47959 -36.88317 -35.72993 -34.32612 -32.39876 -32.17238 -31.34587 -29.77870 -27.73368 -27.31400 -24.48718 -23.76967 -22.70822 -21.89719 -21.54679 -21.40101 -19.78041 -18.90922 -18.38696 -17.82095 -17.45667 -16.99321 -16.66128 -16.43774 -15.91106 -15.57202 -15.49807 -15.06220 -14.88968 -14.75129 -14.42181 -14.38804 -14.10168 -13.96216 -13.68488 -13.47337 -12.95878 -12.92592 -12.86937 -12.72027 -12.52849 -12.26313 -12.16280 -12.08676 -11.93447 -11.50035 -11.06776 -10.98386 -10.92798 -10.60146 -10.28422 -9.82606 -9.67843 -8.90597 -8.16223 -6.33107 0.32976 0.46702 1.46665 1.47839 1.56036 1.59143 1.74286 2.18124 2.33779 2.43535 2.88027 3.15179 3.41695 3.42523 3.46426 3.73924 4.00682 4.08096 4.18056 4.25251 4.48795 4.50611 4.62148 4.72013 4.76632 4.88134 4.94383 5.01195 5.07214 5.11796 5.15667 5.29368 5.43101 5.44152 5.56863 5.60249 5.66324 5.70998 5.79968 5.87969 6.00583 6.10955 6.11958 6.26556 6.75318 7.20931 7.22539 7.35866 7.67298 8.90355 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016717 B = 0.003076 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.544534 B = 9100.106282 C =10191.803106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.289 3.711 3 H 0.001 0.999 4 C -0.544 4.544 5 H 0.077 0.923 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.972 3.028 9 H -0.257 1.257 10 H -0.281 1.281 11 H -0.286 1.286 12 N -0.712 5.712 13 C 0.692 3.308 14 O -0.620 6.620 15 N -0.670 5.670 16 C 0.179 3.821 17 C -0.158 4.158 18 C -0.101 4.101 19 C -0.141 4.141 20 C -0.087 4.087 21 C -0.132 4.132 22 C 0.175 3.825 23 H 0.096 0.904 24 C -0.121 4.121 25 C -0.147 4.147 26 C 0.514 3.486 27 O -0.587 6.587 28 N -0.714 5.714 29 H 0.010 0.990 30 H 0.066 0.934 31 H 0.041 0.959 32 H 0.265 0.735 33 H 0.405 0.595 34 H 0.420 0.580 35 H 0.116 0.884 36 H 0.134 0.866 37 H 0.146 0.854 38 H 0.139 0.861 39 H 0.118 0.882 40 H 0.091 0.909 41 H 0.114 0.886 42 H 0.125 0.875 43 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.238 -7.735 17.319 20.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.186 3.814 3 H 0.019 0.981 4 C -0.582 4.582 5 H 0.095 0.905 6 C -0.186 4.186 7 N -0.556 5.556 8 Si 0.797 3.203 9 H -0.181 1.181 10 H -0.207 1.207 11 H -0.212 1.212 12 N -0.364 5.364 13 C 0.392 3.608 14 O -0.500 6.500 15 N -0.318 5.318 16 C 0.083 3.917 17 C -0.179 4.179 18 C -0.119 4.119 19 C -0.160 4.160 20 C -0.105 4.105 21 C -0.136 4.136 22 C 0.070 3.930 23 H 0.113 0.887 24 C -0.159 4.159 25 C -0.187 4.187 26 C 0.302 3.698 27 O -0.468 6.468 28 N -0.368 5.368 29 H 0.029 0.971 30 H 0.085 0.915 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.240 0.760 34 H 0.259 0.741 35 H 0.134 0.866 36 H 0.152 0.848 37 H 0.164 0.836 38 H 0.157 0.843 39 H 0.137 0.863 40 H 0.110 0.890 41 H 0.133 0.867 42 H 0.143 0.857 43 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 6.823 -6.943 17.571 20.087 hybrid contribution -0.305 -0.200 -0.941 1.009 sum 6.518 -7.143 16.631 19.237 Atomic orbital electron populations 1.21930 0.98507 0.99485 0.99498 1.18246 0.90785 0.91739 0.80666 0.98146 1.21566 1.32478 1.13601 0.90534 0.90515 1.25776 0.94908 0.95579 1.02300 1.70062 1.37027 1.23984 1.24530 0.85299 0.78018 0.78558 0.78450 1.18111 1.20662 1.21225 1.45452 1.68694 1.14119 1.08135 1.16261 0.78378 0.85018 0.81132 1.90847 1.58041 1.16384 1.84744 1.42499 1.68294 1.11933 1.09116 1.17394 0.98023 0.91631 0.84694 1.21445 1.02099 0.94150 1.00214 1.21272 0.98211 1.00530 0.91926 1.21339 1.01776 0.94938 0.97931 1.20914 0.98054 0.94054 0.97496 1.19568 1.06824 0.96171 0.91072 1.20524 0.97057 0.90320 0.85100 0.88662 1.22825 0.95879 0.94685 1.02522 1.22407 0.99751 0.99900 0.96653 1.21492 0.81812 0.80352 0.86131 1.90743 1.66540 1.64200 1.25321 1.46338 1.43842 1.26546 1.20086 0.97057 0.91538 0.93996 0.92604 0.75998 0.74133 0.86592 0.84797 0.83591 0.84308 0.86334 0.89039 0.86723 0.85745 0.74893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.61 9.26 71.98 0.67 -5.94 16 2 C 0.29 14.26 2.56 44.25 0.11 14.38 16 3 H 0.00 0.04 7.58 -2.39 -0.02 0.02 16 4 C -0.54 -27.29 8.73 25.60 0.22 -27.06 16 5 H 0.08 3.54 7.74 -2.91 -0.02 3.52 16 6 C 0.01 0.75 5.30 84.65 0.45 1.20 16 7 N -0.92 -51.21 11.32 21.45 0.24 -50.96 16 8 Si 0.97 40.41 29.54 68.60 2.03 42.43 16 9 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 10 H -0.28 -11.53 7.11 99.48 0.71 -10.82 16 11 H -0.29 -11.99 7.11 99.48 0.71 -11.28 16 12 N -0.71 -27.01 5.07 -461.40 -2.34 -29.36 16 13 C 0.69 25.78 8.33 179.06 1.49 27.28 16 14 O -0.62 -28.98 13.17 -4.00 -0.05 -29.04 16 15 N -0.67 -17.18 5.01 -317.19 -1.59 -18.76 16 16 C 0.18 4.58 6.41 38.14 0.24 4.82 16 17 C -0.16 -4.74 8.72 22.39 0.20 -4.55 16 18 C -0.10 -2.36 10.04 22.25 0.22 -2.14 16 19 C -0.14 -2.60 10.04 22.29 0.22 -2.37 16 20 C -0.09 -1.50 9.26 22.25 0.21 -1.30 16 21 C -0.13 -2.46 5.01 -19.74 -0.10 -2.56 16 22 C 0.18 2.36 3.05 44.70 0.14 2.50 16 23 H 0.10 1.24 7.28 -2.39 -0.02 1.22 16 24 C -0.12 -1.06 6.60 31.65 0.21 -0.85 16 25 C -0.15 -1.49 6.86 30.59 0.21 -1.28 16 26 C 0.51 9.48 8.43 87.90 0.74 10.22 16 27 O -0.59 -16.48 18.03 -3.06 -0.06 -16.54 16 28 N -0.71 -10.84 4.73 -442.96 -2.09 -12.93 16 29 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.07 3.59 6.07 -2.39 -0.01 3.58 16 31 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.26 14.00 8.31 -92.70 -0.77 13.23 16 33 H 0.40 12.22 8.56 -92.71 -0.79 11.43 16 34 H 0.42 7.16 7.43 -92.71 -0.69 6.47 16 35 H 0.12 4.38 5.79 -2.91 -0.02 4.36 16 36 H 0.13 2.72 8.06 -2.91 -0.02 2.69 16 37 H 0.15 1.90 8.06 -2.91 -0.02 1.88 16 38 H 0.14 1.96 7.22 -2.91 -0.02 1.94 16 39 H 0.12 0.51 8.10 -2.39 -0.02 0.49 16 40 H 0.09 0.83 7.91 -2.39 -0.02 0.82 16 41 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.41 6.10 8.77 -92.71 -0.81 5.29 16 Total: -1.00 -73.28 356.21 0.15 -73.12 By element: Atomic # 1 Polarization: 30.92 SS G_CDS: -1.22 Total: 29.70 kcal Atomic # 6 Polarization: 7.10 SS G_CDS: 5.24 Total: 12.33 kcal Atomic # 7 Polarization: -106.23 SS G_CDS: -5.78 Total: -112.01 kcal Atomic # 8 Polarization: -45.47 SS G_CDS: -0.11 Total: -45.57 kcal Atomic # 14 Polarization: 40.41 SS G_CDS: 2.03 Total: 42.43 kcal Total: -73.28 0.15 -73.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889166318.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.726 kcal (2) G-P(sol) polarization free energy of solvation -73.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds