Wall clock time and date at job start Tue Mar 31 2020 11:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35977 * 116.99905 * 2 1 4 4 C 1.38717 * 119.98341 * 179.97438 * 3 2 1 5 5 C 1.38094 * 120.01278 * 180.29684 * 4 3 2 6 6 C 1.38846 * 119.98106 * 359.45115 * 5 4 3 7 7 N 1.40116 * 120.01412 * 180.25620 * 6 5 4 8 8 C 1.34772 * 120.00052 * 214.34313 * 7 6 5 9 9 O 1.21295 * 120.00128 * 4.80776 * 8 7 6 10 10 C 1.50693 * 120.00146 * 184.80951 * 8 7 6 11 11 N 1.46897 * 109.47345 * 185.10676 * 10 8 7 12 12 C 1.46902 * 111.00168 * 76.02859 * 11 10 8 13 13 C 1.50697 * 109.47160 * 189.99997 * 12 11 10 14 14 H 1.08000 * 120.00330 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00042 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99790 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00079 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.46884 * 90.00001 * 17 15 13 19 19 H 1.48498 * 109.47203 * 209.99798 * 17 15 13 20 20 H 1.48500 * 109.47096 * 330.00383 * 17 15 13 21 21 C 1.46904 * 111.00222 * 199.98108 * 11 10 8 22 22 C 1.53003 * 109.46903 * 75.65558 * 21 11 10 23 23 C 1.47199 * 109.47209 * 184.39268 * 22 21 11 24 24 N 9.96795 * 117.16323 * 173.49051 * 5 1 2 25 25 C 1.38847 * 119.97187 * 0.54484 * 6 5 4 26 26 C 1.38089 * 119.98481 * 359.73122 * 25 6 5 27 27 H 1.09005 * 109.46550 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47217 * 299.99737 * 1 2 3 29 29 H 1.09000 * 109.46876 * 60.00704 * 1 2 3 30 30 H 1.07994 * 119.99601 * 0.02562 * 4 3 2 31 31 H 1.07998 * 120.00854 * 179.70161 * 5 4 3 32 32 H 0.97000 * 119.99744 * 34.33842 * 7 6 5 33 33 H 1.09008 * 109.47209 * 305.10658 * 10 8 7 34 34 H 1.09005 * 109.47212 * 65.10271 * 10 8 7 35 35 H 1.08996 * 109.47102 * 309.99946 * 12 11 10 36 36 H 1.09000 * 109.47263 * 69.99880 * 12 11 10 37 37 H 0.96999 * 120.00138 * 179.97438 * 16 15 13 38 38 H 1.08993 * 109.47433 * 195.65613 * 21 11 10 39 39 H 1.09004 * 109.47252 * 315.66236 * 21 11 10 40 40 H 1.09001 * 109.47155 * 304.39732 * 22 21 11 41 41 H 1.09010 * 109.46934 * 64.39932 * 22 21 11 42 42 H 1.07994 * 120.00450 * 179.70408 * 25 6 5 43 43 H 1.07996 * 119.99357 * 179.97438 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 3.4316 1.2838 0.0005 5 6 4.0592 2.5139 0.0067 6 6 3.3032 3.6785 0.0009 7 7 3.9392 4.9270 0.0018 8 6 3.3832 5.9661 0.6556 9 8 2.3789 5.8003 1.3152 10 6 4.0092 7.3340 0.5672 11 7 3.2938 8.2584 1.4568 12 6 3.6627 8.0298 2.8603 13 6 2.7402 8.8152 3.7565 14 1 1.9584 9.4237 3.3265 15 6 2.8943 8.7570 5.1254 16 7 3.8466 8.0164 5.6489 17 14 1.7504 9.7300 6.2363 18 1 0.5706 8.8974 6.5830 19 1 2.4707 10.1092 7.4783 20 1 1.3003 10.9567 5.5308 21 6 3.5356 9.6547 1.0698 22 6 2.7185 9.9861 -0.1807 23 6 3.0404 11.3504 -0.6299 24 7 3.2886 12.4037 -0.9722 25 6 1.9166 3.6054 0.0003 26 6 1.2904 2.3747 -0.0001 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8901 30 1 4.0195 0.3779 0.0005 31 1 5.1377 2.5700 0.0120 32 1 4.7798 5.0433 -0.4682 33 1 5.0550 7.2753 0.8692 34 1 3.9473 7.6963 -0.4591 35 1 3.5757 6.9680 3.0905 36 1 4.6905 8.3539 3.0233 37 1 3.9553 7.9757 6.6120 38 1 3.2369 10.3145 1.8843 39 1 4.5958 9.7949 0.8586 40 1 2.9609 9.2764 -0.9717 41 1 1.6556 9.9216 0.0522 42 1 1.3281 4.5109 0.0006 43 1 0.2119 2.3177 -0.0002 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020249260.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:36 Heat of formation + Delta-G solvation = -4.113088 kcal Electronic energy + Delta-G solvation = -25514.487061 eV Core-core repulsion = 21753.848641 eV Total energy + Delta-G solvation = -3760.638420 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.51550 -39.47721 -37.69419 -36.91135 -35.91365 -34.13947 -32.69292 -31.20535 -31.02846 -29.55170 -28.12585 -27.03783 -25.57082 -23.27779 -22.97012 -22.12037 -20.76115 -19.81008 -18.25656 -17.53485 -17.36544 -16.87231 -16.42918 -15.95304 -15.79462 -15.30956 -14.82165 -14.59574 -14.53207 -14.28331 -13.84138 -13.79800 -13.57606 -13.17950 -13.04402 -12.81892 -12.73782 -12.37914 -12.22239 -12.07660 -12.03381 -11.87842 -11.58339 -11.33783 -11.05554 -10.94661 -10.73423 -10.61426 -10.35693 -9.93926 -9.80330 -9.46686 -9.18695 -8.98345 -8.43905 -7.66587 -7.49078 -6.02834 -4.03375 1.29212 1.39529 2.90348 2.94513 2.97006 3.11649 3.25522 3.34167 3.40269 3.42709 3.81671 4.12407 4.43908 4.73748 4.82499 4.90547 4.97421 5.01087 5.08398 5.23195 5.24608 5.32096 5.34347 5.36799 5.43811 5.47289 5.58089 5.61421 5.77536 5.87735 5.99548 6.18137 6.35697 6.37653 6.45952 6.47561 6.88295 7.09821 7.17490 7.34011 7.55330 7.71322 7.75369 7.96858 8.07342 8.41064 8.54044 9.02083 9.60273 11.08371 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.010386 B = 0.003305 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2695.304322 B = 8469.971074 C =10169.209890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.321 6.321 3 C 0.103 3.897 4 C -0.133 4.133 5 C -0.111 4.111 6 C 0.124 3.876 7 N -0.685 5.685 8 C 0.509 3.491 9 O -0.479 6.479 10 C 0.034 3.966 11 N -0.516 5.516 12 C 0.197 3.803 13 C -0.505 4.505 14 H 0.065 0.935 15 C 0.057 3.943 16 N -0.898 5.898 17 Si 0.896 3.104 18 H -0.280 1.280 19 H -0.288 1.288 20 H -0.273 1.273 21 C 0.066 3.934 22 C -0.028 4.028 23 C 0.218 3.782 24 N -0.455 5.455 25 C -0.080 4.080 26 C -0.186 4.186 27 H 0.097 0.903 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.131 0.869 31 H 0.131 0.869 32 H 0.406 0.594 33 H 0.060 0.940 34 H 0.095 0.905 35 H 0.040 0.960 36 H -0.009 1.009 37 H 0.261 0.739 38 H 0.102 0.898 39 H 0.032 0.968 40 H 0.100 0.900 41 H 0.117 0.883 42 H 0.140 0.860 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.827 -12.905 -15.310 20.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.235 6.235 3 C 0.057 3.943 4 C -0.153 4.153 5 C -0.132 4.132 6 C 0.030 3.970 7 N -0.333 5.333 8 C 0.296 3.704 9 O -0.349 6.349 10 C -0.098 4.098 11 N -0.241 5.241 12 C 0.072 3.928 13 C -0.544 4.544 14 H 0.083 0.917 15 C -0.144 4.144 16 N -0.537 5.537 17 Si 0.724 3.276 18 H -0.206 1.206 19 H -0.214 1.214 20 H -0.198 1.198 21 C -0.064 4.064 22 C -0.068 4.068 23 C -0.100 4.100 24 N -0.132 5.132 25 C -0.100 4.100 26 C -0.205 4.205 27 H 0.115 0.885 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.149 0.851 31 H 0.149 0.851 32 H 0.241 0.759 33 H 0.078 0.922 34 H 0.113 0.887 35 H 0.058 0.942 36 H 0.009 0.991 37 H 0.071 0.929 38 H 0.120 0.880 39 H 0.051 0.949 40 H 0.118 0.882 41 H 0.135 0.865 42 H 0.158 0.842 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.555 -11.681 -15.169 19.208 hybrid contribution 0.409 0.296 0.795 0.942 sum -1.147 -11.385 -14.374 18.372 Atomic orbital electron populations 1.23028 0.78602 1.03649 1.01480 1.86045 1.21215 1.27041 1.89208 1.18975 0.92329 0.84086 0.98875 1.20139 0.91275 0.97946 1.05900 1.20707 0.99693 0.90468 1.02298 1.17656 0.91870 0.84954 1.02532 1.43675 1.26535 1.08474 1.54574 1.20989 0.85175 0.85955 0.78328 1.90774 1.23939 1.83665 1.36487 1.21958 0.96851 0.91313 0.99667 1.61759 1.56289 1.00557 1.05463 1.19807 0.94408 0.98415 0.80142 1.21073 1.15398 1.27454 0.90445 0.91685 1.24952 0.95588 0.95731 0.98177 1.69946 1.32128 1.39850 1.11798 0.86522 0.80788 0.80241 0.80004 1.20609 1.21416 1.19829 1.21935 0.96298 0.92061 0.96107 1.19432 1.04178 0.83983 0.99234 1.29324 0.92733 0.95114 0.92784 1.81130 1.09599 1.12511 1.10008 1.21005 0.93203 0.98138 0.97676 1.21128 1.00065 0.91799 1.07550 0.88488 0.92541 0.92755 0.85102 0.85093 0.75890 0.92215 0.88686 0.94177 0.99093 0.92941 0.87982 0.94938 0.88229 0.86515 0.84238 0.85320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.21 16 2 O -0.32 -3.65 10.50 -19.67 -0.21 -3.85 16 3 C 0.10 1.26 6.69 -39.23 -0.26 1.00 16 4 C -0.13 -1.52 9.98 -39.46 -0.39 -1.91 16 5 C -0.11 -1.24 9.96 -39.41 -0.39 -1.64 16 6 C 0.12 1.62 6.27 -83.62 -0.52 1.10 16 7 N -0.68 -8.21 5.34 -9.83 -0.05 -8.27 16 8 C 0.51 7.98 7.13 -10.99 -0.08 7.90 16 9 O -0.48 -9.86 13.23 5.54 0.07 -9.79 16 10 C 0.03 0.48 5.30 -4.98 -0.03 0.45 16 11 N -0.52 -9.47 3.95 -237.51 -0.94 -10.41 16 12 C 0.20 4.77 4.36 -4.98 -0.02 4.75 16 13 C -0.51 -13.58 8.23 -34.44 -0.28 -13.87 16 14 H 0.07 1.71 7.31 -52.49 -0.38 1.33 16 15 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 16 N -0.90 -26.35 13.29 55.43 0.74 -25.61 16 17 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 21 C 0.07 1.02 4.74 -3.82 -0.02 1.00 16 22 C -0.03 -0.32 5.86 -29.52 -0.17 -0.50 16 23 C 0.22 2.97 15.43 -20.79 -0.32 2.65 16 24 N -0.45 -7.37 18.53 42.11 0.78 -6.59 16 25 C -0.08 -1.12 8.65 -39.41 -0.34 -1.46 16 26 C -0.19 -2.32 9.03 -39.46 -0.36 -2.68 16 27 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.43 7.66 -51.93 -0.40 0.03 16 29 H 0.05 0.36 7.66 -51.93 -0.40 -0.04 16 30 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 31 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 32 H 0.41 3.28 8.82 -40.82 -0.36 2.92 16 33 H 0.06 0.79 8.00 -51.92 -0.42 0.37 16 34 H 0.10 0.94 6.44 -51.93 -0.33 0.61 16 35 H 0.04 1.10 6.90 -51.93 -0.36 0.75 16 36 H -0.01 -0.22 8.12 -51.93 -0.42 -0.64 16 37 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 38 H 0.10 1.86 6.58 -51.93 -0.34 1.52 16 39 H 0.03 0.47 8.00 -51.93 -0.42 0.05 16 40 H 0.10 0.89 6.66 -51.93 -0.35 0.55 16 41 H 0.12 1.34 8.14 -51.92 -0.42 0.91 16 42 H 0.14 2.13 6.45 -52.49 -0.34 1.80 16 43 H 0.13 1.35 6.29 -52.49 -0.33 1.02 16 LS Contribution 368.20 15.07 5.55 5.55 Total: -1.00 -34.98 368.20 -7.04 -42.03 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -5.67 Total: 0.97 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: -2.30 Total: -0.52 kcal Atomic # 7 Polarization: -51.40 SS G_CDS: 0.53 Total: -50.88 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: -0.13 Total: -13.64 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.98 -7.04 -42.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020249260.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.912 kcal (2) G-P(sol) polarization free energy of solvation -34.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds