Wall clock time and date at job start Tue Mar 31 2020 11:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35977 * 116.99905 * 2 1 4 4 C 1.38717 * 119.98341 * 179.97438 * 3 2 1 5 5 C 1.38094 * 120.01278 * 180.29684 * 4 3 2 6 6 C 1.38846 * 119.98106 * 359.45115 * 5 4 3 7 7 N 1.40116 * 120.01412 * 180.25620 * 6 5 4 8 8 C 1.34772 * 120.00052 * 214.34313 * 7 6 5 9 9 O 1.21295 * 120.00128 * 4.80776 * 8 7 6 10 10 C 1.50693 * 120.00146 * 184.80951 * 8 7 6 11 11 N 1.46897 * 109.47345 * 185.10676 * 10 8 7 12 12 C 1.46902 * 111.00168 * 76.02859 * 11 10 8 13 13 C 1.50697 * 109.47160 * 189.99997 * 12 11 10 14 14 H 1.08000 * 120.00330 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00042 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99790 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00079 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.46884 * 90.00001 * 17 15 13 19 19 H 1.48498 * 109.47203 * 209.99798 * 17 15 13 20 20 H 1.48500 * 109.47096 * 330.00383 * 17 15 13 21 21 C 1.46904 * 111.00222 * 199.98108 * 11 10 8 22 22 C 1.53003 * 109.46903 * 75.65558 * 21 11 10 23 23 C 1.47199 * 109.47209 * 184.39268 * 22 21 11 24 24 N 9.96795 * 117.16323 * 173.49051 * 5 1 2 25 25 C 1.38847 * 119.97187 * 0.54484 * 6 5 4 26 26 C 1.38089 * 119.98481 * 359.73122 * 25 6 5 27 27 H 1.09005 * 109.46550 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47217 * 299.99737 * 1 2 3 29 29 H 1.09000 * 109.46876 * 60.00704 * 1 2 3 30 30 H 1.07994 * 119.99601 * 0.02562 * 4 3 2 31 31 H 1.07998 * 120.00854 * 179.70161 * 5 4 3 32 32 H 0.97000 * 119.99744 * 34.33842 * 7 6 5 33 33 H 1.09008 * 109.47209 * 305.10658 * 10 8 7 34 34 H 1.09005 * 109.47212 * 65.10271 * 10 8 7 35 35 H 1.08996 * 109.47102 * 309.99946 * 12 11 10 36 36 H 1.09000 * 109.47263 * 69.99880 * 12 11 10 37 37 H 0.96999 * 120.00138 * 179.97438 * 16 15 13 38 38 H 1.08993 * 109.47433 * 195.65613 * 21 11 10 39 39 H 1.09004 * 109.47252 * 315.66236 * 21 11 10 40 40 H 1.09001 * 109.47155 * 304.39732 * 22 21 11 41 41 H 1.09010 * 109.46934 * 64.39932 * 22 21 11 42 42 H 1.07994 * 120.00450 * 179.70408 * 25 6 5 43 43 H 1.07996 * 119.99357 * 179.97438 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 3.4316 1.2838 0.0005 5 6 4.0592 2.5139 0.0067 6 6 3.3032 3.6785 0.0009 7 7 3.9392 4.9270 0.0018 8 6 3.3832 5.9661 0.6556 9 8 2.3789 5.8003 1.3152 10 6 4.0092 7.3340 0.5672 11 7 3.2938 8.2584 1.4568 12 6 3.6627 8.0298 2.8603 13 6 2.7402 8.8152 3.7565 14 1 1.9584 9.4237 3.3265 15 6 2.8943 8.7570 5.1254 16 7 3.8466 8.0164 5.6489 17 14 1.7504 9.7300 6.2363 18 1 0.5706 8.8974 6.5830 19 1 2.4707 10.1092 7.4783 20 1 1.3003 10.9567 5.5308 21 6 3.5356 9.6547 1.0698 22 6 2.7185 9.9861 -0.1807 23 6 3.0404 11.3504 -0.6299 24 7 3.2886 12.4037 -0.9722 25 6 1.9166 3.6054 0.0003 26 6 1.2904 2.3747 -0.0001 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8901 30 1 4.0195 0.3779 0.0005 31 1 5.1377 2.5700 0.0120 32 1 4.7798 5.0433 -0.4682 33 1 5.0550 7.2753 0.8692 34 1 3.9473 7.6963 -0.4591 35 1 3.5757 6.9680 3.0905 36 1 4.6905 8.3539 3.0233 37 1 3.9553 7.9757 6.6120 38 1 3.2369 10.3145 1.8843 39 1 4.5958 9.7949 0.8586 40 1 2.9609 9.2764 -0.9717 41 1 1.6556 9.9216 0.0522 42 1 1.3281 4.5109 0.0006 43 1 0.2119 2.3177 -0.0002 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020249260.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:35 Heat of formation + Delta-G solvation = -28.883661 kcal Electronic energy + Delta-G solvation = -25515.561194 eV Core-core repulsion = 21753.848641 eV Total energy + Delta-G solvation = -3761.712553 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.53475 -40.50453 -38.85038 -38.00614 -37.20641 -35.23803 -34.70167 -32.36026 -32.02079 -30.72918 -29.42930 -28.01379 -26.95661 -24.84452 -24.08195 -23.14743 -22.03894 -21.04537 -19.14276 -18.70480 -18.53378 -18.19943 -17.98969 -16.91642 -16.74356 -16.57037 -16.18822 -16.08978 -15.58496 -15.46134 -15.09871 -14.91687 -14.66016 -14.32608 -14.21605 -14.02743 -13.81525 -13.70543 -13.59598 -13.35445 -13.25293 -12.99766 -12.77319 -12.65192 -12.54014 -12.28050 -12.22129 -11.90828 -11.80710 -11.59406 -11.21789 -10.87880 -10.60562 -10.52191 -9.93779 -8.97863 -8.62851 -8.15151 -6.21635 0.36153 0.42124 1.42352 1.44240 1.53539 1.78039 1.80863 1.88322 2.12429 2.43525 2.45734 2.86704 2.99657 3.19726 3.63116 3.83222 3.95279 4.02986 4.16536 4.28844 4.34480 4.40784 4.41682 4.42404 4.51315 4.54654 4.65295 4.74909 4.76786 4.96804 5.04909 5.10184 5.10948 5.32247 5.37526 5.40460 5.43213 5.53747 5.70373 5.93236 6.11259 6.34213 6.47582 6.49912 6.65467 6.74363 6.93854 7.41776 7.46572 8.96106 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.010386 B = 0.003305 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2695.304322 B = 8469.971074 C =10169.209890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.332 6.332 3 C 0.096 3.904 4 C -0.139 4.139 5 C -0.103 4.103 6 C 0.103 3.897 7 N -0.665 5.665 8 C 0.507 3.493 9 O -0.538 6.538 10 C 0.033 3.967 11 N -0.526 5.526 12 C 0.217 3.783 13 C -0.513 4.513 14 H 0.067 0.933 15 C 0.001 3.999 16 N -0.936 5.936 17 Si 0.959 3.041 18 H -0.280 1.280 19 H -0.285 1.285 20 H -0.261 1.261 21 C 0.067 3.933 22 C -0.012 4.012 23 C 0.244 3.756 24 N -0.500 5.500 25 C -0.100 4.100 26 C -0.195 4.195 27 H 0.121 0.879 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.152 0.848 31 H 0.161 0.839 32 H 0.427 0.573 33 H 0.074 0.926 34 H 0.148 0.852 35 H 0.001 0.999 36 H -0.030 1.030 37 H 0.261 0.739 38 H 0.069 0.931 39 H 0.047 0.953 40 H 0.140 0.860 41 H 0.124 0.876 42 H 0.119 0.881 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.606 -13.460 -17.070 21.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.246 6.246 3 C 0.051 3.949 4 C -0.158 4.158 5 C -0.123 4.123 6 C 0.009 3.991 7 N -0.314 5.314 8 C 0.295 3.705 9 O -0.412 6.412 10 C -0.098 4.098 11 N -0.250 5.250 12 C 0.091 3.909 13 C -0.551 4.551 14 H 0.085 0.915 15 C -0.197 4.197 16 N -0.577 5.577 17 Si 0.784 3.216 18 H -0.206 1.206 19 H -0.211 1.211 20 H -0.185 1.185 21 C -0.062 4.062 22 C -0.052 4.052 23 C -0.073 4.073 24 N -0.178 5.178 25 C -0.121 4.121 26 C -0.214 4.214 27 H 0.140 0.860 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.170 0.830 31 H 0.179 0.821 32 H 0.265 0.735 33 H 0.092 0.908 34 H 0.165 0.835 35 H 0.019 0.981 36 H -0.013 1.013 37 H 0.069 0.931 38 H 0.088 0.912 39 H 0.065 0.935 40 H 0.158 0.842 41 H 0.142 0.858 42 H 0.137 0.863 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -1.307 -12.240 -16.990 20.981 hybrid contribution 0.333 0.341 1.278 1.364 sum -0.974 -11.899 -15.713 19.734 Atomic orbital electron populations 1.23297 0.76900 1.05464 1.01899 1.86034 1.23051 1.26538 1.89021 1.19189 0.92956 0.84297 0.98502 1.20502 0.91274 0.98897 1.05093 1.21007 1.01072 0.89570 1.00693 1.17859 0.91850 0.85809 1.03599 1.43420 1.26855 1.07500 1.53591 1.21331 0.84457 0.87125 0.77623 1.90759 1.26649 1.84579 1.39259 1.22146 0.96647 0.89699 1.01291 1.61489 1.57556 1.02804 1.03186 1.19296 0.92607 0.95309 0.83706 1.21501 1.15430 1.27063 0.91153 0.91509 1.25803 0.97091 0.96847 0.99913 1.70072 1.34006 1.41638 1.11968 0.85540 0.78677 0.79183 0.78175 1.20634 1.21089 1.18525 1.21862 0.97880 0.89750 0.96749 1.19386 1.03789 0.83640 0.98386 1.29494 0.91376 0.94912 0.91501 1.81167 1.11095 1.13879 1.11676 1.20987 0.93946 0.97961 0.99157 1.21263 1.00895 0.91572 1.07683 0.86042 0.92725 0.91742 0.83015 0.82148 0.73459 0.90826 0.83466 0.98067 1.01252 0.93050 0.91241 0.93473 0.84191 0.85790 0.86257 0.84177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 113.37 1.11 1.38 16 2 O -0.33 -7.14 10.50 -93.29 -0.98 -8.12 16 3 C 0.10 2.28 6.69 22.50 0.15 2.43 16 4 C -0.14 -2.92 9.98 22.35 0.22 -2.70 16 5 C -0.10 -2.12 9.96 22.38 0.22 -1.89 16 6 C 0.10 2.61 6.27 38.11 0.24 2.85 16 7 N -0.66 -14.99 5.34 -303.40 -1.62 -16.61 16 8 C 0.51 15.56 7.13 87.66 0.63 16.19 16 9 O -0.54 -22.78 13.23 -3.08 -0.04 -22.82 16 10 C 0.03 0.86 5.30 85.56 0.45 1.31 16 11 N -0.53 -18.92 3.95 -905.36 -3.58 -22.50 16 12 C 0.22 10.79 4.36 85.56 0.37 11.16 16 13 C -0.51 -28.16 8.23 25.60 0.21 -27.95 16 14 H 0.07 3.55 7.31 -2.91 -0.02 3.53 16 15 C 0.00 0.06 5.46 84.66 0.46 0.52 16 16 N -0.94 -56.44 13.29 21.45 0.28 -56.16 16 17 Si 0.96 44.71 29.54 68.60 2.03 46.74 16 18 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 19 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 20 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 21 C 0.07 1.97 4.74 86.30 0.41 2.38 16 22 C -0.01 -0.24 5.86 28.79 0.17 -0.07 16 23 C 0.24 6.08 15.43 89.45 1.38 7.46 16 24 N -0.50 -15.46 18.53 19.99 0.37 -15.09 16 25 C -0.10 -2.86 8.65 22.38 0.19 -2.67 16 26 C -0.19 -4.88 9.03 22.35 0.20 -4.68 16 27 H 0.12 1.09 8.14 -2.38 -0.02 1.07 16 28 H 0.05 0.80 7.66 -2.39 -0.02 0.78 16 29 H 0.06 0.78 7.66 -2.39 -0.02 0.76 16 30 H 0.15 2.50 8.06 -2.91 -0.02 2.48 16 31 H 0.16 2.24 8.06 -2.91 -0.02 2.21 16 32 H 0.43 5.74 8.82 -92.71 -0.82 4.92 16 33 H 0.07 1.77 8.00 -2.38 -0.02 1.75 16 34 H 0.15 2.22 6.44 -2.38 -0.02 2.20 16 35 H 0.00 0.07 6.90 -2.39 -0.02 0.05 16 36 H -0.03 -1.59 8.12 -2.39 -0.02 -1.61 16 37 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 38 H 0.07 2.52 6.58 -2.39 -0.02 2.50 16 39 H 0.05 1.25 8.00 -2.38 -0.02 1.23 16 40 H 0.14 1.79 6.66 -2.39 -0.02 1.77 16 41 H 0.12 2.49 8.14 -2.38 -0.02 2.47 16 42 H 0.12 3.86 6.45 -2.91 -0.02 3.84 16 43 H 0.14 2.98 6.29 -2.91 -0.02 2.96 16 Total: -1.00 -80.35 368.20 3.12 -77.24 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: 0.23 Total: 11.62 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: 6.43 Total: 5.71 kcal Atomic # 7 Polarization: -105.81 SS G_CDS: -4.55 Total: -110.36 kcal Atomic # 8 Polarization: -29.92 SS G_CDS: -1.02 Total: -30.94 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -80.35 3.12 -77.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020249260.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.352 kcal (2) G-P(sol) polarization free energy of solvation -80.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds