Wall clock time and date at job start Tue Mar 31 2020 11:38:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36012 * 116.99936 * 2 1 4 4 C 1.38507 * 120.08094 * 359.97438 * 3 2 1 5 5 C 1.38285 * 120.01794 * 179.97438 * 4 3 2 6 6 C 1.38254 * 120.18247 * 0.02562 * 5 4 3 7 7 C 1.38225 * 120.15880 * 359.97438 * 6 5 4 8 8 C 1.38726 * 119.97943 * 359.97438 * 7 6 5 9 9 N 1.39969 * 120.08726 * 179.97438 * 8 7 6 10 10 C 1.46499 * 120.00063 * 0.02562 * 9 8 7 11 11 C 1.50699 * 109.47124 * 179.97438 * 10 9 8 12 12 O 1.21282 * 119.99850 * 359.97438 * 11 10 9 13 13 N 1.34781 * 119.99878 * 180.02562 * 11 10 9 14 14 C 1.46496 * 119.99786 * 179.97438 * 13 11 10 15 15 C 1.50705 * 109.47248 * 89.99826 * 14 13 11 16 16 H 1.08004 * 120.00055 * 359.97438 * 15 14 13 17 17 C 1.37875 * 120.00254 * 179.97438 * 15 14 13 18 18 N 1.31515 * 119.99570 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00115 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46813 * 60.00302 * 19 17 15 21 21 H 1.48502 * 109.46970 * 179.97438 * 19 17 15 22 22 H 1.48493 * 109.47546 * 300.00209 * 19 17 15 23 23 C 1.46501 * 120.00071 * 359.97438 * 13 11 10 24 24 C 1.53000 * 109.46806 * 90.00500 * 23 13 11 25 25 C 1.47193 * 109.47019 * 180.02562 * 24 23 13 26 26 N 9.33248 * 163.23634 * 32.30098 * 2 1 3 27 27 H 1.09000 * 109.47020 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47206 * 300.00224 * 1 2 3 29 29 H 1.08997 * 109.46745 * 60.00389 * 1 2 3 30 30 H 1.07999 * 119.98747 * 0.25239 * 4 3 2 31 31 H 1.07997 * 119.90793 * 179.97438 * 5 4 3 32 32 H 1.07996 * 119.91798 * 179.97438 * 6 5 4 33 33 H 1.07999 * 120.00480 * 179.97438 * 7 6 5 34 34 H 0.96996 * 119.99633 * 180.02562 * 9 8 7 35 35 H 1.09000 * 109.46950 * 300.00065 * 10 9 8 36 36 H 1.08998 * 109.47411 * 59.99531 * 10 9 8 37 37 H 1.08994 * 109.47217 * 209.99575 * 14 13 11 38 38 H 1.08996 * 109.47474 * 329.99766 * 14 13 11 39 39 H 0.97012 * 119.99487 * 179.97438 * 18 17 15 40 40 H 1.08994 * 109.46952 * 210.00622 * 23 13 11 41 41 H 1.08998 * 109.47048 * 330.00735 * 23 13 11 42 42 H 1.09004 * 109.47060 * 300.00125 * 24 23 13 43 43 H 1.09003 * 109.46855 * 59.99888 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.2937 2.3746 -0.0005 5 6 1.9229 3.6060 0.0000 6 6 3.3034 3.6813 0.0005 7 6 4.0618 2.5257 0.0011 8 6 3.4376 1.2868 0.0016 9 7 4.2034 0.1152 0.0016 10 6 5.6662 0.1962 0.0016 11 6 6.2463 -1.1946 0.0023 12 8 5.5104 -2.1586 0.0031 13 7 7.5830 -1.3672 0.0029 14 6 8.1470 -2.7193 0.0041 15 6 8.3409 -3.1840 -1.4164 16 1 8.0706 -2.5370 -2.2379 17 6 8.8633 -4.4350 -1.6672 18 7 9.1919 -5.2230 -0.6669 19 14 9.1029 -5.0113 -3.4279 20 1 10.0309 -4.0879 -4.1289 21 1 9.6758 -6.3813 -3.4266 22 1 7.7933 -5.0225 -4.1277 23 6 8.4720 -0.2027 0.0024 24 6 8.7810 0.2035 1.4447 25 6 9.6736 1.3739 1.4443 26 7 10.3649 2.2752 1.4384 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 0.2152 2.3193 0.0032 31 1 1.3342 4.5114 -0.0008 32 1 3.7903 4.6452 0.0005 33 1 5.1400 2.5874 0.0011 34 1 3.7656 -0.7503 0.0016 35 1 6.0005 0.7294 -0.8884 36 1 6.0006 0.7294 0.8915 37 1 9.1080 -2.7116 0.5182 38 1 7.4653 -3.3969 0.5181 39 1 9.5591 -6.1034 -0.8434 40 1 9.4000 -0.4543 -0.5110 41 1 7.9852 0.6257 -0.5121 42 1 7.8529 0.4551 1.9581 43 1 9.2677 -0.6250 1.9592 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070922901.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:31 Heat of formation + Delta-G solvation = -11.913748 kcal Electronic energy + Delta-G solvation = -25771.381155 eV Core-core repulsion = 22010.404473 eV Total energy + Delta-G solvation = -3760.976682 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.29364 -39.41157 -37.48559 -36.93034 -35.54505 -34.97999 -32.93153 -30.92398 -30.23982 -30.13235 -27.93449 -27.20147 -26.00688 -24.09470 -22.94961 -22.15268 -21.42123 -18.91837 -18.26191 -17.67517 -17.16161 -16.60614 -16.38622 -15.89801 -15.80431 -15.57041 -15.12537 -14.81464 -14.73156 -14.46896 -14.11248 -13.85836 -13.81332 -13.35494 -13.21226 -12.88979 -12.59600 -12.48615 -12.26919 -12.16622 -12.06417 -11.78125 -11.47954 -11.33380 -11.14939 -11.06575 -11.03647 -10.93542 -10.65275 -10.24516 -10.11296 -9.78773 -9.21189 -8.57596 -8.50906 -7.96964 -7.15279 -6.12968 -4.17987 1.37211 1.57540 2.68707 2.78666 3.11277 3.18142 3.28271 3.32509 3.33220 3.37684 3.74863 3.83014 4.15533 4.38490 4.76550 4.82800 4.89817 4.96604 5.03791 5.05278 5.06476 5.18868 5.22556 5.25409 5.35094 5.38418 5.40831 5.51646 5.55155 5.72879 5.76851 6.01089 6.11070 6.30895 6.56604 6.71643 6.80299 7.06529 7.26279 7.33994 7.52791 7.54620 7.82430 7.90858 8.11066 8.14576 8.70004 8.88005 9.47750 10.95154 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.010686 B = 0.003598 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2619.646394 B = 7779.382395 C = 9735.376007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.318 6.318 3 C 0.052 3.948 4 C -0.163 4.163 5 C -0.150 4.150 6 C -0.104 4.104 7 C -0.175 4.175 8 C 0.205 3.795 9 N -0.727 5.727 10 C 0.102 3.898 11 C 0.503 3.497 12 O -0.526 6.526 13 N -0.592 5.592 14 C 0.245 3.755 15 C -0.532 4.532 16 H 0.058 0.942 17 C 0.064 3.936 18 N -0.893 5.893 19 Si 0.898 3.102 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.276 1.276 23 C 0.115 3.885 24 C -0.051 4.051 25 C 0.216 3.784 26 N -0.443 5.443 27 H 0.097 0.903 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.124 0.876 31 H 0.117 0.883 32 H 0.120 0.880 33 H 0.127 0.873 34 H 0.417 0.583 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.037 0.963 38 H 0.047 0.953 39 H 0.265 0.735 40 H 0.097 0.903 41 H 0.077 0.923 42 H 0.107 0.893 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.446 15.256 3.648 20.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.232 6.232 3 C 0.004 3.996 4 C -0.182 4.182 5 C -0.170 4.170 6 C -0.123 4.123 7 C -0.199 4.199 8 C 0.101 3.899 9 N -0.361 5.361 10 C -0.026 4.026 11 C 0.288 3.712 12 O -0.402 6.402 13 N -0.324 5.324 14 C 0.127 3.873 15 C -0.570 4.570 16 H 0.076 0.924 17 C -0.139 4.139 18 N -0.532 5.532 19 Si 0.725 3.275 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.202 1.202 23 C -0.012 4.012 24 C -0.093 4.093 25 C -0.102 4.102 26 N -0.121 5.121 27 H 0.115 0.885 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.142 0.858 31 H 0.135 0.865 32 H 0.138 0.862 33 H 0.145 0.855 34 H 0.257 0.743 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.055 0.945 38 H 0.065 0.935 39 H 0.074 0.926 40 H 0.116 0.884 41 H 0.095 0.905 42 H 0.125 0.875 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -11.424 15.657 3.684 19.729 hybrid contribution -0.400 -0.863 -0.973 1.361 sum -11.824 14.794 2.711 19.132 Atomic orbital electron populations 1.22966 0.78723 1.03693 1.00840 1.86049 1.20985 1.26440 1.89717 1.18464 0.90342 0.84963 1.05874 1.20957 0.99397 0.91911 1.05947 1.20635 0.94545 0.96574 1.05259 1.20782 0.93667 0.97596 1.00230 1.20509 0.99838 0.90174 1.09368 1.17207 0.87157 0.87595 0.97959 1.44353 1.03521 1.06708 1.81479 1.21203 0.82212 0.96539 1.02654 1.20209 0.83092 0.90201 0.77661 1.90699 1.58470 1.41790 1.49247 1.48171 1.04143 1.08779 1.71272 1.19386 0.94202 0.75952 0.97790 1.21367 1.42555 1.00937 0.92191 0.92373 1.24909 0.95240 0.96307 0.97433 1.69911 1.42960 1.09487 1.30800 0.86565 0.78516 0.77795 0.84611 1.20205 1.21166 1.20160 1.21362 0.97260 0.89305 0.93246 1.19896 0.97064 0.90888 1.01419 1.29053 0.93753 0.94174 0.93187 1.81210 1.10373 1.11937 1.08530 0.88454 0.93032 0.93011 0.85803 0.86475 0.86200 0.85492 0.74327 0.89709 0.89905 0.94492 0.93468 0.92555 0.88422 0.90512 0.87533 0.86364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.81 101.05 0.99 1.28 16 2 O -0.32 -4.18 9.74 -19.78 -0.19 -4.37 16 3 C 0.05 0.67 6.70 -39.08 -0.26 0.41 16 4 C -0.16 -1.75 9.04 -39.47 -0.36 -2.11 16 5 C -0.15 -1.49 10.04 -39.56 -0.40 -1.89 16 6 C -0.10 -1.05 10.04 -39.58 -0.40 -1.45 16 7 C -0.18 -2.00 9.31 -39.41 -0.37 -2.37 16 8 C 0.21 2.75 6.67 -83.56 -0.56 2.19 16 9 N -0.73 -10.62 5.70 -59.67 -0.34 -10.96 16 10 C 0.10 1.34 3.95 -5.19 -0.02 1.32 16 11 C 0.50 8.95 7.74 -10.98 -0.09 8.86 16 12 O -0.53 -11.85 15.25 5.56 0.08 -11.77 16 13 N -0.59 -10.33 2.46 -175.07 -0.43 -10.76 16 14 C 0.25 5.64 5.16 -5.19 -0.03 5.62 16 15 C -0.53 -13.95 9.39 -34.44 -0.32 -14.27 16 16 H 0.06 1.53 7.81 -52.48 -0.41 1.12 16 17 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 18 N -0.89 -25.18 13.29 55.43 0.74 -24.44 16 19 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 20 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 21 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 C 0.11 1.42 5.17 -4.04 -0.02 1.40 16 24 C -0.05 -0.50 6.03 -29.52 -0.18 -0.68 16 25 C 0.22 2.48 15.43 -20.77 -0.32 2.16 16 26 N -0.44 -6.29 18.54 42.15 0.78 -5.51 16 27 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.05 0.37 7.66 -51.93 -0.40 -0.02 16 29 H 0.05 0.39 7.67 -51.93 -0.40 -0.01 16 30 H 0.12 1.05 6.30 -52.49 -0.33 0.72 16 31 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 32 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 33 H 0.13 1.23 6.74 -52.49 -0.35 0.88 16 34 H 0.42 6.98 6.80 -40.82 -0.28 6.71 16 35 H 0.09 0.99 7.21 -51.93 -0.37 0.61 16 36 H 0.08 0.85 6.99 -51.93 -0.36 0.49 16 37 H 0.04 0.84 8.07 -51.93 -0.42 0.42 16 38 H 0.05 1.25 7.42 -51.93 -0.39 0.86 16 39 H 0.26 7.13 8.31 -40.81 -0.34 6.79 16 40 H 0.10 1.31 8.07 -51.93 -0.42 0.89 16 41 H 0.08 0.77 6.44 -51.93 -0.33 0.43 16 42 H 0.11 0.83 7.22 -51.93 -0.37 0.45 16 43 H 0.12 1.15 8.14 -51.93 -0.42 0.72 16 LS Contribution 370.88 15.07 5.59 5.59 Total: -1.00 -33.19 370.88 -6.87 -40.06 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -5.66 Total: 4.03 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: -2.42 Total: 2.11 kcal Atomic # 7 Polarization: -52.42 SS G_CDS: 0.75 Total: -51.67 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: -0.11 Total: -16.14 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.19 -6.87 -40.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070922901.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.147 kcal (2) G-P(sol) polarization free energy of solvation -33.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds