Wall clock time and date at job start Tue Mar 31 2020 11:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36012 * 116.99936 * 2 1 4 4 C 1.38507 * 120.08094 * 359.97438 * 3 2 1 5 5 C 1.38285 * 120.01794 * 179.97438 * 4 3 2 6 6 C 1.38254 * 120.18247 * 0.02562 * 5 4 3 7 7 C 1.38225 * 120.15880 * 359.97438 * 6 5 4 8 8 C 1.38726 * 119.97943 * 359.97438 * 7 6 5 9 9 N 1.39969 * 120.08726 * 179.97438 * 8 7 6 10 10 C 1.46499 * 120.00063 * 0.02562 * 9 8 7 11 11 C 1.50699 * 109.47124 * 179.97438 * 10 9 8 12 12 O 1.21282 * 119.99850 * 359.97438 * 11 10 9 13 13 N 1.34781 * 119.99878 * 180.02562 * 11 10 9 14 14 C 1.46496 * 119.99786 * 179.97438 * 13 11 10 15 15 C 1.50705 * 109.47248 * 89.99826 * 14 13 11 16 16 H 1.08004 * 120.00055 * 359.97438 * 15 14 13 17 17 C 1.37875 * 120.00254 * 179.97438 * 15 14 13 18 18 N 1.31515 * 119.99570 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00115 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46813 * 60.00302 * 19 17 15 21 21 H 1.48502 * 109.46970 * 179.97438 * 19 17 15 22 22 H 1.48493 * 109.47546 * 300.00209 * 19 17 15 23 23 C 1.46501 * 120.00071 * 359.97438 * 13 11 10 24 24 C 1.53000 * 109.46806 * 90.00500 * 23 13 11 25 25 C 1.47193 * 109.47019 * 180.02562 * 24 23 13 26 26 N 9.33248 * 163.23634 * 32.30098 * 2 1 3 27 27 H 1.09000 * 109.47020 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47206 * 300.00224 * 1 2 3 29 29 H 1.08997 * 109.46745 * 60.00389 * 1 2 3 30 30 H 1.07999 * 119.98747 * 0.25239 * 4 3 2 31 31 H 1.07997 * 119.90793 * 179.97438 * 5 4 3 32 32 H 1.07996 * 119.91798 * 179.97438 * 6 5 4 33 33 H 1.07999 * 120.00480 * 179.97438 * 7 6 5 34 34 H 0.96996 * 119.99633 * 180.02562 * 9 8 7 35 35 H 1.09000 * 109.46950 * 300.00065 * 10 9 8 36 36 H 1.08998 * 109.47411 * 59.99531 * 10 9 8 37 37 H 1.08994 * 109.47217 * 209.99575 * 14 13 11 38 38 H 1.08996 * 109.47474 * 329.99766 * 14 13 11 39 39 H 0.97012 * 119.99487 * 179.97438 * 18 17 15 40 40 H 1.08994 * 109.46952 * 210.00622 * 23 13 11 41 41 H 1.08998 * 109.47048 * 330.00735 * 23 13 11 42 42 H 1.09004 * 109.47060 * 300.00125 * 24 23 13 43 43 H 1.09003 * 109.46855 * 59.99888 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.2937 2.3746 -0.0005 5 6 1.9229 3.6060 0.0000 6 6 3.3034 3.6813 0.0005 7 6 4.0618 2.5257 0.0011 8 6 3.4376 1.2868 0.0016 9 7 4.2034 0.1152 0.0016 10 6 5.6662 0.1962 0.0016 11 6 6.2463 -1.1946 0.0023 12 8 5.5104 -2.1586 0.0031 13 7 7.5830 -1.3672 0.0029 14 6 8.1470 -2.7193 0.0041 15 6 8.3409 -3.1840 -1.4164 16 1 8.0706 -2.5370 -2.2379 17 6 8.8633 -4.4350 -1.6672 18 7 9.1919 -5.2230 -0.6669 19 14 9.1029 -5.0113 -3.4279 20 1 10.0309 -4.0879 -4.1289 21 1 9.6758 -6.3813 -3.4266 22 1 7.7933 -5.0225 -4.1277 23 6 8.4720 -0.2027 0.0024 24 6 8.7810 0.2035 1.4447 25 6 9.6736 1.3739 1.4443 26 7 10.3649 2.2752 1.4384 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 0.2152 2.3193 0.0032 31 1 1.3342 4.5114 -0.0008 32 1 3.7903 4.6452 0.0005 33 1 5.1400 2.5874 0.0011 34 1 3.7656 -0.7503 0.0016 35 1 6.0005 0.7294 -0.8884 36 1 6.0006 0.7294 0.8915 37 1 9.1080 -2.7116 0.5182 38 1 7.4653 -3.3969 0.5181 39 1 9.5591 -6.1034 -0.8434 40 1 9.4000 -0.4543 -0.5110 41 1 7.9852 0.6257 -0.5121 42 1 7.8529 0.4551 1.9581 43 1 9.2677 -0.6250 1.9592 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070922901.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:30 Heat of formation + Delta-G solvation = -33.430200 kcal Electronic energy + Delta-G solvation = -25772.314179 eV Core-core repulsion = 22010.404473 eV Total energy + Delta-G solvation = -3761.909706 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.24243 -40.67206 -38.34866 -37.99831 -36.80836 -36.05637 -34.84418 -32.18538 -31.22587 -30.95352 -29.39549 -28.00110 -27.27340 -25.32519 -24.51385 -23.00233 -22.37316 -20.14754 -19.26852 -18.77787 -18.34685 -18.14316 -17.63270 -16.95898 -16.76587 -16.65560 -16.36029 -16.19426 -15.70918 -15.53600 -15.03132 -15.01238 -14.85695 -14.48461 -14.21979 -14.07144 -13.94722 -13.56074 -13.52312 -13.34902 -13.17060 -12.91472 -12.85130 -12.70872 -12.52137 -12.25376 -12.17135 -11.91350 -11.86347 -11.79824 -11.69857 -11.00413 -10.69884 -10.58503 -9.53251 -9.38339 -8.18637 -8.07150 -6.30582 0.56574 0.74975 1.40250 1.43048 1.49537 1.65219 1.80921 1.87536 2.09607 2.40953 2.47160 2.73325 3.01722 3.10897 3.15512 3.67349 3.99717 4.04832 4.12305 4.18848 4.32913 4.36401 4.39673 4.43854 4.48074 4.62392 4.63921 4.74550 4.76554 4.84808 4.97094 5.06521 5.10664 5.30948 5.33216 5.54124 5.58524 5.77949 5.84365 5.98510 6.11828 6.17827 6.56136 6.64030 6.73801 6.79323 6.85083 7.29408 7.44225 8.88069 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.010686 B = 0.003598 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2619.646394 B = 7779.382395 C = 9735.376007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.348 6.348 3 C 0.028 3.972 4 C -0.167 4.167 5 C -0.149 4.149 6 C -0.107 4.107 7 C -0.177 4.177 8 C 0.177 3.823 9 N -0.743 5.743 10 C 0.116 3.884 11 C 0.497 3.503 12 O -0.584 6.584 13 N -0.591 5.591 14 C 0.260 3.740 15 C -0.542 4.542 16 H 0.054 0.946 17 C 0.012 3.988 18 N -0.925 5.925 19 Si 0.956 3.044 20 H -0.262 1.262 21 H -0.282 1.282 22 H -0.281 1.281 23 C 0.109 3.891 24 C -0.039 4.039 25 C 0.246 3.754 26 N -0.488 5.488 27 H 0.106 0.894 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.143 0.857 31 H 0.143 0.857 32 H 0.146 0.854 33 H 0.145 0.855 34 H 0.403 0.597 35 H 0.107 0.893 36 H 0.120 0.880 37 H 0.038 0.962 38 H 0.004 0.996 39 H 0.265 0.735 40 H 0.088 0.912 41 H 0.110 0.890 42 H 0.137 0.863 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.825 18.108 3.257 22.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.263 6.263 3 C -0.020 4.020 4 C -0.186 4.186 5 C -0.169 4.169 6 C -0.126 4.126 7 C -0.200 4.200 8 C 0.075 3.925 9 N -0.376 5.376 10 C -0.012 4.012 11 C 0.286 3.714 12 O -0.463 6.463 13 N -0.321 5.321 14 C 0.139 3.861 15 C -0.581 4.581 16 H 0.072 0.928 17 C -0.187 4.187 18 N -0.565 5.565 19 Si 0.782 3.218 20 H -0.187 1.187 21 H -0.208 1.208 22 H -0.207 1.207 23 C -0.015 4.015 24 C -0.080 4.080 25 C -0.071 4.071 26 N -0.166 5.166 27 H 0.124 0.876 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.160 0.840 31 H 0.161 0.839 32 H 0.164 0.836 33 H 0.163 0.837 34 H 0.239 0.761 35 H 0.124 0.876 36 H 0.137 0.863 37 H 0.056 0.944 38 H 0.022 0.978 39 H 0.074 0.926 40 H 0.106 0.894 41 H 0.128 0.872 42 H 0.154 0.846 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -11.785 18.595 3.293 22.260 hybrid contribution -0.374 -1.702 -0.835 1.932 sum -12.159 16.893 2.458 20.958 Atomic orbital electron populations 1.23194 0.76953 1.04757 1.01989 1.86010 1.23051 1.27219 1.90014 1.18811 0.90774 0.85572 1.06845 1.21248 1.00429 0.91596 1.05322 1.21040 0.95015 0.97155 1.03688 1.21155 0.93881 0.98330 0.99220 1.20808 1.00958 0.89685 1.08566 1.17532 0.87547 0.87780 0.99660 1.44388 1.03889 1.06528 1.82801 1.21248 0.81628 0.93066 1.05228 1.21064 0.82596 0.91698 0.76060 1.90674 1.59815 1.44159 1.51700 1.48009 1.04929 1.08204 1.70975 1.18832 0.93194 0.78396 0.95680 1.21731 1.41750 1.01058 0.93558 0.92779 1.25704 0.95258 0.96652 1.01085 1.70017 1.44017 1.09811 1.32638 0.85634 0.78273 0.77671 0.80237 1.18693 1.20760 1.20682 1.21612 0.96299 0.88209 0.95375 1.19830 0.98099 0.90274 0.99791 1.29081 0.92750 0.93486 0.91800 1.81256 1.11827 1.13556 1.09925 0.87596 0.91706 0.91898 0.83954 0.83918 0.83586 0.83697 0.76122 0.87561 0.86274 0.94360 0.97784 0.92560 0.89401 0.87157 0.84561 0.86124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 9.81 113.37 1.11 1.54 16 2 O -0.35 -9.30 9.74 -93.69 -0.91 -10.21 16 3 C 0.03 0.71 6.70 22.59 0.15 0.86 16 4 C -0.17 -3.27 9.04 22.35 0.20 -3.07 16 5 C -0.15 -2.50 10.04 22.28 0.22 -2.28 16 6 C -0.11 -1.80 10.04 22.27 0.22 -1.58 16 7 C -0.18 -3.53 9.31 22.38 0.21 -3.32 16 8 C 0.18 4.55 6.67 38.22 0.25 4.81 16 9 N -0.74 -21.38 5.70 -342.69 -1.95 -23.34 16 10 C 0.12 2.80 3.95 85.63 0.34 3.13 16 11 C 0.50 17.64 7.74 87.66 0.68 18.32 16 12 O -0.58 -27.42 15.25 -3.04 -0.05 -27.47 16 13 N -0.59 -20.35 2.46 -826.17 -2.03 -22.38 16 14 C 0.26 12.29 5.16 85.64 0.44 12.73 16 15 C -0.54 -28.93 9.39 25.60 0.24 -28.69 16 16 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 17 C 0.01 0.68 5.46 84.65 0.46 1.14 16 18 N -0.93 -53.31 13.29 21.45 0.28 -53.03 16 19 Si 0.96 43.45 29.54 68.60 2.03 45.48 16 20 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 21 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 22 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 23 C 0.11 2.47 5.17 86.38 0.45 2.91 16 24 C -0.04 -0.65 6.03 28.79 0.17 -0.47 16 25 C 0.25 5.00 15.43 89.44 1.38 6.38 16 26 N -0.49 -12.89 18.54 20.00 0.37 -12.52 16 27 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.06 0.88 7.66 -2.39 -0.02 0.86 16 29 H 0.06 0.88 7.67 -2.39 -0.02 0.86 16 30 H 0.14 2.11 6.30 -2.91 -0.02 2.09 16 31 H 0.14 1.62 8.06 -2.91 -0.02 1.60 16 32 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 33 H 0.15 2.22 6.74 -2.91 -0.02 2.20 16 34 H 0.40 14.00 6.80 -92.71 -0.63 13.37 16 35 H 0.11 2.12 7.21 -2.39 -0.02 2.11 16 36 H 0.12 1.99 6.99 -2.39 -0.02 1.97 16 37 H 0.04 1.78 8.07 -2.39 -0.02 1.76 16 38 H 0.00 0.23 7.42 -2.39 -0.02 0.21 16 39 H 0.27 14.56 8.31 -92.70 -0.77 13.78 16 40 H 0.09 2.21 8.07 -2.39 -0.02 2.19 16 41 H 0.11 1.78 6.44 -2.39 -0.02 1.77 16 42 H 0.14 1.55 7.22 -2.38 -0.02 1.54 16 43 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -75.99 370.88 4.69 -71.29 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: 0.41 Total: 19.75 kcal Atomic # 6 Polarization: 5.88 SS G_CDS: 6.54 Total: 12.41 kcal Atomic # 7 Polarization: -107.94 SS G_CDS: -3.33 Total: -111.26 kcal Atomic # 8 Polarization: -36.72 SS G_CDS: -0.96 Total: -37.68 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -75.99 4.69 -71.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070922901.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.864 kcal (2) G-P(sol) polarization free energy of solvation -75.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds