Wall clock time and date at job start Tue Mar 31 2020 11:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42903 * 113.99887 * 2 1 4 4 C 1.52993 * 109.47647 * 184.92478 * 3 2 1 5 5 N 1.46898 * 109.47125 * 52.50172 * 4 3 2 6 6 C 1.46904 * 111.00457 * 200.74077 * 5 4 3 7 7 C 1.50707 * 109.46426 * 66.04552 * 6 5 4 8 8 H 1.07993 * 120.00451 * 0.02562 * 7 6 5 9 9 C 1.37878 * 119.99348 * 180.02562 * 7 6 5 10 10 N 1.31522 * 119.99733 * 180.02562 * 9 7 6 11 11 Si 1.86795 * 120.00365 * 359.97438 * 9 7 6 12 12 H 1.48501 * 109.47192 * 90.00405 * 11 9 7 13 13 H 1.48510 * 109.47232 * 210.00333 * 11 9 7 14 14 H 1.48502 * 109.47120 * 330.00050 * 11 9 7 15 15 C 1.46907 * 110.99920 * 76.79015 * 5 4 3 16 16 C 1.50696 * 109.47032 * 201.05886 * 15 5 4 17 17 O 1.21279 * 120.00263 * 7.68042 * 16 15 5 18 18 N 1.34778 * 120.00154 * 187.67801 * 16 15 5 19 19 C 1.39543 * 120.00302 * 184.04961 * 18 16 15 20 20 C 1.39105 * 119.92119 * 153.06612 * 19 18 16 21 21 C 1.37686 * 120.08184 * 180.02562 * 20 19 18 22 22 C 1.39773 * 119.92157 * 359.97438 * 21 20 19 23 23 C 1.43196 * 120.07980 * 179.97438 * 22 21 20 24 24 N 9.75002 * 95.90415 * 140.31237 * 5 1 2 25 25 C 1.39770 * 119.83964 * 0.24669 * 22 21 20 26 26 C 1.37699 * 119.91933 * 359.53993 * 25 22 21 27 27 H 1.08993 * 109.47468 * 304.92674 * 1 2 3 28 28 H 1.08999 * 109.46906 * 64.93555 * 1 2 3 29 29 H 1.09007 * 109.46538 * 184.93134 * 1 2 3 30 30 H 1.08997 * 109.47441 * 64.92167 * 3 2 1 31 31 H 1.09005 * 109.46900 * 304.92455 * 3 2 1 32 32 H 1.09002 * 109.47446 * 292.50212 * 4 3 2 33 33 H 1.09002 * 109.47468 * 172.49972 * 4 3 2 34 34 H 1.08992 * 109.47335 * 186.04850 * 6 5 4 35 35 H 1.08996 * 109.47320 * 306.05228 * 6 5 4 36 36 H 0.96992 * 119.99749 * 179.97438 * 10 9 7 37 37 H 1.08997 * 109.46986 * 81.05598 * 15 5 4 38 38 H 1.08999 * 109.47026 * 321.05611 * 15 5 4 39 39 H 0.97000 * 119.99673 * 4.05647 * 18 16 15 40 40 H 1.08002 * 119.95321 * 0.02562 * 20 19 18 41 41 H 1.08004 * 120.04239 * 179.97438 * 21 20 19 42 42 H 1.07997 * 120.04219 * 179.74642 * 25 22 21 43 43 H 1.07998 * 119.96589 * 180.20765 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5305 1.1870 -0.1238 5 7 3.8634 0.3474 -1.2823 6 6 5.2242 -0.1939 -1.1666 7 6 5.2875 -1.1484 -0.0020 8 1 4.4052 -1.3345 0.5923 9 6 6.4720 -1.7840 0.3047 10 7 6.5273 -2.6173 1.3207 11 14 7.9979 -1.4626 -0.7237 12 1 8.7508 -0.3192 -0.1484 13 1 8.8590 -2.6726 -0.7234 14 1 7.5972 -1.1408 -2.1169 15 6 3.6985 1.0928 -2.5375 16 6 3.5354 0.1234 -3.6796 17 8 3.4147 -1.0624 -3.4560 18 7 3.5235 0.5743 -4.9497 19 6 3.2880 -0.3111 -6.0023 20 6 2.7285 0.1536 -7.1880 21 6 2.4943 -0.7172 -8.2285 22 6 2.8199 -2.0696 -8.0924 23 6 2.5772 -2.9784 -9.1722 24 7 2.3849 -3.6994 -10.0287 25 6 3.3776 -2.5340 -6.8979 26 6 3.6131 -1.6565 -5.8631 27 1 -0.3634 0.5883 0.8425 28 1 -0.3633 0.4354 -0.9309 29 1 -0.3633 -1.0240 0.0883 30 1 1.7601 1.8146 0.9307 31 1 1.6204 1.8767 -0.8426 32 1 3.9346 0.7339 0.7814 33 1 3.9625 2.1788 -0.2577 34 1 5.4844 -0.7221 -2.0838 35 1 5.9277 0.6228 -1.0055 36 1 7.3604 -3.0647 1.5361 37 1 4.5782 1.7129 -2.7100 38 1 2.8145 1.7269 -2.4700 39 1 3.6787 1.5142 -5.1321 40 1 2.4776 1.1989 -7.2925 41 1 2.0595 -0.3557 -9.1486 42 1 3.6266 -3.5791 -6.7878 43 1 4.0472 -2.0139 -4.9410 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071223845.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:56 Heat of formation + Delta-G solvation = 4.129965 kcal Electronic energy + Delta-G solvation = -25950.190475 eV Core-core repulsion = 22189.909500 eV Total energy + Delta-G solvation = -3760.280975 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.66656 -38.89914 -37.72562 -36.62501 -35.96813 -34.67851 -32.47229 -31.26875 -30.68365 -29.71187 -28.49784 -26.21608 -25.25188 -23.58569 -23.11520 -22.09125 -20.84250 -19.81276 -19.09182 -17.91430 -17.11408 -16.81677 -15.99346 -15.91550 -15.38327 -15.02792 -14.83030 -14.52269 -14.44150 -14.28238 -14.07824 -13.78582 -13.65649 -13.52729 -13.33012 -12.90437 -12.60862 -12.49147 -12.46859 -12.34432 -12.10921 -11.77860 -11.42442 -11.32998 -11.19978 -10.71906 -10.65297 -10.48135 -10.05297 -9.82788 -9.52960 -9.28051 -9.18650 -9.09795 -8.52452 -8.23545 -7.45905 -5.98558 -3.94602 0.59468 1.18297 2.54233 2.58018 2.87826 3.00743 3.28535 3.37809 3.38247 3.75768 3.79396 4.21735 4.45607 4.55467 4.63458 4.67953 4.87522 5.05099 5.25562 5.29496 5.32508 5.38529 5.41080 5.45801 5.47011 5.63820 5.69175 5.72048 5.75285 5.88549 5.93568 6.00487 6.10497 6.19707 6.30306 6.52167 6.76213 6.80998 6.87966 7.27933 7.36423 7.56654 7.67659 7.81677 7.96987 8.28675 8.70169 9.15563 9.62655 11.14799 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.010548 B = 0.003779 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2653.960624 B = 7407.435440 C = 8974.410563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.353 6.353 3 C 0.069 3.931 4 C 0.059 3.941 5 N -0.495 5.495 6 C 0.165 3.835 7 C -0.499 4.499 8 H 0.086 0.914 9 C 0.068 3.932 10 N -0.900 5.900 11 Si 0.871 3.129 12 H -0.279 1.279 13 H -0.286 1.286 14 H -0.269 1.269 15 C 0.036 3.964 16 C 0.507 3.493 17 O -0.465 6.465 18 N -0.682 5.682 19 C 0.193 3.807 20 C -0.162 4.162 21 C -0.048 4.048 22 C -0.066 4.066 23 C 0.263 3.737 24 N -0.433 5.433 25 C -0.043 4.043 26 C -0.139 4.139 27 H 0.031 0.969 28 H 0.030 0.970 29 H 0.081 0.919 30 H 0.044 0.956 31 H 0.033 0.967 32 H 0.106 0.894 33 H 0.039 0.961 34 H 0.031 0.969 35 H -0.019 1.019 36 H 0.262 0.738 37 H 0.057 0.943 38 H 0.096 0.904 39 H 0.410 0.590 40 H 0.134 0.866 41 H 0.133 0.867 42 H 0.135 0.865 43 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.824 13.387 -13.055 20.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.270 6.270 3 C -0.009 4.009 4 C -0.069 4.069 5 N -0.219 5.219 6 C 0.039 3.961 7 C -0.538 4.538 8 H 0.104 0.896 9 C -0.133 4.133 10 N -0.539 5.539 11 Si 0.699 3.301 12 H -0.205 1.205 13 H -0.212 1.212 14 H -0.194 1.194 15 C -0.096 4.096 16 C 0.294 3.706 17 O -0.333 6.333 18 N -0.327 5.327 19 C 0.096 3.904 20 C -0.183 4.183 21 C -0.069 4.069 22 C -0.071 4.071 23 C -0.052 4.052 24 N -0.109 5.109 25 C -0.065 4.065 26 C -0.160 4.160 27 H 0.050 0.950 28 H 0.049 0.951 29 H 0.099 0.901 30 H 0.062 0.938 31 H 0.051 0.949 32 H 0.124 0.876 33 H 0.057 0.943 34 H 0.049 0.951 35 H -0.001 1.001 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.114 0.886 39 H 0.246 0.754 40 H 0.152 0.848 41 H 0.151 0.849 42 H 0.153 0.847 43 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -9.288 10.725 -13.973 19.914 hybrid contribution 1.333 1.843 -0.331 2.298 sum -7.955 12.568 -14.304 20.636 Atomic orbital electron populations 1.22672 0.83007 1.02249 0.98656 1.88232 1.17501 1.26379 1.94900 1.22579 0.94737 0.85264 0.98283 1.22155 0.92853 0.95088 0.96795 1.61550 1.30047 1.32682 0.97624 1.20256 0.82690 0.94174 0.98971 1.21002 0.97754 1.23455 1.11570 0.89554 1.24875 0.98400 0.95030 0.94983 1.69893 1.26782 1.29049 1.28172 0.86934 0.83859 0.77875 0.81430 1.20500 1.21172 1.19406 1.21956 1.01986 0.94188 0.91501 1.21182 0.75954 0.90751 0.82688 1.90712 1.43015 1.16397 1.83212 1.43779 1.71586 1.11848 1.05514 1.18114 0.93972 0.90711 0.87653 1.20716 1.03713 1.00626 0.93237 1.20834 0.96676 0.90839 0.98533 1.16003 1.08923 0.91178 0.90966 1.25751 0.93236 0.93212 0.92968 1.81240 1.09657 1.09281 1.10679 1.21157 0.94533 1.00353 0.90413 1.21751 1.01328 0.91842 1.01042 0.95032 0.95103 0.90053 0.93758 0.94925 0.87612 0.94348 0.95055 1.00149 0.92780 0.92518 0.88642 0.75428 0.84811 0.84947 0.84703 0.81692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 101.05 1.11 1.53 16 2 O -0.35 -6.37 10.41 -35.23 -0.37 -6.74 16 3 C 0.07 1.01 6.07 37.15 0.23 1.24 16 4 C 0.06 1.01 5.24 -3.83 -0.02 0.99 16 5 N -0.49 -9.64 3.63 -237.52 -0.86 -10.50 16 6 C 0.16 3.85 3.45 -4.97 -0.02 3.83 16 7 C -0.50 -14.08 8.77 -34.44 -0.30 -14.38 16 8 H 0.09 2.71 7.57 -52.49 -0.40 2.31 16 9 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 10 N -0.90 -27.65 13.96 55.43 0.77 -26.87 16 11 Si 0.87 21.36 27.47 -169.99 -4.67 16.69 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 13 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 14 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 15 C 0.04 0.51 5.30 -4.97 -0.03 0.48 16 16 C 0.51 7.59 7.23 -10.99 -0.08 7.51 16 17 O -0.46 -9.18 12.69 5.56 0.07 -9.11 16 18 N -0.68 -7.10 5.34 -9.85 -0.05 -7.15 16 19 C 0.19 2.10 6.43 -83.70 -0.54 1.56 16 20 C -0.16 -1.29 9.92 -39.46 -0.39 -1.68 16 21 C -0.05 -0.39 9.75 -39.21 -0.38 -0.77 16 22 C -0.07 -0.67 5.74 -106.83 -0.61 -1.28 16 23 C 0.26 3.04 15.33 -22.47 -0.34 2.70 16 24 N -0.43 -5.94 18.54 41.84 0.78 -5.16 16 25 C -0.04 -0.48 9.75 -39.21 -0.38 -0.86 16 26 C -0.14 -1.80 8.75 -39.46 -0.35 -2.14 16 27 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 30 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.03 0.40 7.01 -51.93 -0.36 0.04 16 32 H 0.11 2.16 6.58 -51.93 -0.34 1.81 16 33 H 0.04 0.54 7.98 -51.93 -0.41 0.13 16 34 H 0.03 0.78 6.13 -51.93 -0.32 0.46 16 35 H -0.02 -0.43 7.55 -51.93 -0.39 -0.82 16 36 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 37 H 0.06 0.69 7.98 -51.93 -0.41 0.27 16 38 H 0.10 1.06 6.65 -51.93 -0.35 0.72 16 39 H 0.41 2.60 8.79 -40.82 -0.36 2.24 16 40 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 41 H 0.13 0.76 8.06 -52.48 -0.42 0.34 16 42 H 0.14 1.35 8.06 -52.49 -0.42 0.92 16 43 H 0.17 2.63 5.60 -52.49 -0.29 2.34 16 LS Contribution 367.89 15.07 5.54 5.54 Total: -1.00 -35.93 367.89 -6.75 -42.69 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -5.77 Total: 0.01 kcal Atomic # 6 Polarization: 2.81 SS G_CDS: -2.20 Total: 0.61 kcal Atomic # 7 Polarization: -50.32 SS G_CDS: 0.63 Total: -49.69 kcal Atomic # 8 Polarization: -15.56 SS G_CDS: -0.30 Total: -15.85 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.67 Total: 16.69 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.93 -6.75 -42.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071223845.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.815 kcal (2) G-P(sol) polarization free energy of solvation -35.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds