Wall clock time and date at job start Tue Mar 31 2020 11:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42903 * 113.99887 * 2 1 4 4 C 1.52993 * 109.47647 * 184.92478 * 3 2 1 5 5 N 1.46898 * 109.47125 * 52.50172 * 4 3 2 6 6 C 1.46904 * 111.00457 * 200.74077 * 5 4 3 7 7 C 1.50707 * 109.46426 * 66.04552 * 6 5 4 8 8 H 1.07993 * 120.00451 * 0.02562 * 7 6 5 9 9 C 1.37878 * 119.99348 * 180.02562 * 7 6 5 10 10 N 1.31522 * 119.99733 * 180.02562 * 9 7 6 11 11 Si 1.86795 * 120.00365 * 359.97438 * 9 7 6 12 12 H 1.48501 * 109.47192 * 90.00405 * 11 9 7 13 13 H 1.48510 * 109.47232 * 210.00333 * 11 9 7 14 14 H 1.48502 * 109.47120 * 330.00050 * 11 9 7 15 15 C 1.46907 * 110.99920 * 76.79015 * 5 4 3 16 16 C 1.50696 * 109.47032 * 201.05886 * 15 5 4 17 17 O 1.21279 * 120.00263 * 7.68042 * 16 15 5 18 18 N 1.34778 * 120.00154 * 187.67801 * 16 15 5 19 19 C 1.39543 * 120.00302 * 184.04961 * 18 16 15 20 20 C 1.39105 * 119.92119 * 153.06612 * 19 18 16 21 21 C 1.37686 * 120.08184 * 180.02562 * 20 19 18 22 22 C 1.39773 * 119.92157 * 359.97438 * 21 20 19 23 23 C 1.43196 * 120.07980 * 179.97438 * 22 21 20 24 24 N 9.75002 * 95.90415 * 140.31237 * 5 1 2 25 25 C 1.39770 * 119.83964 * 0.24669 * 22 21 20 26 26 C 1.37699 * 119.91933 * 359.53993 * 25 22 21 27 27 H 1.08993 * 109.47468 * 304.92674 * 1 2 3 28 28 H 1.08999 * 109.46906 * 64.93555 * 1 2 3 29 29 H 1.09007 * 109.46538 * 184.93134 * 1 2 3 30 30 H 1.08997 * 109.47441 * 64.92167 * 3 2 1 31 31 H 1.09005 * 109.46900 * 304.92455 * 3 2 1 32 32 H 1.09002 * 109.47446 * 292.50212 * 4 3 2 33 33 H 1.09002 * 109.47468 * 172.49972 * 4 3 2 34 34 H 1.08992 * 109.47335 * 186.04850 * 6 5 4 35 35 H 1.08996 * 109.47320 * 306.05228 * 6 5 4 36 36 H 0.96992 * 119.99749 * 179.97438 * 10 9 7 37 37 H 1.08997 * 109.46986 * 81.05598 * 15 5 4 38 38 H 1.08999 * 109.47026 * 321.05611 * 15 5 4 39 39 H 0.97000 * 119.99673 * 4.05647 * 18 16 15 40 40 H 1.08002 * 119.95321 * 0.02562 * 20 19 18 41 41 H 1.08004 * 120.04239 * 179.97438 * 21 20 19 42 42 H 1.07997 * 120.04219 * 179.74642 * 25 22 21 43 43 H 1.07998 * 119.96589 * 180.20765 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5305 1.1870 -0.1238 5 7 3.8634 0.3474 -1.2823 6 6 5.2242 -0.1939 -1.1666 7 6 5.2875 -1.1484 -0.0020 8 1 4.4052 -1.3345 0.5923 9 6 6.4720 -1.7840 0.3047 10 7 6.5273 -2.6173 1.3207 11 14 7.9979 -1.4626 -0.7237 12 1 8.7508 -0.3192 -0.1484 13 1 8.8590 -2.6726 -0.7234 14 1 7.5972 -1.1408 -2.1169 15 6 3.6985 1.0928 -2.5375 16 6 3.5354 0.1234 -3.6796 17 8 3.4147 -1.0624 -3.4560 18 7 3.5235 0.5743 -4.9497 19 6 3.2880 -0.3111 -6.0023 20 6 2.7285 0.1536 -7.1880 21 6 2.4943 -0.7172 -8.2285 22 6 2.8199 -2.0696 -8.0924 23 6 2.5772 -2.9784 -9.1722 24 7 2.3849 -3.6994 -10.0287 25 6 3.3776 -2.5340 -6.8979 26 6 3.6131 -1.6565 -5.8631 27 1 -0.3634 0.5883 0.8425 28 1 -0.3633 0.4354 -0.9309 29 1 -0.3633 -1.0240 0.0883 30 1 1.7601 1.8146 0.9307 31 1 1.6204 1.8767 -0.8426 32 1 3.9346 0.7339 0.7814 33 1 3.9625 2.1788 -0.2577 34 1 5.4844 -0.7221 -2.0838 35 1 5.9277 0.6228 -1.0055 36 1 7.3604 -3.0647 1.5361 37 1 4.5782 1.7129 -2.7100 38 1 2.8145 1.7269 -2.4700 39 1 3.6787 1.5142 -5.1321 40 1 2.4776 1.1989 -7.2925 41 1 2.0595 -0.3557 -9.1486 42 1 3.6266 -3.5791 -6.7878 43 1 4.0472 -2.0139 -4.9410 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071223845.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:55 Heat of formation + Delta-G solvation = -23.171195 kcal Electronic energy + Delta-G solvation = -25951.374342 eV Core-core repulsion = 22189.909500 eV Total energy + Delta-G solvation = -3761.464842 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.63898 -39.90193 -38.93480 -37.69145 -37.26202 -35.69135 -34.59880 -32.04189 -31.67268 -31.13850 -29.93525 -27.44056 -26.59603 -24.55174 -23.93296 -23.75513 -22.05656 -21.07455 -19.93075 -19.07660 -18.66374 -18.11961 -17.24059 -17.16825 -16.42480 -16.28547 -16.00637 -15.87839 -15.68339 -15.35300 -15.08331 -14.93033 -14.83679 -14.53420 -14.44902 -14.34015 -13.93675 -13.86484 -13.53773 -13.50105 -13.23519 -13.04968 -12.77569 -12.57726 -12.39840 -12.22003 -12.15304 -11.81477 -11.55327 -11.38177 -11.35913 -10.73333 -10.58786 -10.34527 -9.96783 -9.10178 -8.85754 -8.21612 -6.22634 -0.24516 0.43079 1.32451 1.37693 1.46733 1.56336 1.62677 1.95315 2.08390 2.37611 2.92134 2.94024 3.08222 3.12825 3.32353 3.75063 3.97731 4.01457 4.19442 4.30194 4.35546 4.37221 4.41221 4.50806 4.56715 4.62304 4.63755 4.65988 4.75425 4.90456 4.92415 4.98821 5.06113 5.14929 5.24337 5.31204 5.40476 5.44884 5.63717 5.95353 6.02494 6.32968 6.46127 6.51345 6.62479 6.77022 6.85605 7.29775 7.38990 8.95949 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.010548 B = 0.003779 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2653.960624 B = 7407.435440 C = 8974.410563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.405 6.405 3 C 0.070 3.930 4 C 0.059 3.941 5 N -0.525 5.525 6 C 0.181 3.819 7 C -0.501 4.501 8 H 0.033 0.967 9 C 0.002 3.998 10 N -0.953 5.953 11 Si 0.946 3.054 12 H -0.258 1.258 13 H -0.288 1.288 14 H -0.254 1.254 15 C 0.035 3.965 16 C 0.505 3.495 17 O -0.526 6.526 18 N -0.659 5.659 19 C 0.181 3.819 20 C -0.139 4.139 21 C -0.033 4.033 22 C -0.070 4.070 23 C 0.285 3.715 24 N -0.473 5.473 25 C -0.050 4.050 26 C -0.166 4.166 27 H 0.052 0.948 28 H 0.049 0.951 29 H 0.073 0.927 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.056 0.944 33 H 0.076 0.924 34 H 0.017 0.983 35 H -0.004 1.004 36 H 0.264 0.736 37 H 0.089 0.911 38 H 0.135 0.865 39 H 0.433 0.567 40 H 0.178 0.822 41 H 0.167 0.833 42 H 0.132 0.868 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.309 17.689 -16.023 25.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.324 6.324 3 C -0.006 4.006 4 C -0.069 4.069 5 N -0.249 5.249 6 C 0.054 3.946 7 C -0.540 4.540 8 H 0.052 0.948 9 C -0.194 4.194 10 N -0.595 5.595 11 Si 0.770 3.230 12 H -0.183 1.183 13 H -0.214 1.214 14 H -0.178 1.178 15 C -0.096 4.096 16 C 0.292 3.708 17 O -0.399 6.399 18 N -0.306 5.306 19 C 0.084 3.916 20 C -0.160 4.160 21 C -0.054 4.054 22 C -0.074 4.074 23 C -0.029 4.029 24 N -0.150 5.150 25 C -0.071 4.071 26 C -0.187 4.187 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.092 0.908 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.094 0.906 34 H 0.035 0.965 35 H 0.013 0.987 36 H 0.072 0.928 37 H 0.107 0.893 38 H 0.152 0.848 39 H 0.273 0.727 40 H 0.196 0.804 41 H 0.184 0.816 42 H 0.150 0.850 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -9.796 15.105 -16.982 24.749 hybrid contribution 1.345 0.520 0.613 1.567 sum -8.451 15.625 -16.369 24.156 Atomic orbital electron populations 1.22801 0.80925 1.02554 1.00506 1.88172 1.20077 1.28784 1.95337 1.22677 0.92761 0.84495 1.00713 1.22158 0.94916 0.95823 0.94001 1.61252 1.27433 1.35600 1.00622 1.19872 0.85734 0.93410 0.95608 1.21255 0.95897 1.24308 1.12502 0.94847 1.25864 1.02418 0.94785 0.96348 1.70078 1.27904 1.30919 1.30573 0.85734 0.78966 0.78180 0.80099 1.18303 1.21391 1.17821 1.22120 1.05051 0.93925 0.88494 1.21443 0.75069 0.90021 0.84221 1.90728 1.46062 1.18840 1.84310 1.43445 1.70261 1.12922 1.03993 1.18287 0.94624 0.89922 0.88802 1.21084 1.01208 1.02554 0.91106 1.21249 0.94933 0.89490 0.99740 1.16048 1.09379 0.92118 0.89869 1.25889 0.92055 0.92519 0.92458 1.81264 1.11231 1.10325 1.12153 1.21092 0.95040 1.00224 0.90736 1.21486 1.03321 0.93694 1.00180 0.92921 0.93229 0.90790 0.91872 0.91396 0.92553 0.90584 0.96456 0.98697 0.92756 0.89344 0.84780 0.72662 0.80437 0.81554 0.85027 0.85532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 11.01 113.37 1.25 1.98 16 2 O -0.40 -14.74 10.41 -148.98 -1.55 -16.29 16 3 C 0.07 1.94 6.07 71.98 0.44 2.38 16 4 C 0.06 1.96 5.24 86.30 0.45 2.41 16 5 N -0.52 -20.20 3.63 -905.37 -3.29 -23.49 16 6 C 0.18 8.51 3.45 85.56 0.30 8.80 16 7 C -0.50 -29.78 8.77 25.60 0.22 -29.56 16 8 H 0.03 2.28 7.57 -2.91 -0.02 2.25 16 9 C 0.00 0.12 5.47 84.65 0.46 0.58 16 10 N -0.95 -61.68 13.96 21.45 0.30 -61.38 16 11 Si 0.95 44.95 27.47 68.60 1.88 46.84 16 12 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 13 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 14 H -0.25 -11.35 6.54 99.48 0.65 -10.70 16 15 C 0.04 0.88 5.30 85.55 0.45 1.34 16 16 C 0.50 14.33 7.23 87.66 0.63 14.96 16 17 O -0.53 -21.46 12.69 -3.03 -0.04 -21.50 16 18 N -0.66 -11.65 5.34 -303.45 -1.62 -13.27 16 19 C 0.18 3.50 6.43 38.33 0.25 3.75 16 20 C -0.14 -1.54 9.92 22.35 0.22 -1.32 16 21 C -0.03 -0.40 9.75 22.51 0.22 -0.18 16 22 C -0.07 -1.27 5.74 -21.29 -0.12 -1.40 16 23 C 0.28 6.24 15.33 88.33 1.35 7.59 16 24 N -0.47 -12.67 18.54 19.00 0.35 -12.32 16 25 C -0.05 -1.11 9.75 22.51 0.22 -0.89 16 26 C -0.17 -4.34 8.75 22.35 0.20 -4.15 16 27 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.05 1.06 8.14 -2.39 -0.02 1.05 16 29 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 30 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.07 1.38 7.01 -2.38 -0.02 1.36 16 32 H 0.06 2.42 6.58 -2.39 -0.02 2.40 16 33 H 0.08 1.91 7.98 -2.39 -0.02 1.89 16 34 H 0.02 0.87 6.13 -2.39 -0.01 0.85 16 35 H 0.00 -0.20 7.55 -2.39 -0.02 -0.21 16 36 H 0.26 15.92 8.31 -92.71 -0.77 15.15 16 37 H 0.09 1.72 7.98 -2.39 -0.02 1.70 16 38 H 0.13 2.30 6.65 -2.39 -0.02 2.29 16 39 H 0.43 3.33 8.79 -92.71 -0.81 2.51 16 40 H 0.18 0.49 8.06 -2.91 -0.02 0.46 16 41 H 0.17 0.95 8.06 -2.91 -0.02 0.93 16 42 H 0.13 2.84 8.06 -2.91 -0.02 2.82 16 43 H 0.13 4.39 5.60 -2.91 -0.02 4.38 16 Total: -1.00 -87.91 367.89 2.75 -85.15 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: 0.17 Total: 9.97 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: 6.54 Total: 6.30 kcal Atomic # 7 Polarization: -106.20 SS G_CDS: -4.26 Total: -110.46 kcal Atomic # 8 Polarization: -36.20 SS G_CDS: -1.59 Total: -37.79 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 1.88 Total: 46.84 kcal Total: -87.91 2.75 -85.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071223845.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.981 kcal (2) G-P(sol) polarization free energy of solvation -87.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds