Wall clock time and date at job start Tue Mar 31 2020 11:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 113.99582 * 2 1 4 4 C 1.53004 * 109.46828 * 184.71780 * 3 2 1 5 5 N 1.46899 * 109.47124 * 68.39042 * 4 3 2 6 6 C 1.46897 * 111.00019 * 286.45843 * 5 4 3 7 7 C 1.50709 * 109.47353 * 302.05778 * 6 5 4 8 8 H 1.08004 * 119.99591 * 4.36991 * 7 6 5 9 9 C 1.37872 * 119.99964 * 184.37296 * 7 6 5 10 10 N 1.31512 * 120.00429 * 354.84257 * 9 7 6 11 11 Si 1.86803 * 119.99656 * 174.84648 * 9 7 6 12 12 H 1.48505 * 109.47268 * 64.99776 * 11 9 7 13 13 H 1.48507 * 109.47006 * 184.99737 * 11 9 7 14 14 H 1.48498 * 109.47196 * 304.99564 * 11 9 7 15 15 C 1.46902 * 110.99656 * 162.50917 * 5 4 3 16 16 C 1.50701 * 109.46938 * 189.99862 * 15 5 4 17 17 C 1.38133 * 119.97398 * 115.30250 * 16 15 5 18 18 C 1.39968 * 118.92276 * 180.31491 * 17 16 15 19 19 O 1.22089 * 120.51910 * 179.66997 * 18 17 16 20 20 N 1.35016 * 118.95934 * 359.38774 * 18 17 16 21 21 C 1.36187 * 119.65889 * 180.27879 * 20 18 17 22 22 C 1.35204 * 120.74127 * 179.97438 * 21 20 18 23 23 C 1.40189 * 120.15225 * 0.10448 * 22 21 20 24 24 C 1.36276 * 119.56729 * 359.93387 * 23 22 21 25 25 C 1.36710 * 119.87472 * 0.29770 * 20 18 17 26 26 N 1.32378 * 119.97231 * 295.00053 * 16 15 5 27 27 H 1.08998 * 109.47075 * 64.94869 * 1 2 3 28 28 H 1.09000 * 109.47061 * 184.94027 * 1 2 3 29 29 H 1.08995 * 109.47767 * 304.94329 * 1 2 3 30 30 H 1.08995 * 109.47584 * 64.71849 * 3 2 1 31 31 H 1.09003 * 109.46784 * 304.71263 * 3 2 1 32 32 H 1.08996 * 109.46879 * 308.38438 * 4 3 2 33 33 H 1.09003 * 109.47042 * 188.38862 * 4 3 2 34 34 H 1.08996 * 109.47032 * 62.05402 * 6 5 4 35 35 H 1.08997 * 109.47641 * 182.05995 * 6 5 4 36 36 H 0.96996 * 120.00531 * 180.02562 * 10 9 7 37 37 H 1.08994 * 109.47241 * 69.99727 * 15 5 4 38 38 H 1.08999 * 109.47361 * 309.99294 * 15 5 4 39 39 H 1.07994 * 120.53828 * 359.97438 * 17 16 15 40 40 H 1.07998 * 119.63415 * 359.97438 * 21 20 18 41 41 H 1.08001 * 119.92139 * 180.02562 * 22 21 20 42 42 H 1.08009 * 120.21783 * 179.97438 * 23 22 21 43 43 H 1.07999 * 120.27780 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5309 1.1867 -0.1186 5 7 3.8801 0.6835 -1.4539 6 6 3.5669 -0.7464 -1.5761 7 6 4.3105 -1.5161 -0.5150 8 1 4.8956 -0.9891 0.2242 9 6 4.2440 -2.8930 -0.4880 10 7 3.4524 -3.5296 -1.3233 11 14 5.2782 -3.8542 0.7351 12 1 4.8311 -3.5401 2.1160 13 1 5.1194 -5.3089 0.4822 14 1 6.7062 -3.4777 0.5795 15 6 5.2936 0.9409 -1.7603 16 6 5.5554 0.6394 -3.2135 17 6 5.9242 1.6555 -4.0735 18 6 6.1555 1.3519 -5.4202 19 8 6.4769 2.2284 -6.2069 20 7 6.0233 0.0736 -5.8342 21 6 6.2506 -0.2387 -7.1401 22 6 6.1251 -1.5116 -7.5783 23 6 5.7553 -2.5295 -6.6881 24 6 5.5249 -2.2274 -5.3794 25 6 5.6626 -0.8973 -4.9419 26 7 5.4377 -0.6000 -3.6634 27 1 -0.3633 0.4351 -0.9310 28 1 -0.3633 -1.0238 0.0885 29 1 -0.3634 0.5886 0.8423 30 1 1.7570 1.8160 0.9292 31 1 1.6232 1.8754 -0.8448 32 1 3.9015 0.4958 0.6385 33 1 3.9846 2.1665 0.0305 34 1 2.4947 -0.8957 -1.4488 35 1 3.8688 -1.1017 -2.5613 36 1 3.4053 -4.4983 -1.3040 37 1 5.9221 0.3038 -1.1381 38 1 5.5244 1.9869 -1.5590 39 1 6.0269 2.6686 -3.7139 40 1 6.5343 0.5391 -7.8336 41 1 6.3089 -1.7445 -8.6168 42 1 5.6544 -3.5467 -7.0371 43 1 5.2399 -3.0027 -4.6836 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072690078.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:44 Heat of formation + Delta-G solvation = 24.230435 kcal Electronic energy + Delta-G solvation = -27198.124354 eV Core-core repulsion = 23438.715001 eV Total energy + Delta-G solvation = -3759.409353 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.35343 -38.21020 -37.99212 -37.16996 -35.56363 -33.74760 -32.32374 -31.67083 -29.56881 -29.22792 -27.30701 -25.96365 -24.89537 -24.75963 -23.41082 -22.68196 -21.84450 -19.74385 -18.66625 -18.31033 -17.18766 -16.42855 -16.25999 -15.83509 -15.55024 -15.37151 -15.23300 -14.65210 -14.41263 -14.12953 -14.01011 -13.83145 -13.57912 -13.15022 -13.06033 -12.40012 -12.07680 -11.95756 -11.89826 -11.88817 -11.27291 -11.06886 -10.94657 -10.80908 -10.62193 -10.54548 -10.51785 -10.16076 -10.01933 -9.78251 -9.45221 -9.18732 -9.07837 -8.81320 -8.04809 -7.42224 -7.10045 -5.78007 -3.78042 0.35533 0.71686 2.28554 2.38393 2.84836 3.39620 3.43460 3.47056 4.05364 4.22075 4.45334 4.53333 4.59430 4.62176 4.73804 4.95164 5.04223 5.29043 5.47750 5.55211 5.59860 5.66310 5.75173 5.82572 5.88405 5.92371 5.94368 6.00286 6.09443 6.13588 6.17803 6.22587 6.28008 6.31847 6.52912 6.66264 6.78011 6.80407 7.49642 7.85233 7.93303 7.96769 8.18618 8.23592 8.33368 8.51003 8.56736 9.27387 9.81349 11.29082 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.011501 B = 0.005035 C = 0.004116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2434.027213 B = 5559.209194 C = 6801.746686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.352 6.352 3 C 0.073 3.927 4 C 0.055 3.945 5 N -0.535 5.535 6 C 0.165 3.835 7 C -0.518 4.518 8 H 0.046 0.954 9 C 0.071 3.929 10 N -0.889 5.889 11 Si 0.875 3.125 12 H -0.282 1.282 13 H -0.290 1.290 14 H -0.281 1.281 15 C 0.099 3.901 16 C 0.242 3.758 17 C -0.336 4.336 18 C 0.507 3.493 19 O -0.557 6.557 20 N -0.431 5.431 21 C 0.087 3.913 22 C -0.170 4.170 23 C -0.057 4.057 24 C -0.112 4.112 25 C 0.377 3.623 26 N -0.481 5.481 27 H 0.032 0.968 28 H 0.079 0.921 29 H 0.027 0.973 30 H 0.037 0.963 31 H 0.044 0.956 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.054 0.946 35 H 0.066 0.934 36 H 0.255 0.745 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.152 0.848 40 H 0.174 0.826 41 H 0.152 0.848 42 H 0.148 0.852 43 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.680 4.284 -8.253 9.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.270 6.270 3 C -0.005 4.005 4 C -0.073 4.073 5 N -0.259 5.259 6 C 0.040 3.960 7 C -0.558 4.558 8 H 0.064 0.936 9 C -0.130 4.130 10 N -0.529 5.529 11 Si 0.704 3.296 12 H -0.208 1.208 13 H -0.216 1.216 14 H -0.207 1.207 15 C -0.030 4.030 16 C 0.112 3.888 17 C -0.362 4.362 18 C 0.315 3.685 19 O -0.440 6.440 20 N -0.134 5.134 21 C -0.035 4.035 22 C -0.191 4.191 23 C -0.081 4.081 24 C -0.132 4.132 25 C 0.134 3.866 26 N -0.204 5.204 27 H 0.050 0.950 28 H 0.098 0.902 29 H 0.046 0.954 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.083 0.917 36 H 0.065 0.935 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.169 0.831 40 H 0.191 0.809 41 H 0.170 0.830 42 H 0.165 0.835 43 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 1.411 4.337 -8.382 9.542 hybrid contribution 1.017 -0.274 0.859 1.359 sum 2.427 4.063 -7.524 8.888 Atomic orbital electron populations 1.22625 0.83389 1.01985 0.98518 1.88343 1.17466 1.26428 1.94729 1.22437 0.94479 0.85349 0.98191 1.22022 0.93498 0.98931 0.92864 1.62750 1.14526 1.23064 1.25579 1.20418 0.98129 0.78958 0.98454 1.21461 1.29222 0.91757 1.13314 0.93618 1.24727 0.95241 0.97581 0.95415 1.69942 1.37604 1.07675 1.37665 0.86959 0.81206 0.79242 0.82239 1.20829 1.21570 1.20702 1.20948 0.93431 0.99840 0.88760 1.21580 0.83416 0.87020 0.96785 1.22533 1.19801 1.02382 0.91462 1.17166 0.80686 0.79837 0.90793 1.90922 1.52002 1.44243 1.56795 1.44508 1.47770 1.11730 1.09435 1.22198 0.96899 0.98944 0.85497 1.20937 1.05097 0.91317 1.01713 1.21457 0.93730 1.00404 0.92518 1.21231 1.01559 0.93267 0.97134 1.20988 0.90119 0.89724 0.85753 1.69305 1.22764 1.20974 1.07327 0.94991 0.90220 0.95440 0.94526 0.93730 0.91920 0.91921 0.92784 0.91653 0.93521 0.91168 0.90828 0.83074 0.80868 0.83048 0.83456 0.81050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.01 101.05 1.11 1.63 16 2 O -0.35 -7.32 7.87 -35.23 -0.28 -7.60 16 3 C 0.07 1.29 6.22 37.16 0.23 1.52 16 4 C 0.06 1.04 5.33 -3.82 -0.02 1.02 16 5 N -0.53 -11.25 4.65 -237.52 -1.10 -12.35 16 6 C 0.17 4.15 4.48 -4.97 -0.02 4.13 16 7 C -0.52 -13.91 7.34 -34.44 -0.25 -14.16 16 8 H 0.05 1.23 5.96 -52.48 -0.31 0.92 16 9 C 0.07 1.98 5.45 -17.82 -0.10 1.88 16 10 N -0.89 -25.46 13.29 55.43 0.74 -24.73 16 11 Si 0.87 21.47 29.54 -169.99 -5.02 16.45 16 12 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 13 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 14 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 15 C 0.10 1.88 5.24 -4.97 -0.03 1.86 16 16 C 0.24 4.69 6.23 -82.40 -0.51 4.18 16 17 C -0.34 -6.06 9.69 -38.97 -0.38 -6.44 16 18 C 0.51 9.29 7.36 -15.50 -0.11 9.18 16 19 O -0.56 -11.07 16.69 4.84 0.08 -10.99 16 20 N -0.43 -6.95 2.76 -65.37 -0.18 -7.13 16 21 C 0.09 1.07 10.08 -16.70 -0.17 0.90 16 22 C -0.17 -1.57 9.99 -39.93 -0.40 -1.97 16 23 C -0.06 -0.58 10.07 -39.56 -0.40 -0.98 16 24 C -0.11 -1.60 9.96 -39.36 -0.39 -1.99 16 25 C 0.38 6.53 7.33 -155.95 -1.14 5.39 16 26 N -0.48 -9.81 7.45 -8.56 -0.06 -9.87 16 27 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.06 1.33 5.92 -51.93 -0.31 1.03 16 33 H 0.06 0.97 7.78 -51.93 -0.40 0.57 16 34 H 0.05 1.51 5.61 -51.93 -0.29 1.22 16 35 H 0.07 1.75 5.16 -51.93 -0.27 1.48 16 36 H 0.26 7.01 8.31 -40.82 -0.34 6.68 16 37 H 0.07 1.46 6.80 -51.93 -0.35 1.11 16 38 H 0.07 1.17 7.60 -51.93 -0.39 0.77 16 39 H 0.15 2.46 7.97 -52.49 -0.42 2.04 16 40 H 0.17 1.90 7.34 -52.49 -0.39 1.51 16 41 H 0.15 0.84 8.06 -52.49 -0.42 0.41 16 42 H 0.15 1.00 8.06 -52.48 -0.42 0.58 16 43 H 0.17 2.63 8.06 -52.49 -0.42 2.20 16 LS Contribution 352.67 15.07 5.31 5.31 Total: -1.00 -33.86 352.67 -8.75 -42.60 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -5.65 Total: 2.16 kcal Atomic # 6 Polarization: 8.73 SS G_CDS: -2.58 Total: 6.15 kcal Atomic # 7 Polarization: -53.47 SS G_CDS: -0.61 Total: -54.09 kcal Atomic # 8 Polarization: -18.39 SS G_CDS: -0.20 Total: -18.59 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.86 -8.75 -42.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072690078.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.832 kcal (2) G-P(sol) polarization free energy of solvation -33.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds