Wall clock time and date at job start Tue Mar 31 2020 11:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 113.99582 * 2 1 4 4 C 1.53004 * 109.46828 * 184.71780 * 3 2 1 5 5 N 1.46899 * 109.47124 * 68.39042 * 4 3 2 6 6 C 1.46897 * 111.00019 * 286.45843 * 5 4 3 7 7 C 1.50709 * 109.47353 * 302.05778 * 6 5 4 8 8 H 1.08004 * 119.99591 * 4.36991 * 7 6 5 9 9 C 1.37872 * 119.99964 * 184.37296 * 7 6 5 10 10 N 1.31512 * 120.00429 * 354.84257 * 9 7 6 11 11 Si 1.86803 * 119.99656 * 174.84648 * 9 7 6 12 12 H 1.48505 * 109.47268 * 64.99776 * 11 9 7 13 13 H 1.48507 * 109.47006 * 184.99737 * 11 9 7 14 14 H 1.48498 * 109.47196 * 304.99564 * 11 9 7 15 15 C 1.46902 * 110.99656 * 162.50917 * 5 4 3 16 16 C 1.50701 * 109.46938 * 189.99862 * 15 5 4 17 17 C 1.38133 * 119.97398 * 115.30250 * 16 15 5 18 18 C 1.39968 * 118.92276 * 180.31491 * 17 16 15 19 19 O 1.22089 * 120.51910 * 179.66997 * 18 17 16 20 20 N 1.35016 * 118.95934 * 359.38774 * 18 17 16 21 21 C 1.36187 * 119.65889 * 180.27879 * 20 18 17 22 22 C 1.35204 * 120.74127 * 179.97438 * 21 20 18 23 23 C 1.40189 * 120.15225 * 0.10448 * 22 21 20 24 24 C 1.36276 * 119.56729 * 359.93387 * 23 22 21 25 25 C 1.36710 * 119.87472 * 0.29770 * 20 18 17 26 26 N 1.32378 * 119.97231 * 295.00053 * 16 15 5 27 27 H 1.08998 * 109.47075 * 64.94869 * 1 2 3 28 28 H 1.09000 * 109.47061 * 184.94027 * 1 2 3 29 29 H 1.08995 * 109.47767 * 304.94329 * 1 2 3 30 30 H 1.08995 * 109.47584 * 64.71849 * 3 2 1 31 31 H 1.09003 * 109.46784 * 304.71263 * 3 2 1 32 32 H 1.08996 * 109.46879 * 308.38438 * 4 3 2 33 33 H 1.09003 * 109.47042 * 188.38862 * 4 3 2 34 34 H 1.08996 * 109.47032 * 62.05402 * 6 5 4 35 35 H 1.08997 * 109.47641 * 182.05995 * 6 5 4 36 36 H 0.96996 * 120.00531 * 180.02562 * 10 9 7 37 37 H 1.08994 * 109.47241 * 69.99727 * 15 5 4 38 38 H 1.08999 * 109.47361 * 309.99294 * 15 5 4 39 39 H 1.07994 * 120.53828 * 359.97438 * 17 16 15 40 40 H 1.07998 * 119.63415 * 359.97438 * 21 20 18 41 41 H 1.08001 * 119.92139 * 180.02562 * 22 21 20 42 42 H 1.08009 * 120.21783 * 179.97438 * 23 22 21 43 43 H 1.07999 * 120.27780 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5309 1.1867 -0.1186 5 7 3.8801 0.6835 -1.4539 6 6 3.5669 -0.7464 -1.5761 7 6 4.3105 -1.5161 -0.5150 8 1 4.8956 -0.9891 0.2242 9 6 4.2440 -2.8930 -0.4880 10 7 3.4524 -3.5296 -1.3233 11 14 5.2782 -3.8542 0.7351 12 1 4.8311 -3.5401 2.1160 13 1 5.1194 -5.3089 0.4822 14 1 6.7062 -3.4777 0.5795 15 6 5.2936 0.9409 -1.7603 16 6 5.5554 0.6394 -3.2135 17 6 5.9242 1.6555 -4.0735 18 6 6.1555 1.3519 -5.4202 19 8 6.4769 2.2284 -6.2069 20 7 6.0233 0.0736 -5.8342 21 6 6.2506 -0.2387 -7.1401 22 6 6.1251 -1.5116 -7.5783 23 6 5.7553 -2.5295 -6.6881 24 6 5.5249 -2.2274 -5.3794 25 6 5.6626 -0.8973 -4.9419 26 7 5.4377 -0.6000 -3.6634 27 1 -0.3633 0.4351 -0.9310 28 1 -0.3633 -1.0238 0.0885 29 1 -0.3634 0.5886 0.8423 30 1 1.7570 1.8160 0.9292 31 1 1.6232 1.8754 -0.8448 32 1 3.9015 0.4958 0.6385 33 1 3.9846 2.1665 0.0305 34 1 2.4947 -0.8957 -1.4488 35 1 3.8688 -1.1017 -2.5613 36 1 3.4053 -4.4983 -1.3040 37 1 5.9221 0.3038 -1.1381 38 1 5.5244 1.9869 -1.5590 39 1 6.0269 2.6686 -3.7139 40 1 6.5343 0.5391 -7.8336 41 1 6.3089 -1.7445 -8.6168 42 1 5.6544 -3.5467 -7.0371 43 1 5.2399 -3.0027 -4.6836 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072690078.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:44 Heat of formation + Delta-G solvation = 1.345869 kcal Electronic energy + Delta-G solvation = -27199.116703 eV Core-core repulsion = 23438.715001 eV Total energy + Delta-G solvation = -3760.401702 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.59747 -39.65134 -39.31795 -38.54697 -37.07315 -34.93566 -34.33238 -32.96600 -30.89349 -30.57032 -29.09587 -27.35629 -26.49608 -25.94604 -24.82593 -24.14433 -23.21775 -21.42482 -19.89830 -19.61242 -18.57162 -18.08034 -17.64023 -17.29248 -17.00856 -16.61448 -16.51242 -16.28662 -15.66679 -15.59617 -15.59063 -15.21874 -15.03813 -14.52171 -14.47412 -14.05390 -13.53594 -13.24648 -13.21359 -12.91172 -12.89055 -12.79389 -12.57119 -12.47834 -12.30748 -12.19827 -11.84827 -11.61035 -11.55093 -11.46573 -11.32373 -10.62933 -10.44313 -10.38250 -9.96893 -8.87017 -8.70388 -7.87375 -5.93952 -0.79070 -0.42987 0.98057 1.17748 1.42067 1.42374 1.48745 1.77564 2.53504 2.76125 3.02453 3.18895 3.28620 3.41383 3.51672 3.62597 3.84405 3.89307 4.10143 4.29720 4.38016 4.43305 4.52371 4.54366 4.56456 4.62383 4.65662 4.75263 4.82586 4.90140 4.92620 5.00965 5.04176 5.13519 5.16547 5.23733 5.43805 5.61024 5.72155 5.75534 6.24430 6.33732 6.48140 6.58408 6.62093 6.73078 6.95021 7.21742 7.67504 9.17425 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.011501 B = 0.005035 C = 0.004116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2434.027213 B = 5559.209194 C = 6801.746686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.397 6.397 3 C 0.072 3.928 4 C 0.053 3.947 5 N -0.536 5.536 6 C 0.183 3.817 7 C -0.515 4.515 8 H 0.040 0.960 9 C 0.022 3.978 10 N -0.918 5.918 11 Si 0.932 3.068 12 H -0.281 1.281 13 H -0.285 1.285 14 H -0.279 1.279 15 C 0.102 3.898 16 C 0.234 3.766 17 C -0.352 4.352 18 C 0.500 3.500 19 O -0.581 6.581 20 N -0.430 5.430 21 C 0.064 3.936 22 C -0.136 4.136 23 C -0.012 4.012 24 C -0.150 4.150 25 C 0.368 3.632 26 N -0.534 5.534 27 H 0.039 0.961 28 H 0.073 0.927 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.050 0.950 32 H 0.034 0.966 33 H 0.100 0.900 34 H 0.024 0.976 35 H 0.050 0.950 36 H 0.255 0.745 37 H 0.046 0.954 38 H 0.107 0.893 39 H 0.162 0.838 40 H 0.188 0.812 41 H 0.208 0.792 42 H 0.195 0.805 43 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.275 4.015 -10.099 11.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.317 6.317 3 C -0.004 4.004 4 C -0.075 4.075 5 N -0.260 5.260 6 C 0.057 3.943 7 C -0.554 4.554 8 H 0.058 0.942 9 C -0.176 4.176 10 N -0.559 5.559 11 Si 0.759 3.241 12 H -0.208 1.208 13 H -0.211 1.211 14 H -0.205 1.205 15 C -0.026 4.026 16 C 0.102 3.898 17 C -0.377 4.377 18 C 0.310 3.690 19 O -0.466 6.466 20 N -0.132 5.132 21 C -0.058 4.058 22 C -0.156 4.156 23 C -0.036 4.036 24 C -0.171 4.171 25 C 0.127 3.873 26 N -0.258 5.258 27 H 0.058 0.942 28 H 0.091 0.909 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.068 0.932 32 H 0.052 0.948 33 H 0.118 0.882 34 H 0.041 0.959 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.125 0.875 39 H 0.180 0.820 40 H 0.205 0.795 41 H 0.225 0.775 42 H 0.212 0.788 43 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 2.009 4.054 -10.250 11.204 hybrid contribution 0.841 -0.286 1.219 1.508 sum 2.850 3.768 -9.031 10.192 Atomic orbital electron populations 1.22737 0.81470 1.02319 1.00132 1.88271 1.19850 1.28459 1.95080 1.22550 0.93402 0.84538 0.99934 1.22172 0.94838 0.99876 0.90646 1.62636 1.15950 1.20409 1.27012 1.19990 0.95845 0.81303 0.97131 1.21665 1.28521 0.92048 1.13190 0.94217 1.25380 0.96410 0.98608 0.97164 1.70058 1.38957 1.07701 1.39176 0.86048 0.79747 0.78109 0.80163 1.20752 1.21077 1.20481 1.21001 0.91690 1.01217 0.88711 1.21593 0.83994 0.87322 0.96901 1.22556 1.20896 1.02631 0.91664 1.17189 0.80668 0.80423 0.90768 1.90888 1.53477 1.44986 1.57276 1.44418 1.47107 1.10833 1.10838 1.22834 0.97900 1.01086 0.84005 1.21627 1.00888 0.89226 1.03818 1.22075 0.88383 1.02821 0.90301 1.21230 1.05067 0.91634 0.99133 1.21261 0.89894 0.90832 0.85292 1.69178 1.25399 1.21740 1.09480 0.94228 0.90866 0.92583 0.91446 0.93167 0.94810 0.88169 0.95857 0.93242 0.93637 0.93593 0.87451 0.81999 0.79525 0.77508 0.78786 0.82958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.97 11.01 113.37 1.25 2.22 16 2 O -0.40 -16.88 7.87 -148.98 -1.17 -18.05 16 3 C 0.07 2.52 6.22 71.98 0.45 2.97 16 4 C 0.05 1.98 5.33 86.30 0.46 2.44 16 5 N -0.54 -23.19 4.65 -905.37 -4.21 -27.39 16 6 C 0.18 9.66 4.48 85.56 0.38 10.04 16 7 C -0.51 -28.71 7.34 25.60 0.19 -28.52 16 8 H 0.04 2.22 5.96 -2.91 -0.02 2.20 16 9 C 0.02 1.28 5.45 84.65 0.46 1.74 16 10 N -0.92 -54.35 13.29 21.45 0.29 -54.06 16 11 Si 0.93 45.20 29.54 68.60 2.03 47.22 16 12 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 13 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 14 H -0.28 -13.32 7.11 99.48 0.71 -12.62 16 15 C 0.10 4.02 5.24 85.56 0.45 4.47 16 16 C 0.23 9.45 6.23 42.45 0.26 9.72 16 17 C -0.35 -13.06 9.69 22.66 0.22 -12.84 16 18 C 0.50 18.60 7.36 84.62 0.62 19.22 16 19 O -0.58 -23.18 16.69 -5.61 -0.09 -23.27 16 20 N -0.43 -13.77 2.76 -478.64 -1.32 -15.10 16 21 C 0.06 1.40 10.08 83.32 0.84 2.24 16 22 C -0.14 -1.82 9.99 22.04 0.22 -1.60 16 23 C -0.01 -0.20 10.07 22.29 0.22 0.03 16 24 C -0.15 -4.23 9.96 22.41 0.22 -4.01 16 25 C 0.37 13.02 7.33 133.98 0.98 14.01 16 26 N -0.53 -22.91 7.45 -181.00 -1.35 -24.26 16 27 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 29 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.03 1.47 5.92 -2.39 -0.01 1.45 16 33 H 0.10 2.96 7.78 -2.39 -0.02 2.94 16 34 H 0.02 1.38 5.61 -2.39 -0.01 1.37 16 35 H 0.05 2.80 5.16 -2.39 -0.01 2.79 16 36 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 37 H 0.05 2.01 6.80 -2.39 -0.02 2.00 16 38 H 0.11 3.38 7.60 -2.39 -0.02 3.36 16 39 H 0.16 5.38 7.97 -2.91 -0.02 5.35 16 40 H 0.19 3.59 7.34 -2.91 -0.02 3.57 16 41 H 0.21 0.65 8.06 -2.91 -0.02 0.62 16 42 H 0.20 1.42 8.06 -2.91 -0.02 1.39 16 43 H 0.15 4.88 8.06 -2.91 -0.02 4.86 16 Total: -1.00 -79.38 352.67 2.43 -76.95 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: 1.03 Total: 15.83 kcal Atomic # 6 Polarization: 14.90 SS G_CDS: 7.23 Total: 22.13 kcal Atomic # 7 Polarization: -114.23 SS G_CDS: -6.59 Total: -120.82 kcal Atomic # 8 Polarization: -40.05 SS G_CDS: -1.27 Total: -41.32 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.22 kcal Total: -79.38 2.43 -76.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072690078.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.297 kcal (2) G-P(sol) polarization free energy of solvation -79.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds