Wall clock time and date at job start Tue Mar 31 2020 11:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35906 * 116.99880 * 2 1 4 4 C 1.38808 * 120.02034 * 359.97438 * 3 2 1 5 5 C 1.38164 * 120.08452 * 179.97438 * 4 3 2 6 6 C 1.38165 * 120.12535 * 0.04330 * 5 4 3 7 7 C 1.38884 * 120.04197 * 359.95479 * 6 5 4 8 8 N 1.39922 * 120.04488 * 180.02562 * 7 6 5 9 9 C 1.34775 * 120.00049 * 324.35423 * 8 7 6 10 10 O 1.21283 * 120.00091 * 5.25265 * 9 8 7 11 11 C 1.50709 * 119.99801 * 185.24966 * 9 8 7 12 12 N 1.46902 * 109.46702 * 185.49988 * 11 9 8 13 13 C 1.46900 * 110.99796 * 75.98526 * 12 11 9 14 14 C 1.50704 * 109.46780 * 189.99874 * 13 12 11 15 15 H 1.07994 * 120.00221 * 359.97438 * 14 13 12 16 16 C 1.37871 * 119.99862 * 180.02562 * 14 13 12 17 17 N 1.31517 * 120.00119 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 120.00020 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47028 * 59.99925 * 18 16 14 20 20 H 1.48501 * 109.46972 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.46922 * 299.99899 * 18 16 14 22 22 C 1.46899 * 110.99834 * 199.93407 * 12 11 9 23 23 C 1.53007 * 109.46921 * 75.92837 * 22 12 11 24 24 C 1.47207 * 109.46941 * 184.32913 * 23 22 12 25 25 N 9.41521 * 125.43569 * 32.32600 * 6 1 2 26 26 C 1.38590 * 120.01935 * 180.02562 * 3 2 1 27 27 H 1.08996 * 109.47635 * 59.99750 * 1 2 3 28 28 H 1.08998 * 109.46970 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47155 * 299.99607 * 1 2 3 30 30 H 1.08001 * 119.95589 * 0.04216 * 4 3 2 31 31 H 1.07998 * 119.94082 * 180.02562 * 5 4 3 32 32 H 1.08004 * 119.98254 * 179.97438 * 6 5 4 33 33 H 0.97005 * 120.00093 * 144.35245 * 8 7 6 34 34 H 1.08996 * 109.47169 * 305.50308 * 11 9 8 35 35 H 1.09001 * 109.46632 * 65.50551 * 11 9 8 36 36 H 1.09000 * 109.46951 * 309.99002 * 13 12 11 37 37 H 1.08997 * 109.47108 * 69.99868 * 13 12 11 38 38 H 0.97004 * 119.99955 * 179.97438 * 17 16 14 39 39 H 1.08992 * 109.47162 * 195.92609 * 22 12 11 40 40 H 1.08999 * 109.47304 * 315.93182 * 22 12 11 41 41 H 1.09002 * 109.47133 * 304.32179 * 23 22 12 42 42 H 1.08992 * 109.47176 * 64.32816 * 23 22 12 43 43 H 1.07995 * 120.05908 * 0.25080 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2903 2.3753 -0.0005 5 6 1.9161 3.6071 0.0000 6 6 3.2957 3.6840 0.0002 7 6 4.0568 2.5223 0.0007 8 7 5.4538 2.6001 0.0015 9 6 6.0743 3.5845 -0.6786 10 8 5.4225 4.4573 -1.2118 11 6 7.5781 3.6007 -0.7764 12 7 8.0117 4.8327 -1.4488 13 6 7.9201 5.9864 -0.5440 14 6 8.1332 7.2566 -1.3266 15 1 8.3186 7.2113 -2.3896 16 6 8.0926 8.4764 -0.6853 17 7 7.8674 8.5316 0.6093 18 14 8.3574 10.0508 -1.6551 19 1 7.3168 10.1644 -2.7084 20 1 8.2647 11.2171 -0.7406 21 1 9.7007 10.0226 -2.2875 22 6 9.3725 4.6897 -1.9834 23 6 9.3345 3.8374 -3.2535 24 6 10.7078 3.6072 -3.7312 25 7 11.7665 3.4307 -4.1019 26 6 3.4299 1.2840 -0.0005 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8901 30 1 0.2118 2.3184 -0.0003 31 1 1.3260 4.5116 0.0000 32 1 3.7825 4.6481 0.0002 33 1 5.9758 1.9456 0.4914 34 1 8.0078 3.5625 0.2246 35 1 7.9142 2.7365 -1.3494 36 1 6.9341 6.0068 -0.0800 37 1 8.6840 5.9034 0.2290 38 1 7.8391 9.3898 1.0605 39 1 9.7758 5.6746 -2.2187 40 1 10.0059 4.2058 -1.2399 41 1 8.8608 2.8803 -3.0347 42 1 8.7645 4.3575 -4.0231 43 1 4.0193 0.3791 -0.0050 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072947331.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:39 Heat of formation + Delta-G solvation = -3.519450 kcal Electronic energy + Delta-G solvation = -25504.557295 eV Core-core repulsion = 21743.944617 eV Total energy + Delta-G solvation = -3760.612678 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.55500 -39.52770 -37.68608 -36.90301 -35.91100 -34.34197 -32.69833 -31.14757 -30.74923 -29.61357 -27.93996 -27.39995 -25.66632 -23.20290 -22.74329 -22.40322 -20.72504 -19.86218 -18.37763 -17.35527 -17.20916 -16.43567 -16.29059 -16.06943 -15.89205 -15.65971 -15.18300 -14.78125 -14.51013 -14.31292 -13.89976 -13.71246 -13.56016 -13.36819 -13.01156 -12.77952 -12.44640 -12.38507 -12.23099 -12.05798 -11.90762 -11.83509 -11.53328 -11.30197 -11.04304 -11.03629 -10.75831 -10.62054 -10.36455 -10.11129 -9.90926 -9.45064 -9.19518 -8.47739 -8.44334 -7.97693 -7.49343 -6.03473 -4.04019 1.25571 1.48558 2.83910 2.92537 2.95778 2.97621 3.34994 3.37694 3.39120 3.42637 3.82428 4.12925 4.43621 4.71767 4.84550 4.91785 4.94139 4.97941 5.03255 5.21717 5.25234 5.32910 5.33773 5.43931 5.45837 5.51415 5.53959 5.60655 5.72668 5.78861 6.18886 6.24560 6.28654 6.41119 6.46501 6.61014 6.92524 7.08920 7.16895 7.30457 7.52008 7.71437 7.75444 7.95464 8.06697 8.39588 8.50981 9.01239 9.59659 11.07592 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.011408 B = 0.003231 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2453.872441 B = 8665.061531 C =10639.929715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.320 6.320 3 C 0.138 3.862 4 C -0.228 4.228 5 C -0.062 4.062 6 C -0.154 4.154 7 C 0.195 3.805 8 N -0.685 5.685 9 C 0.511 3.489 10 O -0.474 6.474 11 C 0.035 3.965 12 N -0.516 5.516 13 C 0.197 3.803 14 C -0.505 4.505 15 H 0.065 0.935 16 C 0.057 3.943 17 N -0.898 5.898 18 Si 0.896 3.104 19 H -0.275 1.275 20 H -0.289 1.289 21 H -0.277 1.277 22 C 0.066 3.934 23 C -0.028 4.028 24 C 0.218 3.782 25 N -0.455 5.455 26 C -0.185 4.185 27 H 0.055 0.945 28 H 0.097 0.903 29 H 0.055 0.945 30 H 0.125 0.875 31 H 0.127 0.873 32 H 0.146 0.854 33 H 0.408 0.592 34 H 0.061 0.939 35 H 0.096 0.904 36 H 0.040 0.960 37 H -0.008 1.008 38 H 0.262 0.738 39 H 0.102 0.898 40 H 0.033 0.967 41 H 0.100 0.900 42 H 0.117 0.883 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.652 -17.079 1.129 20.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.234 6.234 3 C 0.093 3.907 4 C -0.248 4.248 5 C -0.081 4.081 6 C -0.174 4.174 7 C 0.100 3.900 8 N -0.332 5.332 9 C 0.297 3.703 10 O -0.343 6.343 11 C -0.097 4.097 12 N -0.241 5.241 13 C 0.072 3.928 14 C -0.544 4.544 15 H 0.083 0.917 16 C -0.144 4.144 17 N -0.538 5.538 18 Si 0.724 3.276 19 H -0.201 1.201 20 H -0.214 1.214 21 H -0.203 1.203 22 C -0.064 4.064 23 C -0.068 4.068 24 C -0.099 4.099 25 N -0.133 5.133 26 C -0.206 4.206 27 H 0.074 0.926 28 H 0.115 0.885 29 H 0.073 0.927 30 H 0.142 0.858 31 H 0.145 0.855 32 H 0.164 0.836 33 H 0.243 0.757 34 H 0.079 0.921 35 H 0.114 0.886 36 H 0.058 0.942 37 H 0.009 0.991 38 H 0.071 0.929 39 H 0.120 0.880 40 H 0.051 0.949 41 H 0.118 0.882 42 H 0.135 0.865 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -10.708 -16.615 -0.107 19.767 hybrid contribution 0.131 0.592 0.700 0.926 sum -10.576 -16.024 0.592 19.209 Atomic orbital electron populations 1.23021 0.78507 1.03656 1.01427 1.86032 1.21267 1.27079 1.88981 1.18600 0.91614 0.84032 0.96493 1.21163 0.99790 0.92375 1.11447 1.20864 0.94239 0.96971 0.96040 1.21387 0.93537 0.99067 1.03392 1.17394 0.83093 0.92741 0.96773 1.43687 1.04382 1.32610 1.52545 1.21020 0.91046 0.80627 0.77592 1.90763 1.66386 1.34196 1.42995 1.21958 0.91144 0.96767 0.99867 1.61751 1.21859 1.01984 1.38497 1.19806 0.97021 0.86024 0.89902 1.21037 1.48269 0.89983 0.95106 0.91724 1.24946 0.95415 0.99175 0.94885 1.69938 1.49805 1.25608 1.08423 0.86585 0.78732 0.82492 0.79770 1.20073 1.21438 1.20305 1.21932 0.90430 1.01106 0.92901 1.19434 0.84260 1.02767 1.00379 1.29352 0.95145 0.92576 0.92871 1.81155 1.12480 1.09750 1.09891 1.19976 0.91815 0.96999 1.11831 0.92646 0.88461 0.92683 0.85753 0.85459 0.83622 0.75655 0.92087 0.88618 0.94213 0.99055 0.92882 0.87966 0.94905 0.88212 0.86486 0.85128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.32 -3.40 10.49 -19.45 -0.20 -3.61 16 3 C 0.14 1.63 6.68 -39.24 -0.26 1.37 16 4 C -0.23 -2.56 9.04 -39.40 -0.36 -2.92 16 5 C -0.06 -0.79 10.03 -39.64 -0.40 -1.18 16 6 C -0.15 -2.30 8.70 -39.37 -0.34 -2.64 16 7 C 0.20 2.64 6.29 -83.72 -0.53 2.11 16 8 N -0.68 -8.42 5.33 -9.88 -0.05 -8.47 16 9 C 0.51 8.03 7.23 -10.98 -0.08 7.95 16 10 O -0.47 -9.70 12.98 5.56 0.07 -9.63 16 11 C 0.03 0.48 5.30 -4.97 -0.03 0.46 16 12 N -0.52 -9.46 3.95 -237.51 -0.94 -10.40 16 13 C 0.20 4.71 4.37 -4.97 -0.02 4.69 16 14 C -0.51 -13.48 8.23 -34.44 -0.28 -13.76 16 15 H 0.06 1.69 7.31 -52.49 -0.38 1.30 16 16 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 17 N -0.90 -26.05 13.29 55.43 0.74 -25.31 16 18 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 C 0.07 1.03 4.74 -3.82 -0.02 1.01 16 23 C -0.03 -0.33 5.86 -29.51 -0.17 -0.50 16 24 C 0.22 3.00 15.43 -20.77 -0.32 2.68 16 25 N -0.46 -7.43 18.53 42.14 0.78 -6.65 16 26 C -0.18 -2.21 9.91 -39.24 -0.39 -2.60 16 27 H 0.05 0.33 7.66 -51.93 -0.40 -0.07 16 28 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.32 7.66 -51.93 -0.40 -0.08 16 30 H 0.12 1.08 6.29 -52.49 -0.33 0.75 16 31 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 32 H 0.15 2.58 6.24 -52.48 -0.33 2.25 16 33 H 0.41 3.46 8.83 -40.82 -0.36 3.10 16 34 H 0.06 0.80 8.00 -51.93 -0.42 0.38 16 35 H 0.10 0.97 6.46 -51.93 -0.34 0.63 16 36 H 0.04 1.07 6.91 -51.93 -0.36 0.71 16 37 H -0.01 -0.21 8.12 -51.93 -0.42 -0.63 16 38 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 39 H 0.10 1.86 6.58 -51.93 -0.34 1.52 16 40 H 0.03 0.47 8.00 -51.93 -0.42 0.06 16 41 H 0.10 0.92 6.68 -51.93 -0.35 0.58 16 42 H 0.12 1.37 8.14 -51.93 -0.42 0.95 16 43 H 0.13 1.31 8.06 -52.49 -0.42 0.88 16 LS Contribution 367.94 15.07 5.54 5.54 Total: -1.00 -34.27 367.94 -7.04 -41.31 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -5.66 Total: 1.52 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: -2.30 Total: -0.67 kcal Atomic # 7 Polarization: -51.35 SS G_CDS: 0.53 Total: -50.83 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: -0.13 Total: -13.23 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.27 -7.04 -41.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072947331.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.792 kcal (2) G-P(sol) polarization free energy of solvation -34.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds