Wall clock time and date at job start Tue Mar 31 2020 11:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35906 * 116.99880 * 2 1 4 4 C 1.38808 * 120.02034 * 359.97438 * 3 2 1 5 5 C 1.38164 * 120.08452 * 179.97438 * 4 3 2 6 6 C 1.38165 * 120.12535 * 0.04330 * 5 4 3 7 7 C 1.38884 * 120.04197 * 359.95479 * 6 5 4 8 8 N 1.39922 * 120.04488 * 180.02562 * 7 6 5 9 9 C 1.34775 * 120.00049 * 324.35423 * 8 7 6 10 10 O 1.21283 * 120.00091 * 5.25265 * 9 8 7 11 11 C 1.50709 * 119.99801 * 185.24966 * 9 8 7 12 12 N 1.46902 * 109.46702 * 185.49988 * 11 9 8 13 13 C 1.46900 * 110.99796 * 75.98526 * 12 11 9 14 14 C 1.50704 * 109.46780 * 189.99874 * 13 12 11 15 15 H 1.07994 * 120.00221 * 359.97438 * 14 13 12 16 16 C 1.37871 * 119.99862 * 180.02562 * 14 13 12 17 17 N 1.31517 * 120.00119 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 120.00020 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47028 * 59.99925 * 18 16 14 20 20 H 1.48501 * 109.46972 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.46922 * 299.99899 * 18 16 14 22 22 C 1.46899 * 110.99834 * 199.93407 * 12 11 9 23 23 C 1.53007 * 109.46921 * 75.92837 * 22 12 11 24 24 C 1.47207 * 109.46941 * 184.32913 * 23 22 12 25 25 N 9.41521 * 125.43569 * 32.32600 * 6 1 2 26 26 C 1.38590 * 120.01935 * 180.02562 * 3 2 1 27 27 H 1.08996 * 109.47635 * 59.99750 * 1 2 3 28 28 H 1.08998 * 109.46970 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47155 * 299.99607 * 1 2 3 30 30 H 1.08001 * 119.95589 * 0.04216 * 4 3 2 31 31 H 1.07998 * 119.94082 * 180.02562 * 5 4 3 32 32 H 1.08004 * 119.98254 * 179.97438 * 6 5 4 33 33 H 0.97005 * 120.00093 * 144.35245 * 8 7 6 34 34 H 1.08996 * 109.47169 * 305.50308 * 11 9 8 35 35 H 1.09001 * 109.46632 * 65.50551 * 11 9 8 36 36 H 1.09000 * 109.46951 * 309.99002 * 13 12 11 37 37 H 1.08997 * 109.47108 * 69.99868 * 13 12 11 38 38 H 0.97004 * 119.99955 * 179.97438 * 17 16 14 39 39 H 1.08992 * 109.47162 * 195.92609 * 22 12 11 40 40 H 1.08999 * 109.47304 * 315.93182 * 22 12 11 41 41 H 1.09002 * 109.47133 * 304.32179 * 23 22 12 42 42 H 1.08992 * 109.47176 * 64.32816 * 23 22 12 43 43 H 1.07995 * 120.05908 * 0.25080 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2903 2.3753 -0.0005 5 6 1.9161 3.6071 0.0000 6 6 3.2957 3.6840 0.0002 7 6 4.0568 2.5223 0.0007 8 7 5.4538 2.6001 0.0015 9 6 6.0743 3.5845 -0.6786 10 8 5.4225 4.4573 -1.2118 11 6 7.5781 3.6007 -0.7764 12 7 8.0117 4.8327 -1.4488 13 6 7.9201 5.9864 -0.5440 14 6 8.1332 7.2566 -1.3266 15 1 8.3186 7.2113 -2.3896 16 6 8.0926 8.4764 -0.6853 17 7 7.8674 8.5316 0.6093 18 14 8.3574 10.0508 -1.6551 19 1 7.3168 10.1644 -2.7084 20 1 8.2647 11.2171 -0.7406 21 1 9.7007 10.0226 -2.2875 22 6 9.3725 4.6897 -1.9834 23 6 9.3345 3.8374 -3.2535 24 6 10.7078 3.6072 -3.7312 25 7 11.7665 3.4307 -4.1019 26 6 3.4299 1.2840 -0.0005 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8901 30 1 0.2118 2.3184 -0.0003 31 1 1.3260 4.5116 0.0000 32 1 3.7825 4.6481 0.0002 33 1 5.9758 1.9456 0.4914 34 1 8.0078 3.5625 0.2246 35 1 7.9142 2.7365 -1.3494 36 1 6.9341 6.0068 -0.0800 37 1 8.6840 5.9034 0.2290 38 1 7.8391 9.3898 1.0605 39 1 9.7758 5.6746 -2.2187 40 1 10.0059 4.2058 -1.2399 41 1 8.8608 2.8803 -3.0347 42 1 8.7645 4.3575 -4.0231 43 1 4.0193 0.3791 -0.0050 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072947331.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:38 Heat of formation + Delta-G solvation = -27.691435 kcal Electronic energy + Delta-G solvation = -25505.605471 eV Core-core repulsion = 21743.944617 eV Total energy + Delta-G solvation = -3761.660854 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.58965 -40.53211 -38.84853 -37.99988 -37.20566 -35.46007 -34.70108 -32.36629 -31.68736 -30.79641 -29.39952 -28.07635 -27.13781 -24.84009 -23.72578 -23.54664 -21.98435 -21.09743 -19.30051 -18.66793 -18.41595 -18.14636 -17.25154 -17.01116 -16.81585 -16.62395 -16.54191 -16.11931 -15.92154 -15.61560 -15.11231 -14.98104 -14.54497 -14.44144 -14.28807 -14.04484 -13.76246 -13.66584 -13.35783 -13.28095 -13.10755 -12.98949 -12.82528 -12.62992 -12.58246 -12.24150 -12.12773 -11.89107 -11.84959 -11.59713 -11.24418 -11.12944 -10.63210 -10.54122 -9.42642 -9.00253 -8.94907 -8.14713 -6.21211 0.28341 0.49860 1.42868 1.45797 1.52425 1.76655 1.78212 1.87998 1.95049 2.43700 2.54539 2.84520 2.99199 3.19919 3.62715 3.83539 3.94565 4.15148 4.16307 4.29983 4.33769 4.38364 4.43935 4.46756 4.50666 4.54116 4.58788 4.76139 4.78182 4.86744 5.04653 5.10335 5.29303 5.32249 5.33836 5.37106 5.42812 5.59915 5.70429 5.92878 6.10989 6.33787 6.45726 6.48604 6.64674 6.71511 6.93805 7.36002 7.46826 8.96241 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.011408 B = 0.003231 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2453.872441 B = 8665.061531 C =10639.929715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.330 6.330 3 C 0.137 3.863 4 C -0.222 4.222 5 C -0.069 4.069 6 C -0.184 4.184 7 C 0.182 3.818 8 N -0.667 5.667 9 C 0.508 3.492 10 O -0.531 6.531 11 C 0.034 3.966 12 N -0.527 5.527 13 C 0.216 3.784 14 C -0.514 4.514 15 H 0.066 0.934 16 C 0.002 3.998 17 N -0.935 5.935 18 Si 0.958 3.042 19 H -0.273 1.273 20 H -0.287 1.287 21 H -0.266 1.266 22 C 0.067 3.933 23 C -0.012 4.012 24 C 0.244 3.756 25 N -0.500 5.500 26 C -0.182 4.182 27 H 0.063 0.937 28 H 0.120 0.880 29 H 0.065 0.935 30 H 0.153 0.847 31 H 0.138 0.862 32 H 0.107 0.893 33 H 0.428 0.572 34 H 0.076 0.924 35 H 0.148 0.852 36 H 0.003 0.997 37 H -0.030 1.030 38 H 0.261 0.739 39 H 0.070 0.930 40 H 0.048 0.952 41 H 0.140 0.860 42 H 0.124 0.876 43 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.412 -19.614 0.368 23.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.243 6.243 3 C 0.090 3.910 4 C -0.241 4.241 5 C -0.088 4.088 6 C -0.205 4.205 7 C 0.087 3.913 8 N -0.315 5.315 9 C 0.296 3.704 10 O -0.405 6.405 11 C -0.097 4.097 12 N -0.251 5.251 13 C 0.090 3.910 14 C -0.552 4.552 15 H 0.084 0.916 16 C -0.196 4.196 17 N -0.576 5.576 18 Si 0.784 3.216 19 H -0.198 1.198 20 H -0.213 1.213 21 H -0.191 1.191 22 C -0.062 4.062 23 C -0.052 4.052 24 C -0.073 4.073 25 N -0.178 5.178 26 C -0.203 4.203 27 H 0.082 0.918 28 H 0.139 0.861 29 H 0.083 0.917 30 H 0.171 0.829 31 H 0.156 0.844 32 H 0.126 0.874 33 H 0.267 0.733 34 H 0.093 0.907 35 H 0.166 0.834 36 H 0.021 0.979 37 H -0.012 1.012 38 H 0.070 0.930 39 H 0.088 0.912 40 H 0.066 0.934 41 H 0.158 0.842 42 H 0.142 0.858 43 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -11.458 -19.216 -0.860 22.389 hybrid contribution 0.236 1.255 0.977 1.608 sum -11.222 -17.961 0.117 21.179 Atomic orbital electron populations 1.23356 0.76378 1.05611 1.02308 1.86030 1.23465 1.26229 1.88603 1.18773 0.91832 0.84756 0.95593 1.21422 1.01244 0.91453 1.10024 1.21025 0.93450 0.98375 0.95901 1.21246 0.94883 0.98178 1.06184 1.17471 0.83386 0.92939 0.97517 1.43446 1.04286 1.32103 1.51711 1.21386 0.91716 0.80284 0.77009 1.90754 1.67532 1.36426 1.45741 1.22146 0.89942 0.96300 1.01314 1.61487 1.23669 1.02228 1.37727 1.19307 0.93989 0.87856 0.89801 1.21462 1.47009 0.91336 0.95400 0.91565 1.25794 0.95481 1.02565 0.95769 1.70066 1.51383 1.26189 1.09984 0.85602 0.79007 0.78649 0.78369 1.19816 1.21289 1.19113 1.21863 0.88961 1.00501 0.94896 1.19387 0.83413 1.03992 0.98437 1.29514 0.94930 0.91144 0.91684 1.81192 1.13782 1.11484 1.11349 1.20143 0.92379 0.96864 1.10947 0.91849 0.86143 0.91651 0.82941 0.84376 0.87447 0.73323 0.90653 0.83414 0.97924 1.01205 0.93025 0.91166 0.93390 0.84233 0.85823 0.82934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 113.37 1.11 1.29 16 2 O -0.33 -6.09 10.49 -92.50 -0.97 -7.06 16 3 C 0.14 2.95 6.68 22.49 0.15 3.10 16 4 C -0.22 -4.63 9.04 22.39 0.20 -4.43 16 5 C -0.07 -1.75 10.03 22.23 0.22 -1.53 16 6 C -0.18 -5.81 8.70 22.41 0.19 -5.61 16 7 C 0.18 4.89 6.29 38.14 0.24 5.13 16 8 N -0.67 -15.88 5.33 -303.55 -1.62 -17.50 16 9 C 0.51 15.96 7.23 87.66 0.63 16.59 16 10 O -0.53 -22.71 12.98 -3.04 -0.04 -22.75 16 11 C 0.03 0.89 5.30 85.56 0.45 1.34 16 12 N -0.53 -19.08 3.95 -905.35 -3.58 -22.66 16 13 C 0.22 10.75 4.37 85.56 0.37 11.12 16 14 C -0.51 -28.16 8.23 25.60 0.21 -27.95 16 15 H 0.07 3.52 7.31 -2.91 -0.02 3.50 16 16 C 0.00 0.09 5.46 84.65 0.46 0.55 16 17 N -0.94 -56.19 13.29 21.45 0.28 -55.90 16 18 Si 0.96 44.65 29.54 68.60 2.03 46.68 16 19 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 20 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 21 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 22 C 0.07 1.99 4.74 86.31 0.41 2.40 16 23 C -0.01 -0.25 5.86 28.79 0.17 -0.08 16 24 C 0.24 6.17 15.43 89.45 1.38 7.55 16 25 N -0.50 -15.60 18.53 20.00 0.37 -15.23 16 26 C -0.18 -4.05 9.91 22.49 0.22 -3.83 16 27 H 0.06 0.56 7.66 -2.39 -0.02 0.54 16 28 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.06 0.54 7.66 -2.38 -0.02 0.53 16 30 H 0.15 2.22 6.29 -2.91 -0.02 2.20 16 31 H 0.14 3.04 8.06 -2.91 -0.02 3.02 16 32 H 0.11 4.22 6.24 -2.91 -0.02 4.20 16 33 H 0.43 6.38 8.83 -92.70 -0.82 5.57 16 34 H 0.08 1.83 8.00 -2.39 -0.02 1.81 16 35 H 0.15 2.30 6.46 -2.39 -0.02 2.29 16 36 H 0.00 0.15 6.91 -2.39 -0.02 0.13 16 37 H -0.03 -1.56 8.12 -2.39 -0.02 -1.58 16 38 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 39 H 0.07 2.55 6.58 -2.39 -0.02 2.53 16 40 H 0.05 1.28 8.00 -2.39 -0.02 1.26 16 41 H 0.14 1.86 6.68 -2.39 -0.02 1.85 16 42 H 0.12 2.55 8.14 -2.39 -0.02 2.53 16 43 H 0.15 2.62 8.06 -2.91 -0.02 2.59 16 Total: -1.00 -79.58 367.94 3.14 -76.43 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: 0.23 Total: 12.34 kcal Atomic # 6 Polarization: -0.78 SS G_CDS: 6.44 Total: 5.65 kcal Atomic # 7 Polarization: -106.75 SS G_CDS: -4.54 Total: -111.29 kcal Atomic # 8 Polarization: -28.80 SS G_CDS: -1.01 Total: -29.81 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -79.58 3.14 -76.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072947331.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.741 kcal (2) G-P(sol) polarization free energy of solvation -79.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds