Wall clock time and date at job start Tue Mar 31 2020 11:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42900 * 113.99956 * 2 1 4 4 C 1.52997 * 109.47013 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47078 * 64.99888 * 4 3 2 6 6 C 1.46492 * 120.00313 * 270.27526 * 5 4 3 7 7 C 1.50707 * 109.47106 * 269.72608 * 6 5 4 8 8 H 1.07998 * 120.00140 * 0.02562 * 7 6 5 9 9 C 1.37877 * 120.00145 * 179.97438 * 7 6 5 10 10 N 1.31510 * 120.00083 * 179.97438 * 9 7 6 11 11 Si 1.86806 * 119.99914 * 359.97438 * 9 7 6 12 12 H 1.48502 * 109.46867 * 90.00132 * 11 9 7 13 13 H 1.48497 * 109.47117 * 209.99838 * 11 9 7 14 14 H 1.48500 * 109.46848 * 330.00287 * 11 9 7 15 15 C 1.34780 * 119.99583 * 89.99980 * 5 4 3 16 16 O 1.21597 * 119.99661 * 179.97438 * 15 5 4 17 17 N 1.34779 * 120.00226 * 0.02562 * 15 5 4 18 18 C 1.40181 * 119.99674 * 174.64262 * 17 15 5 19 19 C 1.39393 * 119.88232 * 326.44221 * 18 17 15 20 20 C 1.37640 * 120.60448 * 179.72298 * 19 18 17 21 21 C 1.39118 * 120.02046 * 0.55497 * 20 19 18 22 22 N 1.37888 * 133.34424 * 179.74109 * 21 20 19 23 23 H 0.97005 * 125.07023 * 0.02562 * 22 21 20 24 24 C 1.36798 * 109.85821 * 179.97438 * 22 21 20 25 25 C 1.34237 * 109.94091 * 0.02562 * 24 22 21 26 26 C 1.40631 * 119.53913 * 359.72928 * 21 20 19 27 27 C 1.38185 * 119.87847 * 146.72445 * 18 17 15 28 28 H 1.09001 * 109.46788 * 299.99769 * 1 2 3 29 29 H 1.08997 * 109.47189 * 59.99619 * 1 2 3 30 30 H 1.09003 * 109.46809 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47080 * 60.00115 * 3 2 1 32 32 H 1.09002 * 109.47219 * 300.00336 * 3 2 1 33 33 H 1.08999 * 109.47053 * 304.99747 * 4 3 2 34 34 H 1.09003 * 109.46980 * 185.00144 * 4 3 2 35 35 H 1.09001 * 109.47221 * 29.72388 * 6 5 4 36 36 H 1.08998 * 109.47599 * 149.72953 * 6 5 4 37 37 H 0.97001 * 120.00008 * 179.97438 * 10 9 7 38 38 H 0.96994 * 119.99973 * 354.63514 * 17 15 5 39 39 H 1.08001 * 119.69333 * 359.97438 * 19 18 17 40 40 H 1.08005 * 119.98964 * 180.30061 * 20 19 18 41 41 H 1.08003 * 125.03144 * 180.02562 * 24 22 21 42 42 H 1.07999 * 126.49633 * 180.02562 * 25 24 22 43 43 H 1.07992 * 120.20407 * 0.02562 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9756 0.5644 -1.2527 6 6 4.0994 -0.8924 -1.3446 7 6 5.4947 -1.3039 -0.9510 8 1 6.2170 -0.5551 -0.6610 9 6 5.8490 -2.6363 -0.9602 10 7 7.0668 -2.9953 -0.6172 11 14 4.5991 -3.9317 -1.4598 12 1 4.6784 -4.1566 -2.9255 13 1 4.8909 -5.2017 -0.7477 14 1 3.2347 -3.4663 -1.1035 15 6 4.2614 1.3338 -2.3218 16 8 4.6272 0.8190 -3.3609 17 7 4.1428 2.6738 -2.2388 18 6 4.5463 3.4809 -3.3115 19 6 5.6303 3.0976 -4.0997 20 6 6.0356 3.8759 -5.1600 21 6 5.3694 5.0630 -5.4468 22 7 5.5375 6.0333 -6.4120 23 1 6.2194 6.0211 -7.1018 24 6 4.5984 7.0152 -6.2524 25 6 3.8081 6.7271 -5.2063 26 6 4.2790 5.4560 -4.6504 27 6 3.8717 4.6566 -3.5803 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.6887 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8514 0.5682 0.8409 34 1 3.9785 2.1765 0.0889 35 1 3.3795 -1.3613 -0.6738 36 1 3.9022 -1.2100 -2.3685 37 1 7.3159 -3.9328 -0.6233 38 1 3.7781 3.0796 -1.4368 39 1 6.1543 2.1795 -3.8786 40 1 6.8738 3.5670 -5.7671 41 1 4.5065 7.8924 -6.8757 42 1 2.9811 7.3195 -4.8436 43 1 3.0351 4.9555 -2.9663 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078537180.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:31 Heat of formation + Delta-G solvation = 6.101942 kcal Electronic energy + Delta-G solvation = -26325.577521 eV Core-core repulsion = 22565.382057 eV Total energy + Delta-G solvation = -3760.195463 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.14155 -39.90684 -37.83100 -36.85281 -34.89477 -33.77082 -32.41043 -31.75754 -29.85486 -28.72636 -28.53438 -27.09954 -26.05024 -23.08846 -22.72760 -22.63473 -21.26968 -20.62071 -19.29006 -17.98746 -17.68256 -16.98793 -16.82242 -16.18134 -15.90988 -15.44352 -15.08067 -14.73707 -14.44881 -14.25169 -14.01837 -13.79174 -13.56576 -13.42426 -13.12236 -12.58483 -12.53148 -12.42645 -12.28240 -12.09779 -11.76485 -11.63454 -11.47942 -10.98369 -10.84743 -10.81789 -10.35982 -10.06641 -9.79618 -9.57264 -9.48848 -9.44775 -9.24347 -8.48130 -7.83573 -7.71060 -7.29545 -5.99058 -3.96373 1.23548 1.75844 2.75003 3.09331 3.23436 3.39312 3.45215 3.48876 3.72066 3.92282 4.19172 4.33377 4.50346 4.77632 4.87899 5.17701 5.22967 5.28318 5.34578 5.37877 5.39318 5.44742 5.45993 5.50417 5.52858 5.61883 5.73176 5.75230 5.97198 6.12934 6.22318 6.30685 6.50546 6.74549 6.80543 6.84209 6.93555 7.09721 7.29449 7.36622 7.38951 7.53563 7.59476 7.75284 8.53638 8.57793 9.03891 9.22210 9.62445 11.14431 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014151 B = 0.003651 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.127584 B = 7666.467263 C = 9115.141878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.373 6.373 3 C 0.041 3.959 4 C 0.111 3.889 5 N -0.595 5.595 6 C 0.234 3.766 7 C -0.526 4.526 8 H 0.073 0.927 9 C 0.072 3.928 10 N -0.901 5.901 11 Si 0.873 3.127 12 H -0.275 1.275 13 H -0.287 1.287 14 H -0.262 1.262 15 C 0.700 3.300 16 O -0.567 6.567 17 N -0.696 5.696 18 C 0.162 3.838 19 C -0.090 4.090 20 C -0.113 4.113 21 C 0.075 3.925 22 N -0.599 5.599 23 H 0.413 0.587 24 C 0.046 3.954 25 C -0.210 4.210 26 C -0.090 4.090 27 C -0.119 4.119 28 H 0.037 0.963 29 H 0.037 0.963 30 H 0.083 0.917 31 H 0.055 0.945 32 H 0.046 0.954 33 H 0.099 0.901 34 H 0.079 0.921 35 H 0.044 0.956 36 H 0.033 0.967 37 H 0.263 0.737 38 H 0.399 0.601 39 H 0.146 0.854 40 H 0.121 0.879 41 H 0.166 0.834 42 H 0.142 0.858 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.910 19.816 -4.435 22.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.292 6.292 3 C -0.037 4.037 4 C -0.014 4.014 5 N -0.328 5.328 6 C 0.114 3.886 7 C -0.565 4.565 8 H 0.091 0.909 9 C -0.130 4.130 10 N -0.540 5.540 11 Si 0.700 3.300 12 H -0.201 1.201 13 H -0.213 1.213 14 H -0.186 1.186 15 C 0.402 3.598 16 O -0.443 6.443 17 N -0.345 5.345 18 C 0.066 3.934 19 C -0.111 4.111 20 C -0.134 4.134 21 C -0.032 4.032 22 N -0.203 5.203 23 H 0.249 0.751 24 C -0.080 4.080 25 C -0.236 4.236 26 C -0.095 4.095 27 C -0.141 4.141 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.102 0.898 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.117 0.883 34 H 0.097 0.903 35 H 0.062 0.938 36 H 0.051 0.949 37 H 0.073 0.927 38 H 0.235 0.765 39 H 0.163 0.837 40 H 0.139 0.861 41 H 0.183 0.817 42 H 0.160 0.840 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -9.330 18.985 -5.195 21.782 hybrid contribution -0.662 -0.254 -0.113 0.718 sum -9.992 18.730 -5.307 21.882 Atomic orbital electron populations 1.22713 0.81879 1.02596 0.99330 1.88062 1.18880 1.27042 1.95190 1.23172 0.95288 0.85505 0.99760 1.21504 0.91065 0.99029 0.89823 1.47147 1.68211 1.08584 1.08899 1.19624 0.97615 0.73404 0.97971 1.21398 0.96186 0.93470 1.45405 0.90871 1.24813 0.95153 0.98305 0.94699 1.69901 1.18281 1.17008 1.48806 0.86884 0.82586 0.81314 0.79213 1.20067 1.21277 1.18613 1.15914 0.79090 0.80199 0.84624 1.90903 1.52518 1.72045 1.28804 1.42920 1.68105 1.05379 1.18124 1.17232 0.94246 0.91247 0.90692 1.21044 0.95267 1.00047 0.94723 1.19892 1.01230 0.92706 0.99600 1.18259 0.99435 0.92688 0.92789 1.41767 1.30459 1.19428 1.28629 0.75123 1.21719 0.91960 0.94128 1.00201 1.21599 1.04135 0.97784 1.00078 1.18836 0.97385 0.96243 0.97046 1.20030 1.00212 0.95394 0.98474 0.94476 0.94482 0.89820 0.92721 0.93620 0.88284 0.90259 0.93802 0.94858 0.92726 0.76531 0.83657 0.86089 0.81693 0.84001 0.86085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 101.05 1.11 1.49 16 2 O -0.37 -5.99 9.50 -35.23 -0.33 -6.32 16 3 C 0.04 0.54 6.28 37.16 0.23 0.77 16 4 C 0.11 1.72 5.53 -4.05 -0.02 1.69 16 5 N -0.59 -12.41 2.42 -180.81 -0.44 -12.84 16 6 C 0.23 5.90 4.04 -5.19 -0.02 5.88 16 7 C -0.53 -15.34 9.94 -34.44 -0.34 -15.68 16 8 H 0.07 2.33 8.06 -52.49 -0.42 1.90 16 9 C 0.07 2.14 5.47 -17.82 -0.10 2.05 16 10 N -0.90 -28.23 13.96 55.43 0.77 -27.45 16 11 Si 0.87 22.21 27.47 -169.99 -4.67 17.54 16 12 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 13 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 14 H -0.26 -6.35 6.54 56.52 0.37 -5.98 16 15 C 0.70 14.76 8.01 -86.91 -0.70 14.06 16 16 O -0.57 -14.32 13.61 5.28 0.07 -14.25 16 17 N -0.70 -11.31 5.18 -14.20 -0.07 -11.38 16 18 C 0.16 2.63 6.27 -83.63 -0.52 2.11 16 19 C -0.09 -1.55 8.62 -39.37 -0.34 -1.89 16 20 C -0.11 -1.65 10.06 -39.47 -0.40 -2.05 16 21 C 0.07 1.00 7.27 -83.91 -0.61 0.39 16 22 N -0.60 -5.92 6.08 -10.62 -0.06 -5.98 16 23 H 0.41 2.81 8.96 -40.82 -0.37 2.45 16 24 C 0.05 0.41 11.81 -16.75 -0.20 0.21 16 25 C -0.21 -2.25 11.08 -37.66 -0.42 -2.67 16 26 C -0.09 -1.23 6.37 -105.14 -0.67 -1.90 16 27 C -0.12 -1.65 10.01 -39.08 -0.39 -2.04 16 28 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.10 1.65 8.07 -51.93 -0.42 1.23 16 34 H 0.08 0.96 6.45 -51.93 -0.33 0.63 16 35 H 0.04 1.09 6.15 -51.93 -0.32 0.77 16 36 H 0.03 0.91 6.85 -51.93 -0.36 0.55 16 37 H 0.26 7.71 8.31 -40.82 -0.34 7.38 16 38 H 0.40 5.04 6.62 -40.82 -0.27 4.77 16 39 H 0.15 2.92 6.41 -52.49 -0.34 2.58 16 40 H 0.12 1.51 8.06 -52.48 -0.42 1.09 16 41 H 0.17 0.80 8.06 -52.48 -0.42 0.38 16 42 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 43 H 0.12 1.38 8.06 -52.49 -0.42 0.95 16 LS Contribution 359.58 15.07 5.42 5.42 Total: -1.00 -37.55 359.58 -8.49 -46.05 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -5.80 Total: 6.80 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: -3.38 Total: 2.42 kcal Atomic # 7 Polarization: -57.86 SS G_CDS: 0.20 Total: -57.66 kcal Atomic # 8 Polarization: -20.31 SS G_CDS: -0.26 Total: -20.57 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.67 Total: 17.54 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -37.55 -8.49 -46.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078537180.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.147 kcal (2) G-P(sol) polarization free energy of solvation -37.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds