Wall clock time and date at job start Tue Mar 31 2020 11:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42900 * 113.99956 * 2 1 4 4 C 1.52997 * 109.47013 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47078 * 64.99888 * 4 3 2 6 6 C 1.46492 * 120.00313 * 270.27526 * 5 4 3 7 7 C 1.50707 * 109.47106 * 269.72608 * 6 5 4 8 8 H 1.07998 * 120.00140 * 0.02562 * 7 6 5 9 9 C 1.37877 * 120.00145 * 179.97438 * 7 6 5 10 10 N 1.31510 * 120.00083 * 179.97438 * 9 7 6 11 11 Si 1.86806 * 119.99914 * 359.97438 * 9 7 6 12 12 H 1.48502 * 109.46867 * 90.00132 * 11 9 7 13 13 H 1.48497 * 109.47117 * 209.99838 * 11 9 7 14 14 H 1.48500 * 109.46848 * 330.00287 * 11 9 7 15 15 C 1.34780 * 119.99583 * 89.99980 * 5 4 3 16 16 O 1.21597 * 119.99661 * 179.97438 * 15 5 4 17 17 N 1.34779 * 120.00226 * 0.02562 * 15 5 4 18 18 C 1.40181 * 119.99674 * 174.64262 * 17 15 5 19 19 C 1.39393 * 119.88232 * 326.44221 * 18 17 15 20 20 C 1.37640 * 120.60448 * 179.72298 * 19 18 17 21 21 C 1.39118 * 120.02046 * 0.55497 * 20 19 18 22 22 N 1.37888 * 133.34424 * 179.74109 * 21 20 19 23 23 H 0.97005 * 125.07023 * 0.02562 * 22 21 20 24 24 C 1.36798 * 109.85821 * 179.97438 * 22 21 20 25 25 C 1.34237 * 109.94091 * 0.02562 * 24 22 21 26 26 C 1.40631 * 119.53913 * 359.72928 * 21 20 19 27 27 C 1.38185 * 119.87847 * 146.72445 * 18 17 15 28 28 H 1.09001 * 109.46788 * 299.99769 * 1 2 3 29 29 H 1.08997 * 109.47189 * 59.99619 * 1 2 3 30 30 H 1.09003 * 109.46809 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47080 * 60.00115 * 3 2 1 32 32 H 1.09002 * 109.47219 * 300.00336 * 3 2 1 33 33 H 1.08999 * 109.47053 * 304.99747 * 4 3 2 34 34 H 1.09003 * 109.46980 * 185.00144 * 4 3 2 35 35 H 1.09001 * 109.47221 * 29.72388 * 6 5 4 36 36 H 1.08998 * 109.47599 * 149.72953 * 6 5 4 37 37 H 0.97001 * 120.00008 * 179.97438 * 10 9 7 38 38 H 0.96994 * 119.99973 * 354.63514 * 17 15 5 39 39 H 1.08001 * 119.69333 * 359.97438 * 19 18 17 40 40 H 1.08005 * 119.98964 * 180.30061 * 20 19 18 41 41 H 1.08003 * 125.03144 * 180.02562 * 24 22 21 42 42 H 1.07999 * 126.49633 * 180.02562 * 25 24 22 43 43 H 1.07992 * 120.20407 * 0.02562 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9756 0.5644 -1.2527 6 6 4.0994 -0.8924 -1.3446 7 6 5.4947 -1.3039 -0.9510 8 1 6.2170 -0.5551 -0.6610 9 6 5.8490 -2.6363 -0.9602 10 7 7.0668 -2.9953 -0.6172 11 14 4.5991 -3.9317 -1.4598 12 1 4.6784 -4.1566 -2.9255 13 1 4.8909 -5.2017 -0.7477 14 1 3.2347 -3.4663 -1.1035 15 6 4.2614 1.3338 -2.3218 16 8 4.6272 0.8190 -3.3609 17 7 4.1428 2.6738 -2.2388 18 6 4.5463 3.4809 -3.3115 19 6 5.6303 3.0976 -4.0997 20 6 6.0356 3.8759 -5.1600 21 6 5.3694 5.0630 -5.4468 22 7 5.5375 6.0333 -6.4120 23 1 6.2194 6.0211 -7.1018 24 6 4.5984 7.0152 -6.2524 25 6 3.8081 6.7271 -5.2063 26 6 4.2790 5.4560 -4.6504 27 6 3.8717 4.6566 -3.5803 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.6887 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8514 0.5682 0.8409 34 1 3.9785 2.1765 0.0889 35 1 3.3795 -1.3613 -0.6738 36 1 3.9022 -1.2100 -2.3685 37 1 7.3159 -3.9328 -0.6233 38 1 3.7781 3.0796 -1.4368 39 1 6.1543 2.1795 -3.8786 40 1 6.8738 3.5670 -5.7671 41 1 4.5065 7.8924 -6.8757 42 1 2.9811 7.3195 -4.8436 43 1 3.0351 4.9555 -2.9663 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078537180.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:30 Heat of formation + Delta-G solvation = -21.033343 kcal Electronic energy + Delta-G solvation = -26326.754195 eV Core-core repulsion = 22565.382057 eV Total energy + Delta-G solvation = -3761.372138 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.15605 -41.34090 -38.95257 -38.08426 -36.52084 -35.26721 -34.45610 -32.75430 -31.38636 -29.99882 -29.58142 -28.63221 -27.09565 -24.74228 -24.05270 -23.81933 -22.60168 -21.52395 -20.70455 -19.31802 -19.08604 -18.74383 -18.22591 -17.25447 -17.11186 -16.75052 -16.52140 -16.14032 -15.87291 -15.53950 -15.30225 -15.03770 -14.90247 -14.70005 -14.46996 -13.94945 -13.81873 -13.72894 -13.58031 -13.30545 -13.15190 -12.88750 -12.87521 -12.71160 -12.45375 -12.02002 -11.95951 -11.90440 -11.71228 -11.16930 -10.83888 -10.78789 -10.57603 -10.53509 -9.44980 -8.80466 -8.40437 -8.30923 -6.34228 0.19504 0.59334 1.33615 1.37243 1.47877 1.71536 1.92211 2.20824 2.33926 2.35836 2.91825 2.96897 3.00082 3.05888 3.82970 4.03924 4.11848 4.19008 4.29550 4.33882 4.38753 4.45620 4.49153 4.55664 4.59827 4.64769 4.75511 4.86882 4.90616 4.92712 5.00705 5.05405 5.18372 5.28340 5.40394 5.49607 5.57937 5.63141 5.87057 5.90024 6.06604 6.26363 6.30185 6.35634 6.66085 6.80280 7.05590 7.27069 7.63688 8.86044 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014151 B = 0.003651 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.127584 B = 7666.467263 C = 9115.141878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.415 6.415 3 C 0.047 3.953 4 C 0.102 3.898 5 N -0.603 5.603 6 C 0.253 3.747 7 C -0.532 4.532 8 H 0.029 0.971 9 C 0.013 3.987 10 N -0.946 5.946 11 Si 0.943 3.057 12 H -0.277 1.277 13 H -0.273 1.273 14 H -0.241 1.241 15 C 0.695 3.305 16 O -0.619 6.619 17 N -0.674 5.674 18 C 0.134 3.866 19 C -0.125 4.125 20 C -0.114 4.114 21 C 0.061 3.939 22 N -0.590 5.590 23 H 0.428 0.572 24 C 0.070 3.930 25 C -0.229 4.229 26 C -0.106 4.106 27 C -0.106 4.106 28 H 0.062 0.938 29 H 0.043 0.957 30 H 0.084 0.916 31 H 0.097 0.903 32 H 0.053 0.947 33 H 0.084 0.916 34 H 0.113 0.887 35 H 0.054 0.946 36 H 0.010 0.990 37 H 0.267 0.733 38 H 0.417 0.583 39 H 0.102 0.898 40 H 0.132 0.868 41 H 0.214 0.786 42 H 0.166 0.834 43 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.774 22.917 -5.059 26.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.335 6.335 3 C -0.031 4.031 4 C -0.021 4.021 5 N -0.336 5.336 6 C 0.130 3.870 7 C -0.571 4.571 8 H 0.048 0.952 9 C -0.185 4.185 10 N -0.586 5.586 11 Si 0.767 3.233 12 H -0.203 1.203 13 H -0.198 1.198 14 H -0.164 1.164 15 C 0.397 3.603 16 O -0.499 6.499 17 N -0.325 5.325 18 C 0.038 3.962 19 C -0.146 4.146 20 C -0.135 4.135 21 C -0.046 4.046 22 N -0.195 5.195 23 H 0.267 0.733 24 C -0.056 4.056 25 C -0.254 4.254 26 C -0.112 4.112 27 C -0.128 4.128 28 H 0.080 0.920 29 H 0.061 0.939 30 H 0.103 0.897 31 H 0.114 0.886 32 H 0.071 0.929 33 H 0.102 0.898 34 H 0.130 0.870 35 H 0.072 0.928 36 H 0.028 0.972 37 H 0.076 0.924 38 H 0.256 0.744 39 H 0.120 0.880 40 H 0.150 0.850 41 H 0.231 0.769 42 H 0.184 0.816 43 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -12.215 22.175 -5.788 25.970 hybrid contribution 0.314 -0.981 -0.010 1.030 sum -11.902 21.195 -5.798 24.990 Atomic orbital electron populations 1.22873 0.79877 1.03261 1.00839 1.87989 1.21224 1.28717 1.95555 1.23171 0.92811 0.85086 1.02022 1.21864 0.93584 0.99908 0.86705 1.47056 1.68549 1.07172 1.10819 1.19132 0.95027 0.76479 0.96334 1.21624 0.97459 0.92887 1.45111 0.95235 1.25765 0.97328 1.00843 0.94559 1.70046 1.20520 1.17854 1.50213 0.85774 0.80649 0.78395 0.78531 1.20295 1.19817 1.16438 1.16104 0.78639 0.81620 0.83922 1.90859 1.54703 1.73464 1.30895 1.42518 1.67420 1.03459 1.19079 1.17375 0.95062 0.92432 0.91282 1.20801 0.96911 0.99668 0.97240 1.19921 1.01574 0.93162 0.98817 1.18289 0.99461 0.92852 0.93993 1.41895 1.30993 1.18619 1.27990 0.73327 1.22530 0.89665 0.94142 0.99288 1.21959 1.05711 0.96896 1.00845 1.19340 0.97477 0.97537 0.96803 1.20249 1.00087 0.93898 0.98555 0.91965 0.93856 0.89748 0.88550 0.92907 0.89765 0.86957 0.92836 0.97185 0.92359 0.74372 0.87969 0.85040 0.76905 0.81612 0.83249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 11.01 113.37 1.25 1.84 16 2 O -0.42 -12.67 9.50 -148.98 -1.42 -14.09 16 3 C 0.05 1.12 6.28 71.98 0.45 1.58 16 4 C 0.10 3.13 5.53 86.38 0.48 3.60 16 5 N -0.60 -25.98 2.42 -844.20 -2.04 -28.02 16 6 C 0.25 13.20 4.04 85.64 0.35 13.55 16 7 C -0.53 -32.73 9.94 25.60 0.25 -32.48 16 8 H 0.03 2.01 8.06 -2.91 -0.02 1.99 16 9 C 0.01 0.79 5.47 84.66 0.46 1.25 16 10 N -0.95 -61.67 13.96 21.45 0.30 -61.37 16 11 Si 0.94 46.95 27.47 68.60 1.88 48.84 16 12 H -0.28 -13.84 7.11 99.48 0.71 -13.13 16 13 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 14 H -0.24 -11.11 6.54 99.48 0.65 -10.46 16 15 C 0.70 30.77 8.01 179.05 1.43 32.21 16 16 O -0.62 -33.63 13.61 -4.02 -0.05 -33.69 16 17 N -0.67 -22.32 5.18 -317.09 -1.64 -23.97 16 18 C 0.13 4.46 6.27 38.07 0.24 4.70 16 19 C -0.12 -4.66 8.62 22.41 0.19 -4.47 16 20 C -0.11 -3.45 10.06 22.34 0.22 -3.23 16 21 C 0.06 1.57 7.27 38.99 0.28 1.86 16 22 N -0.59 -9.79 6.08 -187.52 -1.14 -10.93 16 23 H 0.43 4.48 8.96 -92.70 -0.83 3.65 16 24 C 0.07 0.90 11.81 83.00 0.98 1.88 16 25 C -0.23 -3.98 11.08 23.51 0.26 -3.72 16 26 C -0.11 -2.67 6.37 -20.20 -0.13 -2.79 16 27 C -0.11 -2.80 10.01 22.60 0.23 -2.58 16 28 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.08 2.83 8.07 -2.39 -0.02 2.81 16 34 H 0.11 2.59 6.45 -2.39 -0.02 2.57 16 35 H 0.05 2.69 6.15 -2.39 -0.01 2.68 16 36 H 0.01 0.57 6.85 -2.39 -0.02 0.55 16 37 H 0.27 16.20 8.31 -92.71 -0.77 15.43 16 38 H 0.42 10.11 6.62 -92.71 -0.61 9.50 16 39 H 0.10 4.65 6.41 -2.91 -0.02 4.63 16 40 H 0.13 3.47 8.06 -2.91 -0.02 3.45 16 41 H 0.21 0.65 8.06 -2.91 -0.02 0.63 16 42 H 0.17 2.02 8.06 -2.91 -0.02 2.00 16 43 H 0.15 2.96 8.06 -2.91 -0.02 2.93 16 Total: -1.00 -89.15 359.58 2.39 -86.75 By element: Atomic # 1 Polarization: 23.73 SS G_CDS: -0.45 Total: 23.28 kcal Atomic # 6 Polarization: 6.24 SS G_CDS: 6.96 Total: 13.20 kcal Atomic # 7 Polarization: -119.76 SS G_CDS: -4.53 Total: -124.29 kcal Atomic # 8 Polarization: -46.30 SS G_CDS: -1.47 Total: -47.77 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 1.88 Total: 48.84 kcal Total: -89.15 2.39 -86.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078537180.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.720 kcal (2) G-P(sol) polarization free energy of solvation -89.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds