Wall clock time and date at job start Tue Mar 31 2020 11:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99771 * 2 1 4 4 C 1.50699 * 109.47111 * 270.00104 * 3 2 1 5 5 H 1.08007 * 120.00126 * 359.97438 * 4 3 2 6 6 C 1.37878 * 120.00176 * 180.02562 * 4 3 2 7 7 N 1.31508 * 119.99777 * 359.97438 * 6 4 3 8 8 Si 1.86799 * 120.00050 * 179.97438 * 6 4 3 9 9 H 1.48505 * 109.47328 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47234 * 119.99834 * 8 6 4 11 11 H 1.48503 * 109.47259 * 239.99861 * 8 6 4 12 12 C 1.34775 * 120.00075 * 179.97438 * 2 1 3 13 13 O 1.21550 * 119.99861 * 184.27075 * 12 2 1 14 14 C 1.47857 * 120.00144 * 4.26169 * 12 2 1 15 15 C 1.39620 * 120.11166 * 318.79021 * 14 12 2 16 16 C 1.37986 * 119.99268 * 180.02562 * 15 14 12 17 17 C 1.38250 * 120.22053 * 359.74303 * 16 15 14 18 18 C 1.38949 * 120.22554 * 0.51200 * 17 16 15 19 19 N 1.39975 * 119.99606 * 179.76717 * 18 17 16 20 20 C 1.46387 * 119.33016 * 291.94647 * 19 18 17 21 21 C 1.53244 * 109.15219 * 209.08862 * 20 19 18 22 22 C 1.53500 * 108.42823 * 304.37884 * 21 20 19 23 23 N 1.46379 * 109.01251 * 55.79016 * 22 21 20 24 24 C 1.34129 * 121.34415 * 330.54650 * 23 22 21 25 25 O 1.21592 * 118.69936 * 180.80195 * 24 23 22 26 26 C 1.38625 * 120.00252 * 359.49046 * 18 17 16 27 27 H 1.09003 * 109.46830 * 271.01056 * 1 2 3 28 28 H 1.08998 * 109.46859 * 31.01139 * 1 2 3 29 29 H 1.08996 * 109.46847 * 151.01760 * 1 2 3 30 30 H 1.09003 * 109.47396 * 29.99838 * 3 2 1 31 31 H 1.08997 * 109.47098 * 149.99831 * 3 2 1 32 32 H 0.97009 * 120.00129 * 179.97438 * 7 6 4 33 33 H 1.07998 * 120.00203 * 359.97438 * 15 14 12 34 34 H 1.07997 * 119.88685 * 180.02562 * 16 15 14 35 35 H 1.08002 * 119.88549 * 180.27702 * 17 16 15 36 36 H 1.09001 * 109.52332 * 328.98305 * 20 19 18 37 37 H 1.08991 * 109.52522 * 89.11834 * 20 19 18 38 38 H 1.09000 * 109.62334 * 64.24063 * 21 20 19 39 39 H 1.09007 * 109.61731 * 184.79690 * 21 20 19 40 40 H 1.09007 * 109.70498 * 295.86185 * 22 21 20 41 41 H 1.08996 * 109.48098 * 175.59016 * 22 21 20 42 42 H 0.97009 * 119.32556 * 150.82362 * 23 22 21 43 43 H 1.08000 * 120.11073 * 180.23811 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0981 1.0958 -2.2418 6 6 3.1268 2.8775 -1.6728 7 7 3.5541 3.6176 -0.6732 8 14 3.4387 3.4164 -3.4340 9 1 2.8617 2.4158 -4.3674 10 1 2.8016 4.7373 -3.6677 11 1 4.9014 3.5242 -3.6670 12 6 2.1390 -1.1672 0.0005 13 8 3.3519 -1.1686 0.0789 14 6 1.4028 -2.4460 -0.0941 15 6 0.2170 -2.6261 0.6207 16 6 -0.4677 -3.8207 0.5310 17 6 0.0134 -4.8402 -0.2692 18 6 1.1953 -4.6727 -0.9804 19 7 1.6806 -5.7099 -1.7854 20 6 2.1693 -6.9377 -1.1556 21 6 3.2497 -7.5630 -2.0445 22 6 2.6602 -7.7797 -3.4451 23 7 2.1496 -6.5042 -3.9502 24 6 1.6889 -5.5584 -3.1181 25 8 1.2623 -4.5225 -3.5906 26 6 1.8908 -3.4764 -0.8971 27 1 -0.3633 0.0181 1.0275 28 1 -0.3633 0.8808 -0.5295 29 1 -0.3633 -0.8989 -0.4979 30 1 1.6084 2.0284 0.5138 31 1 3.1499 1.1385 0.5138 32 1 4.0316 4.4432 -0.8505 33 1 -0.1638 -1.8308 1.2443 34 1 -1.3850 -3.9580 1.0843 35 1 -0.5293 -5.7714 -0.3389 36 1 2.5924 -6.7027 -0.1789 37 1 1.3438 -7.6392 -1.0358 38 1 4.1074 -6.8931 -2.1045 39 1 3.5586 -8.5210 -1.6261 40 1 1.8463 -8.5031 -3.3935 41 1 3.4372 -8.1514 -4.1131 42 1 2.1407 -6.3412 -4.9064 43 1 2.8076 -3.3430 -1.4521 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081406337.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:26 Heat of formation + Delta-G solvation = -13.524896 kcal Electronic energy + Delta-G solvation = -26503.683822 eV Core-core repulsion = 22742.637275 eV Total energy + Delta-G solvation = -3761.046547 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.19276 -39.62431 -37.87640 -36.64387 -35.13298 -34.76276 -32.60470 -31.47401 -31.00421 -29.74985 -27.63455 -26.20958 -25.88399 -24.08697 -23.74351 -22.20626 -21.98564 -19.92968 -18.56081 -17.77532 -17.48934 -16.55299 -16.45200 -16.32027 -16.12882 -15.51972 -15.13022 -14.95228 -14.44225 -14.24978 -14.19920 -14.05698 -13.73586 -13.65054 -12.81225 -12.73106 -12.59615 -12.26149 -12.05111 -11.96902 -11.76859 -11.70731 -11.48046 -11.23410 -11.08962 -10.82251 -10.54520 -10.22816 -10.11104 -9.59205 -9.44586 -9.31924 -8.99763 -8.75460 -8.44789 -8.38425 -7.61285 -5.99925 -4.04270 1.10435 1.37737 2.42486 3.00182 3.29367 3.34646 3.41961 3.48664 3.55979 3.83029 4.15516 4.23518 4.37898 4.50160 4.65899 4.88399 4.91962 4.93170 5.03672 5.08501 5.15321 5.24514 5.29480 5.35092 5.51416 5.56794 5.63177 5.76681 5.93328 5.95616 5.99126 6.29472 6.33461 6.42746 6.48224 6.55262 6.81815 7.03793 7.11068 7.47697 7.55660 7.57300 7.97217 8.27730 8.41631 8.43916 8.93412 9.09732 9.60884 11.08191 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015104 B = 0.003559 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.358116 B = 7864.957892 C = 8945.949999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.592 5.592 3 C 0.244 3.756 4 C -0.527 4.527 5 H 0.059 0.941 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.897 3.103 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.283 1.283 12 C 0.547 3.453 13 O -0.537 6.537 14 C -0.103 4.103 15 C -0.093 4.093 16 C -0.119 4.119 17 C -0.107 4.107 18 C 0.145 3.855 19 N -0.579 5.579 20 C 0.113 3.887 21 C -0.154 4.154 22 C 0.110 3.890 23 N -0.738 5.738 24 C 0.709 3.291 25 O -0.576 6.576 26 C -0.051 4.051 27 H 0.047 0.953 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.035 0.965 31 H 0.046 0.954 32 H 0.262 0.738 33 H 0.137 0.863 34 H 0.130 0.870 35 H 0.123 0.877 36 H 0.087 0.913 37 H 0.068 0.932 38 H 0.081 0.919 39 H 0.099 0.901 40 H 0.065 0.935 41 H 0.084 0.916 42 H 0.416 0.584 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.348 -26.252 0.756 27.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.323 5.323 3 C 0.125 3.875 4 C -0.565 4.565 5 H 0.077 0.923 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.209 1.209 12 C 0.333 3.667 13 O -0.415 6.415 14 C -0.107 4.107 15 C -0.112 4.112 16 C -0.138 4.138 17 C -0.127 4.127 18 C 0.054 3.946 19 N -0.313 5.313 20 C -0.009 4.009 21 C -0.193 4.193 22 C -0.015 4.015 23 N -0.396 5.396 24 C 0.410 3.590 25 O -0.452 6.452 26 C -0.071 4.071 27 H 0.065 0.935 28 H 0.092 0.908 29 H 0.085 0.915 30 H 0.053 0.947 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.155 0.845 34 H 0.148 0.852 35 H 0.141 0.859 36 H 0.105 0.895 37 H 0.086 0.914 38 H 0.100 0.900 39 H 0.117 0.883 40 H 0.083 0.917 41 H 0.102 0.898 42 H 0.254 0.746 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -6.819 -25.542 0.750 26.447 hybrid contribution 0.220 0.266 -1.397 1.439 sum -6.599 -25.275 -0.647 26.131 Atomic orbital electron populations 1.21975 0.81444 1.03171 1.00240 1.48063 1.06316 1.07544 1.70415 1.19347 0.92681 0.77786 0.97658 1.21512 1.36379 1.06316 0.92338 0.92269 1.24927 0.95317 0.96343 0.97490 1.69947 1.38489 1.14363 1.30650 0.86443 0.78063 0.78325 0.84658 1.19681 1.20919 1.20864 1.18148 0.87165 0.83347 0.77997 1.90747 1.13449 1.87070 1.50256 1.20104 0.96067 0.95310 0.99181 1.21644 0.93463 0.97725 0.98370 1.20894 1.00344 0.92864 0.99689 1.21212 0.94036 0.99707 0.97755 1.17087 0.93938 0.88285 0.95265 1.44241 1.66428 1.16920 1.03695 1.21668 0.96626 0.85322 0.97315 1.22280 0.98818 1.02918 0.95258 1.21588 0.98655 0.85669 0.95599 1.44936 1.68216 1.16763 1.09725 1.15454 0.78849 0.83659 0.81045 1.91055 1.52373 1.27316 1.74488 1.21232 0.98849 0.91220 0.95826 0.93456 0.90779 0.91490 0.94724 0.93576 0.92797 0.84536 0.85173 0.85914 0.89467 0.91388 0.89996 0.88269 0.91680 0.89776 0.74632 0.85292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.30 8.92 59.85 0.53 1.84 16 2 N -0.59 -13.54 2.86 -184.07 -0.53 -14.07 16 3 C 0.24 6.68 5.20 -5.19 -0.03 6.65 16 4 C -0.53 -15.67 9.39 -34.44 -0.32 -15.99 16 5 H 0.06 1.79 7.81 -52.48 -0.41 1.38 16 6 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 7 N -0.90 -27.30 13.29 55.43 0.74 -26.56 16 8 Si 0.90 22.78 29.54 -169.99 -5.02 17.76 16 9 H -0.27 -6.91 7.11 56.52 0.40 -6.51 16 10 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 12 C 0.55 12.64 7.33 -12.32 -0.09 12.55 16 13 O -0.54 -14.59 16.49 5.32 0.09 -14.50 16 14 C -0.10 -1.88 5.16 -104.99 -0.54 -2.42 16 15 C -0.09 -1.31 7.49 -39.16 -0.29 -1.61 16 16 C -0.12 -1.36 10.02 -39.67 -0.40 -1.75 16 17 C -0.11 -1.27 9.84 -39.31 -0.39 -1.66 16 18 C 0.14 2.10 4.63 -83.73 -0.39 1.71 16 19 N -0.58 -7.21 2.87 -119.18 -0.34 -7.55 16 20 C 0.11 0.86 6.40 -3.98 -0.03 0.84 16 21 C -0.15 -0.86 6.22 -26.35 -0.16 -1.02 16 22 C 0.11 0.60 7.22 -3.85 -0.03 0.57 16 23 N -0.74 -7.16 5.58 -65.39 -0.36 -7.53 16 24 C 0.71 10.15 8.05 -88.07 -0.71 9.44 16 25 O -0.58 -11.23 16.56 5.28 0.09 -11.14 16 26 C -0.05 -0.91 8.94 -38.98 -0.35 -1.26 16 27 H 0.05 0.67 7.24 -51.93 -0.38 0.29 16 28 H 0.07 1.31 8.08 -51.93 -0.42 0.89 16 29 H 0.07 1.05 5.51 -51.93 -0.29 0.77 16 30 H 0.03 0.94 8.07 -51.93 -0.42 0.52 16 31 H 0.05 1.40 7.37 -51.93 -0.38 1.02 16 32 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 33 H 0.14 1.70 5.69 -52.49 -0.30 1.40 16 34 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 35 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 36 H 0.09 0.64 8.04 -51.93 -0.42 0.22 16 37 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.10 0.27 8.14 -51.92 -0.42 -0.16 16 40 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 41 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.42 3.61 8.88 -40.82 -0.36 3.25 16 43 H 0.13 2.58 8.06 -52.49 -0.42 2.16 16 LS Contribution 358.65 15.07 5.40 5.40 Total: -1.00 -39.16 358.65 -9.11 -48.27 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -5.89 Total: 0.32 kcal Atomic # 6 Polarization: 12.88 SS G_CDS: -3.29 Total: 9.59 kcal Atomic # 7 Polarization: -55.21 SS G_CDS: -0.50 Total: -55.71 kcal Atomic # 8 Polarization: -25.82 SS G_CDS: 0.18 Total: -25.65 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.02 Total: 17.76 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -39.16 -9.11 -48.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081406337.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.747 kcal (2) G-P(sol) polarization free energy of solvation -39.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds