Wall clock time and date at job start Tue Mar 31 2020 11:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99771 * 2 1 4 4 C 1.50699 * 109.47111 * 270.00104 * 3 2 1 5 5 H 1.08007 * 120.00126 * 359.97438 * 4 3 2 6 6 C 1.37878 * 120.00176 * 180.02562 * 4 3 2 7 7 N 1.31508 * 119.99777 * 359.97438 * 6 4 3 8 8 Si 1.86799 * 120.00050 * 179.97438 * 6 4 3 9 9 H 1.48505 * 109.47328 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47234 * 119.99834 * 8 6 4 11 11 H 1.48503 * 109.47259 * 239.99861 * 8 6 4 12 12 C 1.34775 * 120.00075 * 179.97438 * 2 1 3 13 13 O 1.21550 * 119.99861 * 184.27075 * 12 2 1 14 14 C 1.47857 * 120.00144 * 4.26169 * 12 2 1 15 15 C 1.39620 * 120.11166 * 318.79021 * 14 12 2 16 16 C 1.37986 * 119.99268 * 180.02562 * 15 14 12 17 17 C 1.38250 * 120.22053 * 359.74303 * 16 15 14 18 18 C 1.38949 * 120.22554 * 0.51200 * 17 16 15 19 19 N 1.39975 * 119.99606 * 179.76717 * 18 17 16 20 20 C 1.46387 * 119.33016 * 291.94647 * 19 18 17 21 21 C 1.53244 * 109.15219 * 209.08862 * 20 19 18 22 22 C 1.53500 * 108.42823 * 304.37884 * 21 20 19 23 23 N 1.46379 * 109.01251 * 55.79016 * 22 21 20 24 24 C 1.34129 * 121.34415 * 330.54650 * 23 22 21 25 25 O 1.21592 * 118.69936 * 180.80195 * 24 23 22 26 26 C 1.38625 * 120.00252 * 359.49046 * 18 17 16 27 27 H 1.09003 * 109.46830 * 271.01056 * 1 2 3 28 28 H 1.08998 * 109.46859 * 31.01139 * 1 2 3 29 29 H 1.08996 * 109.46847 * 151.01760 * 1 2 3 30 30 H 1.09003 * 109.47396 * 29.99838 * 3 2 1 31 31 H 1.08997 * 109.47098 * 149.99831 * 3 2 1 32 32 H 0.97009 * 120.00129 * 179.97438 * 7 6 4 33 33 H 1.07998 * 120.00203 * 359.97438 * 15 14 12 34 34 H 1.07997 * 119.88685 * 180.02562 * 16 15 14 35 35 H 1.08002 * 119.88549 * 180.27702 * 17 16 15 36 36 H 1.09001 * 109.52332 * 328.98305 * 20 19 18 37 37 H 1.08991 * 109.52522 * 89.11834 * 20 19 18 38 38 H 1.09000 * 109.62334 * 64.24063 * 21 20 19 39 39 H 1.09007 * 109.61731 * 184.79690 * 21 20 19 40 40 H 1.09007 * 109.70498 * 295.86185 * 22 21 20 41 41 H 1.08996 * 109.48098 * 175.59016 * 22 21 20 42 42 H 0.97009 * 119.32556 * 150.82362 * 23 22 21 43 43 H 1.08000 * 120.11073 * 180.23811 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0981 1.0958 -2.2418 6 6 3.1268 2.8775 -1.6728 7 7 3.5541 3.6176 -0.6732 8 14 3.4387 3.4164 -3.4340 9 1 2.8617 2.4158 -4.3674 10 1 2.8016 4.7373 -3.6677 11 1 4.9014 3.5242 -3.6670 12 6 2.1390 -1.1672 0.0005 13 8 3.3519 -1.1686 0.0789 14 6 1.4028 -2.4460 -0.0941 15 6 0.2170 -2.6261 0.6207 16 6 -0.4677 -3.8207 0.5310 17 6 0.0134 -4.8402 -0.2692 18 6 1.1953 -4.6727 -0.9804 19 7 1.6806 -5.7099 -1.7854 20 6 2.1693 -6.9377 -1.1556 21 6 3.2497 -7.5630 -2.0445 22 6 2.6602 -7.7797 -3.4451 23 7 2.1496 -6.5042 -3.9502 24 6 1.6889 -5.5584 -3.1181 25 8 1.2623 -4.5225 -3.5906 26 6 1.8908 -3.4764 -0.8971 27 1 -0.3633 0.0181 1.0275 28 1 -0.3633 0.8808 -0.5295 29 1 -0.3633 -0.8989 -0.4979 30 1 1.6084 2.0284 0.5138 31 1 3.1499 1.1385 0.5138 32 1 4.0316 4.4432 -0.8505 33 1 -0.1638 -1.8308 1.2443 34 1 -1.3850 -3.9580 1.0843 35 1 -0.5293 -5.7714 -0.3389 36 1 2.5924 -6.7027 -0.1789 37 1 1.3438 -7.6392 -1.0358 38 1 4.1074 -6.8931 -2.1045 39 1 3.5586 -8.5210 -1.6261 40 1 1.8463 -8.5031 -3.3935 41 1 3.4372 -8.1514 -4.1131 42 1 2.1407 -6.3412 -4.9064 43 1 2.8076 -3.3430 -1.4521 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081406337.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:25 Heat of formation + Delta-G solvation = -42.724616 kcal Electronic energy + Delta-G solvation = -26504.950017 eV Core-core repulsion = 22742.637275 eV Total energy + Delta-G solvation = -3762.312742 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.17068 -41.10947 -39.25028 -37.58062 -36.77764 -35.97082 -34.77249 -32.34025 -32.22035 -30.88677 -29.53555 -27.63709 -26.75380 -25.77617 -24.80877 -23.65343 -23.04840 -21.10426 -19.81834 -18.77259 -18.73325 -18.47129 -17.67769 -17.59930 -17.24742 -17.04915 -16.45506 -16.35316 -16.01075 -15.67687 -15.20911 -14.82177 -14.73753 -14.59406 -14.49553 -14.33064 -13.93393 -13.65015 -13.54326 -13.30185 -12.99834 -12.88866 -12.71266 -12.62334 -12.42192 -12.37572 -12.29850 -12.23502 -11.75933 -11.30474 -10.91638 -10.70119 -10.36784 -10.08355 -10.00496 -9.51810 -9.46495 -8.28855 -6.43808 -0.07490 0.24651 1.30632 1.33198 1.45790 1.54251 1.75528 1.97158 2.25624 2.37802 2.70969 2.86632 3.00069 3.55192 3.73301 3.86102 3.89904 4.02329 4.14997 4.21988 4.33105 4.37528 4.44366 4.51283 4.62417 4.64423 4.73511 4.77756 4.83596 4.89668 4.95243 5.13277 5.15451 5.24593 5.30354 5.34754 5.41037 5.48296 5.57821 5.76138 5.99223 5.99367 6.01382 6.59393 6.65853 6.68140 7.17633 7.32931 7.45066 8.78599 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015104 B = 0.003559 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.358116 B = 7864.957892 C = 8945.949999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.599 5.599 3 C 0.259 3.741 4 C -0.550 4.550 5 H 0.044 0.956 6 C 0.012 3.988 7 N -0.923 5.923 8 Si 0.967 3.033 9 H -0.276 1.276 10 H -0.261 1.261 11 H -0.277 1.277 12 C 0.537 3.463 13 O -0.599 6.599 14 C -0.129 4.129 15 C -0.089 4.089 16 C -0.096 4.096 17 C -0.090 4.090 18 C 0.141 3.859 19 N -0.580 5.580 20 C 0.103 3.897 21 C -0.151 4.151 22 C 0.104 3.896 23 N -0.729 5.729 24 C 0.698 3.302 25 O -0.643 6.643 26 C -0.080 4.080 27 H 0.089 0.911 28 H 0.067 0.933 29 H 0.086 0.914 30 H 0.035 0.965 31 H 0.001 0.999 32 H 0.270 0.730 33 H 0.156 0.844 34 H 0.183 0.817 35 H 0.164 0.836 36 H 0.088 0.912 37 H 0.101 0.899 38 H 0.057 0.943 39 H 0.139 0.861 40 H 0.091 0.909 41 H 0.109 0.891 42 H 0.418 0.582 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.149 -29.516 0.950 31.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.329 5.329 3 C 0.138 3.862 4 C -0.589 4.589 5 H 0.062 0.938 6 C -0.187 4.187 7 N -0.563 5.563 8 Si 0.791 3.209 9 H -0.200 1.200 10 H -0.185 1.185 11 H -0.203 1.203 12 C 0.326 3.674 13 O -0.482 6.482 14 C -0.132 4.132 15 C -0.107 4.107 16 C -0.114 4.114 17 C -0.109 4.109 18 C 0.049 3.951 19 N -0.313 5.313 20 C -0.017 4.017 21 C -0.189 4.189 22 C -0.018 4.018 23 N -0.387 5.387 24 C 0.399 3.601 25 O -0.525 6.525 26 C -0.101 4.101 27 H 0.107 0.893 28 H 0.086 0.914 29 H 0.105 0.895 30 H 0.053 0.947 31 H 0.020 0.980 32 H 0.079 0.921 33 H 0.174 0.826 34 H 0.201 0.799 35 H 0.182 0.818 36 H 0.106 0.894 37 H 0.119 0.881 38 H 0.075 0.925 39 H 0.157 0.843 40 H 0.109 0.891 41 H 0.127 0.873 42 H 0.256 0.744 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -9.644 -28.878 0.966 30.461 hybrid contribution 1.101 1.149 -1.421 2.133 sum -8.543 -27.729 -0.455 29.019 Atomic orbital electron populations 1.22294 0.77789 1.03878 1.03065 1.48082 1.08624 1.06079 1.70113 1.18838 0.91369 0.79905 0.96088 1.21705 1.37433 1.06816 0.92938 0.93768 1.25814 0.94627 0.96185 1.02114 1.70038 1.38595 1.14797 1.32826 0.85391 0.78129 0.78499 0.78926 1.20048 1.18523 1.20293 1.19032 0.86863 0.85036 0.76427 1.90681 1.16334 1.88178 1.52983 1.19729 0.98219 0.92882 1.02395 1.21856 0.91629 0.99750 0.97493 1.21445 1.00946 0.90770 0.98252 1.21693 0.92240 1.01353 0.95644 1.17273 0.94627 0.87585 0.95586 1.44400 1.66089 1.17717 1.03064 1.22077 0.98354 0.83882 0.97427 1.22334 0.97230 1.04062 0.95309 1.21964 1.00177 0.83806 0.95887 1.45006 1.66773 1.17392 1.09484 1.15812 0.78800 0.83592 0.81905 1.90997 1.55442 1.30173 1.75848 1.21045 0.98497 0.93490 0.97079 0.89318 0.91387 0.89533 0.94737 0.98047 0.92124 0.82632 0.79942 0.81837 0.89355 0.88111 0.92455 0.84304 0.89115 0.87295 0.74367 0.89842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.43 8.92 127.77 1.14 3.57 16 2 N -0.60 -28.82 2.86 -854.56 -2.44 -31.26 16 3 C 0.26 15.08 5.20 85.63 0.45 15.52 16 4 C -0.55 -34.47 9.39 25.60 0.24 -34.23 16 5 H 0.04 2.83 7.81 -2.91 -0.02 2.81 16 6 C 0.01 0.74 5.46 84.66 0.46 1.20 16 7 N -0.92 -57.92 13.29 21.45 0.28 -57.64 16 8 Si 0.97 47.95 29.54 68.60 2.03 49.97 16 9 H -0.28 -13.72 7.11 99.48 0.71 -13.02 16 10 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 11 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 12 C 0.54 26.69 7.33 86.79 0.64 27.33 16 13 O -0.60 -35.90 16.49 -3.87 -0.06 -35.96 16 14 C -0.13 -4.90 5.16 -20.10 -0.10 -5.00 16 15 C -0.09 -2.31 7.49 22.54 0.17 -2.14 16 16 C -0.10 -1.73 10.02 22.21 0.22 -1.50 16 17 C -0.09 -1.78 9.84 22.44 0.22 -1.56 16 18 C 0.14 4.01 4.63 38.10 0.18 4.19 16 19 N -0.58 -14.03 2.87 -649.58 -1.86 -15.90 16 20 C 0.10 1.30 6.40 86.48 0.55 1.85 16 21 C -0.15 -1.29 6.22 30.84 0.19 -1.10 16 22 C 0.10 0.83 7.22 86.57 0.62 1.45 16 23 N -0.73 -13.60 5.58 -479.42 -2.68 -16.27 16 24 C 0.70 20.30 8.05 179.46 1.44 21.74 16 25 O -0.64 -26.46 16.56 -4.01 -0.07 -26.53 16 26 C -0.08 -3.07 8.94 22.66 0.20 -2.87 16 27 H 0.09 2.29 7.24 -2.39 -0.02 2.27 16 28 H 0.07 2.39 8.08 -2.39 -0.02 2.37 16 29 H 0.09 2.62 5.51 -2.39 -0.01 2.60 16 30 H 0.03 1.97 8.07 -2.39 -0.02 1.95 16 31 H 0.00 0.09 7.37 -2.39 -0.02 0.08 16 32 H 0.27 15.69 8.31 -92.70 -0.77 14.92 16 33 H 0.16 3.37 5.69 -2.91 -0.02 3.35 16 34 H 0.18 1.52 8.06 -2.91 -0.02 1.50 16 35 H 0.16 1.99 8.06 -2.91 -0.02 1.96 16 36 H 0.09 1.11 8.04 -2.39 -0.02 1.09 16 37 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.14 0.13 8.14 -2.38 -0.02 0.11 16 40 H 0.09 0.36 8.14 -2.38 -0.02 0.34 16 41 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 42 H 0.42 7.19 8.88 -92.70 -0.82 6.36 16 43 H 0.08 3.83 8.06 -2.91 -0.02 3.81 16 Total: -1.00 -96.86 358.65 2.04 -94.82 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: 0.21 Total: 10.30 kcal Atomic # 6 Polarization: 21.83 SS G_CDS: 6.62 Total: 28.46 kcal Atomic # 7 Polarization: -114.37 SS G_CDS: -6.70 Total: -121.06 kcal Atomic # 8 Polarization: -62.36 SS G_CDS: -0.13 Total: -62.49 kcal Atomic # 14 Polarization: 47.95 SS G_CDS: 2.03 Total: 49.97 kcal Total: -96.86 2.04 -94.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081406337.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.098 kcal (2) G-P(sol) polarization free energy of solvation -96.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds