Wall clock time and date at job start Tue Mar 31 2020 11:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46495 * 119.99565 * 2 1 4 4 C 1.50698 * 109.47251 * 270.00282 * 3 2 1 5 5 H 1.07995 * 120.00434 * 0.02562 * 4 3 2 6 6 C 1.37881 * 119.99952 * 180.02562 * 4 3 2 7 7 N 1.31518 * 120.00204 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 120.00108 * 179.97438 * 6 4 3 9 9 H 1.48505 * 109.46954 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47355 * 119.99918 * 8 6 4 11 11 H 1.48501 * 109.47173 * 240.00106 * 8 6 4 12 12 C 1.34774 * 119.99945 * 180.02562 * 2 1 3 13 13 O 1.21592 * 119.99737 * 179.97438 * 12 2 1 14 14 N 1.34776 * 120.00314 * 0.02562 * 12 2 1 15 15 C 1.40108 * 119.99867 * 184.58685 * 14 12 2 16 16 C 1.38882 * 120.00128 * 324.90142 * 15 14 12 17 17 C 1.38036 * 120.01897 * 180.02562 * 16 15 14 18 18 C 1.38876 * 119.98775 * 0.02562 * 17 16 15 19 19 C 1.38863 * 119.98171 * 359.97438 * 18 17 16 20 20 C 1.38046 * 120.03761 * 0.02562 * 19 18 17 21 21 C 1.50669 * 119.83377 * 179.97438 * 19 18 17 22 22 C 1.52894 * 109.52394 * 326.00231 * 21 19 18 23 23 C 1.50470 * 109.91875 * 48.66801 * 22 21 19 24 24 O 1.21297 * 119.62342 * 144.77999 * 23 22 21 25 25 N 1.34563 * 120.75599 * 324.79051 * 23 22 21 26 26 C 1.46496 * 119.77568 * 180.78408 * 25 23 22 27 27 H 1.09008 * 109.47186 * 269.99249 * 1 2 3 28 28 H 1.08998 * 109.47610 * 30.00099 * 1 2 3 29 29 H 1.09003 * 109.47323 * 150.00038 * 1 2 3 30 30 H 1.09002 * 109.47336 * 30.00238 * 3 2 1 31 31 H 1.09000 * 109.47093 * 149.99926 * 3 2 1 32 32 H 0.96999 * 120.00498 * 180.02562 * 7 6 4 33 33 H 0.96998 * 119.99826 * 4.58074 * 14 12 2 34 34 H 1.08000 * 119.99004 * 359.97438 * 16 15 14 35 35 H 1.07998 * 120.00940 * 180.02562 * 17 16 15 36 36 H 1.07997 * 120.01089 * 180.02562 * 20 19 18 37 37 H 1.09002 * 109.45950 * 86.01641 * 21 19 18 38 38 H 1.08999 * 109.46091 * 205.98943 * 21 19 18 39 39 H 1.09005 * 109.40223 * 168.79477 * 22 21 19 40 40 H 1.09000 * 109.39997 * 288.52888 * 22 21 19 41 41 H 1.08994 * 109.47489 * 269.97315 * 26 25 23 42 42 H 1.09000 * 109.47456 * 29.97835 * 26 25 23 43 43 H 1.09000 * 109.46798 * 149.97633 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4485 1.7038 -1.4208 5 1 2.0973 1.0964 -2.2417 6 6 3.1266 2.8776 -1.6727 7 7 3.5548 3.6173 -0.6731 8 14 3.4385 3.4167 -3.4338 9 1 2.8615 2.4161 -4.3673 10 1 2.8014 4.7375 -3.6675 11 1 4.9012 3.5245 -3.6669 12 6 2.1389 -1.1672 -0.0005 13 8 3.3548 -1.1671 -0.0010 14 7 1.4650 -2.3344 -0.0016 15 6 2.1623 -3.5459 0.0949 16 6 3.4068 -3.6807 -0.5066 17 6 4.0938 -4.8742 -0.4122 18 6 3.5400 -5.9406 0.2840 19 6 2.2957 -5.8056 0.8853 20 6 1.6085 -4.6120 0.7910 21 6 1.6978 -6.9650 1.6394 22 6 2.1026 -8.2762 0.9652 23 6 3.5855 -8.2851 0.7102 24 8 4.2036 -9.3246 0.8032 25 7 4.2338 -7.1530 0.3804 26 6 5.6749 -7.1894 0.1200 27 1 -0.3634 -0.0001 1.0277 28 1 -0.3634 0.8899 -0.5138 29 1 -0.3634 -0.8900 -0.5138 30 1 1.6083 2.0284 0.5139 31 1 3.1498 1.1385 0.5138 32 1 4.0316 4.4432 -0.8502 33 1 0.4974 -2.3357 -0.0690 34 1 3.8368 -2.8517 -1.0490 35 1 5.0617 -4.9787 -0.8797 36 1 0.6409 -4.5074 1.2592 37 1 2.0625 -6.9570 2.6665 38 1 0.6114 -6.8768 1.6391 39 1 1.8420 -9.1124 1.6141 40 1 1.5718 -8.3754 0.0183 41 1 6.2167 -7.0139 1.0493 42 1 5.9473 -8.1659 -0.2805 43 1 5.9332 -6.4154 -0.6028 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085584987.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:16 Heat of formation + Delta-G solvation = -20.784815 kcal Electronic energy + Delta-G solvation = -26074.017475 eV Core-core repulsion = 22312.656114 eV Total energy + Delta-G solvation = -3761.361361 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.27948 -40.02998 -38.49496 -36.09475 -35.01486 -34.65767 -33.65707 -32.49646 -30.27913 -28.87488 -27.80231 -27.45352 -25.82092 -24.56939 -23.47431 -22.16023 -22.06258 -19.87889 -18.85267 -18.04497 -17.51435 -17.01223 -16.59283 -16.52145 -16.11265 -15.13464 -14.90344 -14.82910 -14.42514 -14.33214 -14.19794 -13.94415 -13.68308 -13.21779 -13.07955 -12.99434 -12.70253 -12.44917 -12.36607 -12.23519 -11.97929 -11.93339 -11.64605 -11.30635 -11.23193 -10.92605 -10.63265 -10.59682 -10.20029 -10.10776 -9.68608 -9.42982 -9.24825 -8.82471 -8.47499 -7.82878 -7.43390 -6.08050 -4.13017 1.14610 1.30213 2.36690 2.61281 3.11830 3.27143 3.35115 3.39105 3.58117 3.95353 4.14698 4.34830 4.42073 4.47864 4.51767 4.71283 4.90159 5.01245 5.15514 5.16271 5.26140 5.28997 5.33718 5.40762 5.43880 5.52047 5.55968 5.63386 5.78827 5.84388 5.92543 6.07149 6.19570 6.38406 6.40700 6.61488 6.76462 7.05018 7.21588 7.29959 7.44218 7.60878 7.74898 7.89512 8.18394 8.50935 8.87921 9.16804 9.52588 10.99843 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.023678 B = 0.002766 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.266243 B =10119.728458 C =10902.869268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.612 5.612 3 C 0.259 3.741 4 C -0.527 4.527 5 H 0.058 0.942 6 C 0.061 3.939 7 N -0.894 5.894 8 Si 0.898 3.102 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.283 1.283 12 C 0.697 3.303 13 O -0.569 6.569 14 N -0.696 5.696 15 C 0.165 3.835 16 C -0.090 4.090 17 C -0.129 4.129 18 C 0.128 3.872 19 C -0.106 4.106 20 C -0.121 4.121 21 C -0.073 4.073 22 C -0.136 4.136 23 C 0.517 3.483 24 O -0.537 6.537 25 N -0.551 5.551 26 C 0.072 3.928 27 H 0.046 0.954 28 H 0.079 0.921 29 H 0.050 0.950 30 H 0.035 0.965 31 H 0.046 0.954 32 H 0.263 0.737 33 H 0.402 0.598 34 H 0.152 0.848 35 H 0.131 0.869 36 H 0.130 0.870 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.106 0.894 40 H 0.102 0.898 41 H 0.064 0.936 42 H 0.082 0.918 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.041 -19.729 3.359 21.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.347 5.347 3 C 0.140 3.860 4 C -0.566 4.566 5 H 0.076 0.924 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.209 1.209 12 C 0.399 3.601 13 O -0.445 6.445 14 N -0.346 5.346 15 C 0.068 3.932 16 C -0.110 4.110 17 C -0.150 4.150 18 C 0.034 3.966 19 C -0.109 4.109 20 C -0.142 4.142 21 C -0.110 4.110 22 C -0.176 4.176 23 C 0.307 3.693 24 O -0.413 6.413 25 N -0.275 5.275 26 C -0.069 4.069 27 H 0.064 0.936 28 H 0.098 0.902 29 H 0.068 0.932 30 H 0.053 0.947 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.239 0.761 34 H 0.170 0.830 35 H 0.149 0.851 36 H 0.148 0.852 37 H 0.100 0.900 38 H 0.109 0.891 39 H 0.125 0.875 40 H 0.120 0.880 41 H 0.083 0.917 42 H 0.101 0.899 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -5.700 -20.034 3.471 21.117 hybrid contribution -0.301 0.620 -1.040 1.248 sum -6.001 -19.414 2.430 20.465 Atomic orbital electron populations 1.21599 0.81626 1.02395 1.00447 1.47508 1.05764 1.06335 1.75062 1.19269 0.92413 0.76810 0.97550 1.21479 1.36493 1.06271 0.92340 0.92415 1.24934 0.95337 0.96387 0.97443 1.69939 1.38362 1.14369 1.30669 0.86442 0.78116 0.78299 0.84549 1.19832 1.20969 1.20853 1.15922 0.85575 0.80057 0.78514 1.90884 1.11336 1.85464 1.56795 1.42970 1.09983 1.03592 1.78076 1.17504 0.93592 0.85249 0.96868 1.21353 0.94230 0.97251 0.98214 1.20764 1.01230 0.92191 1.00817 1.17589 0.92822 0.86098 1.00098 1.19139 0.94329 0.95861 1.01533 1.20488 1.01266 0.92156 1.00306 1.20377 1.01562 0.90229 0.98878 1.21672 0.91726 1.00133 1.04019 1.20728 0.90511 0.82425 0.75657 1.90720 1.68999 1.30754 1.50876 1.45323 1.09374 1.06737 1.66042 1.21884 0.78787 1.04035 1.02228 0.93589 0.90241 0.93153 0.94730 0.93617 0.92720 0.76139 0.83040 0.85123 0.85238 0.90032 0.89127 0.87543 0.87972 0.91747 0.89896 0.90024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.21 10.24 59.85 0.61 1.82 16 2 N -0.61 -12.41 2.86 -188.74 -0.54 -12.95 16 3 C 0.26 6.56 5.16 -5.20 -0.03 6.53 16 4 C -0.53 -14.54 9.39 -34.44 -0.32 -14.86 16 5 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 6 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 7 N -0.89 -26.09 13.29 55.43 0.74 -25.36 16 8 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 9 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 C 0.70 14.07 8.12 -86.92 -0.71 13.37 16 13 O -0.57 -13.78 13.35 5.28 0.07 -13.71 16 14 N -0.70 -10.36 5.22 -14.18 -0.07 -10.44 16 15 C 0.16 2.33 6.30 -83.61 -0.53 1.80 16 16 C -0.09 -1.37 8.69 -39.42 -0.34 -1.71 16 17 C -0.13 -1.65 9.33 -39.42 -0.37 -2.02 16 18 C 0.13 1.52 6.33 -83.65 -0.53 0.99 16 19 C -0.11 -1.12 5.65 -104.48 -0.59 -1.71 16 20 C -0.12 -1.32 9.60 -39.42 -0.38 -1.70 16 21 C -0.07 -0.55 6.00 -27.95 -0.17 -0.72 16 22 C -0.14 -1.08 6.07 -28.05 -0.17 -1.26 16 23 C 0.52 6.06 7.46 -11.19 -0.08 5.98 16 24 O -0.54 -7.89 16.61 5.54 0.09 -7.80 16 25 N -0.55 -6.32 3.09 -120.95 -0.37 -6.69 16 26 C 0.07 0.71 10.17 59.84 0.61 1.31 16 27 H 0.05 0.57 8.14 -51.92 -0.42 0.14 16 28 H 0.08 1.19 8.07 -51.93 -0.42 0.77 16 29 H 0.05 0.56 6.30 -51.93 -0.33 0.24 16 30 H 0.03 0.88 8.07 -51.93 -0.42 0.46 16 31 H 0.05 1.31 7.42 -51.93 -0.39 0.93 16 32 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 33 H 0.40 4.58 6.52 -40.82 -0.27 4.32 16 34 H 0.15 2.74 6.22 -52.49 -0.33 2.42 16 35 H 0.13 1.43 6.01 -52.49 -0.32 1.12 16 36 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 37 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.09 0.48 8.06 -51.93 -0.42 0.06 16 39 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.08 0.81 7.40 -51.93 -0.38 0.43 16 43 H 0.08 0.67 5.81 -51.93 -0.30 0.37 16 LS Contribution 354.02 15.07 5.33 5.33 Total: -1.00 -34.95 354.02 -8.51 -43.46 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -5.64 Total: 2.27 kcal Atomic # 6 Polarization: 12.55 SS G_CDS: -3.09 Total: 9.46 kcal Atomic # 7 Polarization: -55.19 SS G_CDS: -0.25 Total: -55.44 kcal Atomic # 8 Polarization: -21.67 SS G_CDS: 0.16 Total: -21.51 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.95 -8.51 -43.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085584987.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.670 kcal (2) G-P(sol) polarization free energy of solvation -34.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds