Wall clock time and date at job start Tue Mar 31 2020 11:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46495 * 119.99565 * 2 1 4 4 C 1.50698 * 109.47251 * 270.00282 * 3 2 1 5 5 H 1.07995 * 120.00434 * 0.02562 * 4 3 2 6 6 C 1.37881 * 119.99952 * 180.02562 * 4 3 2 7 7 N 1.31518 * 120.00204 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 120.00108 * 179.97438 * 6 4 3 9 9 H 1.48505 * 109.46954 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47355 * 119.99918 * 8 6 4 11 11 H 1.48501 * 109.47173 * 240.00106 * 8 6 4 12 12 C 1.34774 * 119.99945 * 180.02562 * 2 1 3 13 13 O 1.21592 * 119.99737 * 179.97438 * 12 2 1 14 14 N 1.34776 * 120.00314 * 0.02562 * 12 2 1 15 15 C 1.40108 * 119.99867 * 184.58685 * 14 12 2 16 16 C 1.38882 * 120.00128 * 324.90142 * 15 14 12 17 17 C 1.38036 * 120.01897 * 180.02562 * 16 15 14 18 18 C 1.38876 * 119.98775 * 0.02562 * 17 16 15 19 19 C 1.38863 * 119.98171 * 359.97438 * 18 17 16 20 20 C 1.38046 * 120.03761 * 0.02562 * 19 18 17 21 21 C 1.50669 * 119.83377 * 179.97438 * 19 18 17 22 22 C 1.52894 * 109.52394 * 326.00231 * 21 19 18 23 23 C 1.50470 * 109.91875 * 48.66801 * 22 21 19 24 24 O 1.21297 * 119.62342 * 144.77999 * 23 22 21 25 25 N 1.34563 * 120.75599 * 324.79051 * 23 22 21 26 26 C 1.46496 * 119.77568 * 180.78408 * 25 23 22 27 27 H 1.09008 * 109.47186 * 269.99249 * 1 2 3 28 28 H 1.08998 * 109.47610 * 30.00099 * 1 2 3 29 29 H 1.09003 * 109.47323 * 150.00038 * 1 2 3 30 30 H 1.09002 * 109.47336 * 30.00238 * 3 2 1 31 31 H 1.09000 * 109.47093 * 149.99926 * 3 2 1 32 32 H 0.96999 * 120.00498 * 180.02562 * 7 6 4 33 33 H 0.96998 * 119.99826 * 4.58074 * 14 12 2 34 34 H 1.08000 * 119.99004 * 359.97438 * 16 15 14 35 35 H 1.07998 * 120.00940 * 180.02562 * 17 16 15 36 36 H 1.07997 * 120.01089 * 180.02562 * 20 19 18 37 37 H 1.09002 * 109.45950 * 86.01641 * 21 19 18 38 38 H 1.08999 * 109.46091 * 205.98943 * 21 19 18 39 39 H 1.09005 * 109.40223 * 168.79477 * 22 21 19 40 40 H 1.09000 * 109.39997 * 288.52888 * 22 21 19 41 41 H 1.08994 * 109.47489 * 269.97315 * 26 25 23 42 42 H 1.09000 * 109.47456 * 29.97835 * 26 25 23 43 43 H 1.09000 * 109.46798 * 149.97633 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4485 1.7038 -1.4208 5 1 2.0973 1.0964 -2.2417 6 6 3.1266 2.8776 -1.6727 7 7 3.5548 3.6173 -0.6731 8 14 3.4385 3.4167 -3.4338 9 1 2.8615 2.4161 -4.3673 10 1 2.8014 4.7375 -3.6675 11 1 4.9012 3.5245 -3.6669 12 6 2.1389 -1.1672 -0.0005 13 8 3.3548 -1.1671 -0.0010 14 7 1.4650 -2.3344 -0.0016 15 6 2.1623 -3.5459 0.0949 16 6 3.4068 -3.6807 -0.5066 17 6 4.0938 -4.8742 -0.4122 18 6 3.5400 -5.9406 0.2840 19 6 2.2957 -5.8056 0.8853 20 6 1.6085 -4.6120 0.7910 21 6 1.6978 -6.9650 1.6394 22 6 2.1026 -8.2762 0.9652 23 6 3.5855 -8.2851 0.7102 24 8 4.2036 -9.3246 0.8032 25 7 4.2338 -7.1530 0.3804 26 6 5.6749 -7.1894 0.1200 27 1 -0.3634 -0.0001 1.0277 28 1 -0.3634 0.8899 -0.5138 29 1 -0.3634 -0.8900 -0.5138 30 1 1.6083 2.0284 0.5139 31 1 3.1498 1.1385 0.5138 32 1 4.0316 4.4432 -0.8502 33 1 0.4974 -2.3357 -0.0690 34 1 3.8368 -2.8517 -1.0490 35 1 5.0617 -4.9787 -0.8797 36 1 0.6409 -4.5074 1.2592 37 1 2.0625 -6.9570 2.6665 38 1 0.6114 -6.8768 1.6391 39 1 1.8420 -9.1124 1.6141 40 1 1.5718 -8.3754 0.0183 41 1 6.2167 -7.0139 1.0493 42 1 5.9473 -8.1659 -0.2805 43 1 5.9332 -6.4154 -0.6028 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085584987.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:15 Heat of formation + Delta-G solvation = -43.651385 kcal Electronic energy + Delta-G solvation = -26075.009043 eV Core-core repulsion = 22312.656114 eV Total energy + Delta-G solvation = -3762.352930 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.21457 -41.36372 -39.60613 -37.27228 -36.48601 -35.61133 -35.03638 -34.31368 -31.18658 -30.21107 -29.20883 -28.41128 -27.29467 -25.42330 -25.12753 -23.41072 -22.97469 -21.19580 -19.94281 -19.28392 -18.68504 -18.53235 -17.98593 -17.59185 -17.14783 -16.68984 -16.50980 -15.84643 -15.78079 -15.40556 -15.11681 -14.92685 -14.83146 -14.50209 -14.36095 -14.02841 -13.91502 -13.68283 -13.46154 -13.34336 -13.21978 -13.11210 -12.79793 -12.77678 -12.52856 -12.38889 -12.22912 -12.16578 -11.69546 -11.60886 -11.08271 -10.88751 -10.63450 -10.46173 -9.77127 -9.45276 -8.52912 -8.19922 -6.35232 0.14320 0.35586 1.37252 1.39732 1.45023 1.51161 1.72606 1.81679 2.20232 2.40148 2.82436 3.06947 3.10999 3.38715 3.68035 3.75299 4.01184 4.15164 4.25580 4.29536 4.35345 4.38605 4.39378 4.48782 4.68252 4.74515 4.80462 4.82011 4.88381 4.93413 4.98074 5.01002 5.09214 5.22604 5.22849 5.41678 5.52921 5.53664 5.57753 5.80994 5.97314 6.07531 6.12601 6.28260 6.74156 6.86702 7.09540 7.32138 7.66740 8.85961 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.023678 B = 0.002766 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.266243 B =10119.728458 C =10902.869268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.621 5.621 3 C 0.275 3.725 4 C -0.540 4.540 5 H 0.052 0.948 6 C 0.008 3.992 7 N -0.928 5.928 8 Si 0.966 3.034 9 H -0.268 1.268 10 H -0.269 1.269 11 H -0.283 1.283 12 C 0.692 3.308 13 O -0.621 6.621 14 N -0.673 5.673 15 C 0.140 3.860 16 C -0.116 4.116 17 C -0.134 4.134 18 C 0.126 3.874 19 C -0.099 4.099 20 C -0.100 4.100 21 C -0.068 4.068 22 C -0.131 4.131 23 C 0.508 3.492 24 O -0.573 6.573 25 N -0.555 5.555 26 C 0.066 3.934 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.088 0.912 30 H 0.030 0.970 31 H -0.001 1.001 32 H 0.267 0.733 33 H 0.421 0.579 34 H 0.112 0.888 35 H 0.138 0.862 36 H 0.170 0.830 37 H 0.088 0.912 38 H 0.128 0.872 39 H 0.125 0.875 40 H 0.119 0.881 41 H 0.067 0.933 42 H 0.080 0.920 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.886 -21.552 3.447 23.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.355 5.355 3 C 0.153 3.847 4 C -0.578 4.578 5 H 0.070 0.930 6 C -0.191 4.191 7 N -0.568 5.568 8 Si 0.791 3.209 9 H -0.192 1.192 10 H -0.194 1.194 11 H -0.209 1.209 12 C 0.394 3.606 13 O -0.501 6.501 14 N -0.325 5.325 15 C 0.044 3.956 16 C -0.137 4.137 17 C -0.154 4.154 18 C 0.032 3.968 19 C -0.102 4.102 20 C -0.121 4.121 21 C -0.105 4.105 22 C -0.170 4.170 23 C 0.300 3.700 24 O -0.453 6.453 25 N -0.278 5.278 26 C -0.075 4.075 27 H 0.092 0.908 28 H 0.090 0.910 29 H 0.106 0.894 30 H 0.047 0.953 31 H 0.018 0.982 32 H 0.076 0.924 33 H 0.261 0.739 34 H 0.130 0.870 35 H 0.155 0.845 36 H 0.187 0.813 37 H 0.106 0.894 38 H 0.146 0.854 39 H 0.143 0.857 40 H 0.137 0.863 41 H 0.085 0.915 42 H 0.099 0.901 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -8.624 -21.898 3.560 23.803 hybrid contribution 0.620 1.074 -1.023 1.607 sum -8.004 -20.824 2.538 22.453 Atomic orbital electron populations 1.21911 0.77840 1.03961 1.02744 1.47355 1.08029 1.04828 1.75302 1.18698 0.90970 0.79054 0.95943 1.21740 1.36589 1.06371 0.93139 0.92952 1.25822 0.94994 0.96501 1.01762 1.70050 1.39026 1.14870 1.32880 0.85391 0.77793 0.78388 0.79353 1.19216 1.19423 1.20937 1.16120 0.85099 0.81205 0.78188 1.90855 1.13900 1.86436 1.58887 1.42552 1.10659 1.02174 1.77099 1.17740 0.93665 0.85700 0.98517 1.21113 0.95691 0.97099 0.99821 1.20764 1.01560 0.91879 1.01242 1.17726 0.93487 0.85776 0.99834 1.19581 0.93390 0.96839 1.00404 1.20780 1.02280 0.90584 0.98441 1.20502 1.03612 0.88102 0.98301 1.21764 0.88625 1.01190 1.05405 1.21550 0.92151 0.81658 0.74609 1.90705 1.70162 1.31871 1.52526 1.45478 1.09883 1.06749 1.65706 1.21984 0.78497 1.04310 1.02736 0.90830 0.90962 0.89357 0.95254 0.98242 0.92420 0.73858 0.87021 0.84457 0.81307 0.89364 0.85375 0.85698 0.86310 0.91465 0.90131 0.88952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.09 10.24 127.77 1.31 3.40 16 2 N -0.62 -25.44 2.86 -869.31 -2.48 -27.92 16 3 C 0.28 14.54 5.16 85.63 0.44 14.98 16 4 C -0.54 -30.62 9.39 25.60 0.24 -30.38 16 5 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16 6 C 0.01 0.46 5.46 84.65 0.46 0.93 16 7 N -0.93 -55.58 13.29 21.45 0.28 -55.29 16 8 Si 0.97 44.52 29.54 68.60 2.03 46.55 16 9 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 10 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 11 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 12 C 0.69 28.50 8.12 179.06 1.45 29.95 16 13 O -0.62 -31.93 13.35 -4.01 -0.05 -31.99 16 14 N -0.67 -19.21 5.22 -317.04 -1.66 -20.87 16 15 C 0.14 3.79 6.30 38.12 0.24 4.03 16 16 C -0.12 -3.68 8.69 22.38 0.19 -3.48 16 17 C -0.13 -3.46 9.33 22.37 0.21 -3.26 16 18 C 0.13 2.81 6.33 38.14 0.24 3.05 16 19 C -0.10 -1.75 5.65 -19.77 -0.11 -1.86 16 20 C -0.10 -1.82 9.60 22.37 0.21 -1.61 16 21 C -0.07 -0.69 6.00 29.80 0.18 -0.52 16 22 C -0.13 -1.58 6.07 29.74 0.18 -1.39 16 23 C 0.51 10.98 7.46 87.62 0.65 11.63 16 24 O -0.57 -16.33 16.61 -3.08 -0.05 -16.38 16 25 N -0.55 -12.07 3.09 -655.09 -2.03 -14.10 16 26 C 0.07 1.28 10.17 127.77 1.30 2.58 16 27 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 28 H 0.07 2.07 8.07 -2.39 -0.02 2.05 16 29 H 0.09 1.68 6.30 -2.39 -0.02 1.66 16 30 H 0.03 1.56 8.07 -2.39 -0.02 1.54 16 31 H 0.00 -0.03 7.42 -2.39 -0.02 -0.05 16 32 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 33 H 0.42 8.29 6.52 -92.71 -0.60 7.69 16 34 H 0.11 4.45 6.22 -2.91 -0.02 4.43 16 35 H 0.14 3.17 6.01 -2.91 -0.02 3.15 16 36 H 0.17 1.75 8.06 -2.91 -0.02 1.73 16 37 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.13 0.46 8.06 -2.39 -0.02 0.45 16 39 H 0.12 1.12 8.14 -2.38 -0.02 1.10 16 40 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.08 1.59 7.40 -2.39 -0.02 1.58 16 43 H 0.09 1.54 5.81 -2.39 -0.01 1.52 16 Total: -1.00 -81.51 354.02 3.69 -77.82 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: 0.45 Total: 14.12 kcal Atomic # 6 Polarization: 20.85 SS G_CDS: 7.21 Total: 28.06 kcal Atomic # 7 Polarization: -112.30 SS G_CDS: -5.88 Total: -118.18 kcal Atomic # 8 Polarization: -48.26 SS G_CDS: -0.10 Total: -48.36 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -81.51 3.69 -77.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085584987.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.167 kcal (2) G-P(sol) polarization free energy of solvation -81.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds