Wall clock time and date at job start Tue Mar 31 2020 11:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42901 * 114.00226 * 2 1 4 4 C 1.53001 * 109.47206 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47017 * 179.97438 * 4 3 2 6 6 O 1.42899 * 109.47075 * 179.97438 * 5 4 3 7 7 C 1.42902 * 113.99828 * 180.02562 * 6 5 4 8 8 C 1.53070 * 109.44395 * 89.79670 * 7 6 5 9 9 C 1.53195 * 109.29524 * 181.23525 * 8 7 6 10 10 N 1.46919 * 108.89273 * 305.57804 * 9 8 7 11 11 C 1.34783 * 120.63144 * 233.55709 * 10 9 8 12 12 O 1.21274 * 119.99655 * 0.02562 * 11 10 9 13 13 C 1.50698 * 119.99922 * 179.97438 * 11 10 9 14 14 S 1.81002 * 109.46922 * 180.02562 * 13 11 10 15 15 C 1.76204 * 99.99932 * 180.02562 * 14 13 11 16 16 H 1.07994 * 120.00106 * 359.97438 * 15 14 13 17 17 C 1.38799 * 119.99685 * 179.97438 * 15 14 13 18 18 N 1.31632 * 120.00277 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99781 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46948 * 90.00349 * 19 17 15 21 21 H 1.48500 * 109.47056 * 210.00208 * 19 17 15 22 22 H 1.48492 * 109.47222 * 330.00387 * 19 17 15 23 23 C 1.46928 * 118.73982 * 53.53793 * 10 9 8 24 24 C 1.53039 * 109.45918 * 210.00158 * 7 6 5 25 25 H 1.09001 * 109.47013 * 299.99925 * 1 2 3 26 26 H 1.08997 * 109.47477 * 59.99926 * 1 2 3 27 27 H 1.09004 * 109.47537 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47035 * 59.99729 * 3 2 1 29 29 H 1.09006 * 109.47154 * 300.00170 * 3 2 1 30 30 H 1.08995 * 109.47238 * 60.00222 * 4 3 2 31 31 H 1.08999 * 109.46823 * 299.99694 * 4 3 2 32 32 H 1.09000 * 109.47112 * 59.99619 * 5 4 3 33 33 H 1.09006 * 109.47266 * 299.99943 * 5 4 3 34 34 H 1.09007 * 109.45850 * 329.96828 * 7 6 5 35 35 H 1.08997 * 109.38860 * 61.35712 * 8 7 6 36 36 H 1.09003 * 109.62046 * 301.25055 * 8 7 6 37 37 H 1.09002 * 109.58720 * 185.71834 * 9 8 7 38 38 H 1.08996 * 109.58651 * 65.43731 * 9 8 7 39 39 H 1.09001 * 109.47385 * 300.00399 * 13 11 10 40 40 H 1.08997 * 109.47457 * 60.00250 * 13 11 10 41 41 H 0.96997 * 119.99912 * 179.97438 * 18 17 15 42 42 H 1.08998 * 109.58787 * 66.18123 * 23 10 9 43 43 H 1.09007 * 109.58600 * 186.46436 * 23 10 9 44 44 H 1.09002 * 109.49876 * 58.67502 * 24 7 6 45 45 H 1.09005 * 109.52615 * 298.59752 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 4.1578 2.5823 -0.0013 6 8 5.5823 2.4695 -0.0013 7 6 6.2648 3.7250 -0.0013 8 6 6.5036 4.1751 1.4421 9 6 7.2077 5.5357 1.4381 10 7 8.4269 5.4380 0.6241 11 6 9.6212 5.8057 1.1291 12 8 9.6967 6.2215 2.2659 13 6 10.8627 5.6991 0.2817 14 16 12.2942 6.2630 1.2351 15 6 13.5672 6.0377 0.0378 16 1 13.3255 5.6513 -0.9412 17 6 14.8807 6.3568 0.3531 18 7 15.1755 6.8273 1.5466 19 14 16.2304 6.1173 -0.9159 20 1 16.3827 7.3585 -1.7168 21 1 17.5099 5.8131 -0.2262 22 1 15.8717 4.9900 -1.8134 23 6 8.3195 4.9315 -0.7510 24 6 7.6062 3.5761 -0.7228 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 1.6886 1.8464 0.8900 29 1 1.6886 1.8464 -0.8900 30 1 3.8567 0.6439 -0.8908 31 1 3.8574 0.6436 0.8891 32 1 3.8365 3.1235 0.8887 33 1 3.8357 3.1230 -0.8913 34 1 5.6564 4.4690 -0.5157 35 1 7.1304 3.4425 1.9506 36 1 5.5491 4.2610 1.9614 37 1 7.4711 5.8138 2.4586 38 1 6.5443 6.2892 1.0137 39 1 11.0111 4.6612 -0.0165 40 1 10.7504 6.3199 -0.6072 41 1 16.0934 7.0499 1.7670 42 1 7.7457 5.6340 -1.3554 43 1 9.3164 4.8133 -1.1758 44 1 7.4343 3.2342 -1.7435 45 1 8.2250 2.8501 -0.1953 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126681652.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:44 Heat of formation + Delta-G solvation = -138.061105 kcal Electronic energy + Delta-G solvation = -23767.379903 eV Core-core repulsion = 20104.084261 eV Total energy + Delta-G solvation = -3663.295642 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.10665 -38.78655 -38.22718 -36.38788 -33.42373 -32.42534 -31.95646 -31.28528 -28.89993 -27.53822 -25.58867 -25.42732 -24.25864 -23.39297 -22.05706 -21.08383 -19.11147 -17.75122 -17.42307 -16.86562 -16.84517 -16.34125 -15.76317 -15.56397 -15.34976 -15.24624 -14.81185 -14.78501 -14.34610 -13.99973 -13.76582 -13.42568 -13.09436 -12.92448 -12.67343 -12.55672 -12.30075 -12.25321 -11.94179 -11.74975 -11.64036 -11.42795 -11.37552 -11.06602 -11.05246 -11.01363 -10.78072 -10.75130 -10.17916 -9.82588 -9.75493 -9.35168 -9.06294 -8.58633 -8.22329 -6.49878 -6.21219 -3.91931 2.85696 2.92384 3.06500 3.22711 3.26258 3.30739 3.58642 3.66996 4.20494 4.43138 4.46431 4.55448 4.61186 4.71551 4.80286 4.83209 4.85086 4.87610 4.94685 4.98789 5.00863 5.06332 5.10872 5.13961 5.19349 5.30211 5.32800 5.47020 5.57408 5.60750 5.65882 5.67279 5.71953 5.86460 5.90995 5.92366 6.07272 6.11348 6.61200 6.63700 6.93665 7.52703 7.60012 8.35498 8.54510 9.24066 10.86201 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.033135 B = 0.001933 C = 0.001864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.821505 B =14485.090560 C =15014.888703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.391 6.391 3 C 0.065 3.935 4 C -0.120 4.120 5 C 0.066 3.934 6 O -0.379 6.379 7 C 0.094 3.906 8 C -0.155 4.155 9 C 0.116 3.884 10 N -0.622 5.622 11 C 0.536 3.464 12 O -0.516 6.516 13 C -0.151 4.151 14 S -0.061 6.061 15 C -0.535 4.535 16 H 0.073 0.927 17 C 0.074 3.926 18 N -0.867 5.867 19 Si 0.919 3.081 20 H -0.277 1.277 21 H -0.282 1.282 22 H -0.272 1.272 23 C 0.112 3.888 24 C -0.132 4.132 25 H 0.042 0.958 26 H 0.041 0.959 27 H 0.087 0.913 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.050 0.950 33 H 0.050 0.950 34 H 0.062 0.938 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.097 0.903 38 H 0.063 0.937 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.268 0.732 42 H 0.068 0.932 43 H 0.097 0.903 44 H 0.082 0.918 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.150 -8.937 -6.426 30.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.310 6.310 3 C -0.012 4.012 4 C -0.157 4.157 5 C -0.011 4.011 6 O -0.298 6.298 7 C 0.036 3.964 8 C -0.194 4.194 9 C -0.007 4.007 10 N -0.359 5.359 11 C 0.324 3.676 12 O -0.390 6.390 13 C -0.302 4.302 14 S 0.165 5.835 15 C -0.684 4.684 16 H 0.091 0.909 17 C -0.135 4.135 18 N -0.503 5.503 19 Si 0.745 3.255 20 H -0.203 1.203 21 H -0.207 1.207 22 H -0.197 1.197 23 C -0.012 4.012 24 C -0.170 4.170 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.105 0.895 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.096 0.904 36 H 0.092 0.908 37 H 0.115 0.885 38 H 0.081 0.919 39 H 0.108 0.892 40 H 0.108 0.892 41 H 0.078 0.922 42 H 0.087 0.913 43 H 0.115 0.885 44 H 0.100 0.900 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -27.674 -8.587 -4.603 29.339 hybrid contribution 0.309 -0.197 -2.170 2.201 sum -27.366 -8.784 -6.773 29.528 Atomic orbital electron populations 1.22760 0.80726 1.02961 1.00060 1.87876 1.19920 1.27776 1.95439 1.22374 0.93550 0.84897 1.00402 1.21370 0.92557 0.96937 1.04854 1.22315 0.81756 0.96747 1.00246 1.87925 1.17277 1.29499 1.95084 1.22097 0.93420 0.85372 0.95513 1.22444 1.01359 0.98209 0.97385 1.21446 0.85569 0.95720 0.97990 1.48144 1.07191 1.66404 1.14149 1.20347 0.83650 0.76177 0.87416 1.90688 1.85340 1.44376 1.18629 1.23561 0.98252 1.05152 1.03218 1.85411 0.94594 1.84192 1.19255 1.22861 0.93909 1.50606 1.00989 0.90921 1.24988 0.97998 0.94543 0.96012 1.70018 1.19884 1.40895 1.19467 0.86170 0.80224 0.78634 0.80487 1.20278 1.20749 1.19686 1.21693 1.02367 0.93912 0.83224 1.22006 0.95216 0.98266 1.01545 0.93957 0.93991 0.89453 0.93054 0.93103 0.90160 0.90110 0.93176 0.93205 0.92043 0.90388 0.90808 0.88490 0.91881 0.89170 0.89226 0.92185 0.91349 0.88507 0.89974 0.90238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.39 -3.25 10.70 -35.23 -0.38 -3.63 16 3 C 0.06 0.42 5.94 37.16 0.22 0.64 16 4 C -0.12 -0.89 5.95 -26.73 -0.16 -1.05 16 5 C 0.07 0.48 5.74 37.16 0.21 0.70 16 6 O -0.38 -3.80 9.99 -35.23 -0.35 -4.15 16 7 C 0.09 0.87 2.57 -26.67 -0.07 0.80 16 8 C -0.16 -1.57 5.70 -26.59 -0.15 -1.72 16 9 C 0.12 1.38 6.43 -3.71 -0.02 1.35 16 10 N -0.62 -8.77 2.97 -172.77 -0.51 -9.29 16 11 C 0.54 10.22 7.72 -10.98 -0.08 10.14 16 12 O -0.52 -11.84 15.27 5.56 0.08 -11.76 16 13 C -0.15 -3.07 4.50 36.00 0.16 -2.91 16 14 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 15 C -0.54 -15.24 9.50 30.94 0.29 -14.94 16 16 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 17 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 18 N -0.87 -26.18 13.22 55.49 0.73 -25.45 16 19 Si 0.92 21.39 29.55 -169.99 -5.02 16.36 16 20 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 23 C 0.11 1.19 6.34 -3.71 -0.02 1.17 16 24 C -0.13 -1.28 5.73 -26.61 -0.15 -1.43 16 25 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 26 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 27 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.05 0.32 7.84 -51.93 -0.41 -0.08 16 33 H 0.05 0.30 8.09 -51.93 -0.42 -0.12 16 34 H 0.06 0.48 7.79 -51.93 -0.40 0.08 16 35 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.07 0.62 7.84 -51.93 -0.41 0.21 16 37 H 0.10 1.34 7.00 -51.93 -0.36 0.98 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.09 1.70 7.69 -51.91 -0.40 1.30 16 40 H 0.09 1.67 7.94 -51.92 -0.41 1.25 16 41 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 42 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.10 1.06 5.93 -51.92 -0.31 0.75 16 44 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 45 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 LS Contribution 380.17 15.07 5.73 5.73 Total: -1.00 -35.02 380.17 -8.43 -43.45 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: -7.74 Total: -3.41 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: 1.24 Total: -3.97 kcal Atomic # 7 Polarization: -34.95 SS G_CDS: 0.22 Total: -34.73 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: -0.64 Total: -19.54 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.02 -8.43 -43.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126681652.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.610 kcal (2) G-P(sol) polarization free energy of solvation -35.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds