Wall clock time and date at job start Tue Mar 31 2020 11:47:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42901 * 114.00226 * 2 1 4 4 C 1.53001 * 109.47206 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47017 * 179.97438 * 4 3 2 6 6 O 1.42899 * 109.47075 * 179.97438 * 5 4 3 7 7 C 1.42902 * 113.99828 * 180.02562 * 6 5 4 8 8 C 1.53070 * 109.44395 * 89.79670 * 7 6 5 9 9 C 1.53195 * 109.29524 * 181.23525 * 8 7 6 10 10 N 1.46919 * 108.89273 * 305.57804 * 9 8 7 11 11 C 1.34783 * 120.63144 * 233.55709 * 10 9 8 12 12 O 1.21274 * 119.99655 * 0.02562 * 11 10 9 13 13 C 1.50698 * 119.99922 * 179.97438 * 11 10 9 14 14 S 1.81002 * 109.46922 * 180.02562 * 13 11 10 15 15 C 1.76204 * 99.99932 * 180.02562 * 14 13 11 16 16 H 1.07994 * 120.00106 * 359.97438 * 15 14 13 17 17 C 1.38799 * 119.99685 * 179.97438 * 15 14 13 18 18 N 1.31632 * 120.00277 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99781 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46948 * 90.00349 * 19 17 15 21 21 H 1.48500 * 109.47056 * 210.00208 * 19 17 15 22 22 H 1.48492 * 109.47222 * 330.00387 * 19 17 15 23 23 C 1.46928 * 118.73982 * 53.53793 * 10 9 8 24 24 C 1.53039 * 109.45918 * 210.00158 * 7 6 5 25 25 H 1.09001 * 109.47013 * 299.99925 * 1 2 3 26 26 H 1.08997 * 109.47477 * 59.99926 * 1 2 3 27 27 H 1.09004 * 109.47537 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47035 * 59.99729 * 3 2 1 29 29 H 1.09006 * 109.47154 * 300.00170 * 3 2 1 30 30 H 1.08995 * 109.47238 * 60.00222 * 4 3 2 31 31 H 1.08999 * 109.46823 * 299.99694 * 4 3 2 32 32 H 1.09000 * 109.47112 * 59.99619 * 5 4 3 33 33 H 1.09006 * 109.47266 * 299.99943 * 5 4 3 34 34 H 1.09007 * 109.45850 * 329.96828 * 7 6 5 35 35 H 1.08997 * 109.38860 * 61.35712 * 8 7 6 36 36 H 1.09003 * 109.62046 * 301.25055 * 8 7 6 37 37 H 1.09002 * 109.58720 * 185.71834 * 9 8 7 38 38 H 1.08996 * 109.58651 * 65.43731 * 9 8 7 39 39 H 1.09001 * 109.47385 * 300.00399 * 13 11 10 40 40 H 1.08997 * 109.47457 * 60.00250 * 13 11 10 41 41 H 0.96997 * 119.99912 * 179.97438 * 18 17 15 42 42 H 1.08998 * 109.58787 * 66.18123 * 23 10 9 43 43 H 1.09007 * 109.58600 * 186.46436 * 23 10 9 44 44 H 1.09002 * 109.49876 * 58.67502 * 24 7 6 45 45 H 1.09005 * 109.52615 * 298.59752 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 4.1578 2.5823 -0.0013 6 8 5.5823 2.4695 -0.0013 7 6 6.2648 3.7250 -0.0013 8 6 6.5036 4.1751 1.4421 9 6 7.2077 5.5357 1.4381 10 7 8.4269 5.4380 0.6241 11 6 9.6212 5.8057 1.1291 12 8 9.6967 6.2215 2.2659 13 6 10.8627 5.6991 0.2817 14 16 12.2942 6.2630 1.2351 15 6 13.5672 6.0377 0.0378 16 1 13.3255 5.6513 -0.9412 17 6 14.8807 6.3568 0.3531 18 7 15.1755 6.8273 1.5466 19 14 16.2304 6.1173 -0.9159 20 1 16.3827 7.3585 -1.7168 21 1 17.5099 5.8131 -0.2262 22 1 15.8717 4.9900 -1.8134 23 6 8.3195 4.9315 -0.7510 24 6 7.6062 3.5761 -0.7228 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 1.6886 1.8464 0.8900 29 1 1.6886 1.8464 -0.8900 30 1 3.8567 0.6439 -0.8908 31 1 3.8574 0.6436 0.8891 32 1 3.8365 3.1235 0.8887 33 1 3.8357 3.1230 -0.8913 34 1 5.6564 4.4690 -0.5157 35 1 7.1304 3.4425 1.9506 36 1 5.5491 4.2610 1.9614 37 1 7.4711 5.8138 2.4586 38 1 6.5443 6.2892 1.0137 39 1 11.0111 4.6612 -0.0165 40 1 10.7504 6.3199 -0.6072 41 1 16.0934 7.0499 1.7670 42 1 7.7457 5.6340 -1.3554 43 1 9.3164 4.8133 -1.1758 44 1 7.4343 3.2342 -1.7435 45 1 8.2250 2.8501 -0.1953 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126681652.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:43 Heat of formation + Delta-G solvation = -161.949771 kcal Electronic energy + Delta-G solvation = -23768.415793 eV Core-core repulsion = 20104.084261 eV Total energy + Delta-G solvation = -3664.331532 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.24937 -39.64310 -38.86171 -37.44864 -34.58305 -34.16637 -32.95659 -32.16112 -30.34187 -27.99522 -27.67313 -26.15792 -25.10034 -24.28396 -22.62515 -22.06468 -20.39861 -19.53126 -18.38157 -17.82859 -17.37875 -17.06808 -16.96065 -16.86594 -16.67905 -16.21857 -15.90975 -15.76269 -15.45223 -15.14801 -14.83086 -14.53885 -14.46803 -14.03085 -13.79218 -13.40618 -13.29860 -13.18934 -13.14589 -12.88553 -12.70534 -12.60679 -12.44691 -12.26788 -12.23636 -11.97619 -11.76464 -11.69415 -11.53841 -11.13832 -10.91178 -10.64110 -10.43070 -10.25798 -9.75407 -8.67376 -8.34226 -6.12829 1.25654 1.43094 1.46125 1.54954 1.57130 2.08654 2.27732 2.35625 3.00013 3.11550 3.25230 3.61092 3.73833 3.85697 3.95292 4.02876 4.08650 4.12146 4.24762 4.26662 4.28735 4.39573 4.43321 4.43595 4.47196 4.51855 4.53347 4.56378 4.64392 4.70227 4.80582 4.82777 4.86229 4.97105 5.08375 5.11822 5.14374 5.27178 5.42147 5.54969 6.19716 6.20023 6.25465 6.31784 7.06957 7.12288 8.75056 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.033135 B = 0.001933 C = 0.001864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.821505 B =14485.090560 C =15014.888703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.422 6.422 3 C 0.064 3.936 4 C -0.117 4.117 5 C 0.064 3.936 6 O -0.399 6.399 7 C 0.096 3.904 8 C -0.148 4.148 9 C 0.113 3.887 10 N -0.610 5.610 11 C 0.533 3.467 12 O -0.567 6.567 13 C -0.124 4.124 14 S -0.154 6.154 15 C -0.546 4.546 16 H 0.084 0.916 17 C 0.014 3.986 18 N -0.912 5.912 19 Si 0.999 3.001 20 H -0.267 1.267 21 H -0.278 1.278 22 H -0.258 1.258 23 C 0.105 3.895 24 C -0.128 4.128 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.093 0.907 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.089 0.911 35 H 0.050 0.950 36 H 0.095 0.905 37 H 0.071 0.929 38 H 0.095 0.905 39 H 0.106 0.894 40 H 0.111 0.889 41 H 0.271 0.729 42 H 0.102 0.898 43 H 0.094 0.906 44 H 0.104 0.896 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.051 -9.182 -9.249 32.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.342 6.342 3 C -0.012 4.012 4 C -0.155 4.155 5 C -0.012 4.012 6 O -0.319 6.319 7 C 0.038 3.962 8 C -0.186 4.186 9 C -0.009 4.009 10 N -0.344 5.344 11 C 0.321 3.679 12 O -0.446 6.446 13 C -0.275 4.275 14 S 0.073 5.927 15 C -0.694 4.694 16 H 0.102 0.898 17 C -0.191 4.191 18 N -0.548 5.548 19 Si 0.821 3.179 20 H -0.192 1.192 21 H -0.204 1.204 22 H -0.182 1.182 23 C -0.017 4.017 24 C -0.166 4.166 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.112 0.888 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.107 0.893 35 H 0.069 0.931 36 H 0.113 0.887 37 H 0.089 0.911 38 H 0.113 0.887 39 H 0.124 0.876 40 H 0.129 0.871 41 H 0.080 0.920 42 H 0.120 0.880 43 H 0.113 0.887 44 H 0.122 0.878 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -29.638 -8.857 -7.463 31.820 hybrid contribution 0.707 -0.185 -1.304 1.495 sum -28.930 -9.042 -8.767 31.553 Atomic orbital electron populations 1.22927 0.79265 1.03808 1.01041 1.87831 1.21674 1.28986 1.95667 1.22427 0.92603 0.84525 1.01637 1.21333 0.93574 0.97044 1.03519 1.22457 0.80363 0.96708 1.01714 1.87910 1.18846 1.29978 1.95159 1.22089 0.93559 0.85884 0.94623 1.22376 1.01510 0.96215 0.98527 1.21632 0.84919 0.97724 0.96632 1.48170 1.06167 1.64399 1.15671 1.20151 0.84759 0.76438 0.86601 1.90670 1.86177 1.47189 1.20543 1.23381 0.95587 1.05942 1.02628 1.85601 0.98942 1.85297 1.22828 1.23202 0.94349 1.50629 1.01190 0.89814 1.26132 1.00831 0.93841 0.98291 1.70188 1.20586 1.42119 1.21907 0.84947 0.76310 0.79199 0.77483 1.19198 1.20376 1.18164 1.22011 1.03170 0.95209 0.81273 1.21961 0.95101 0.96926 1.02636 0.93057 0.92873 0.88827 0.91967 0.91597 0.91212 0.91760 0.92031 0.91239 0.89299 0.93066 0.88673 0.91087 0.88706 0.87607 0.87089 0.92006 0.87990 0.88735 0.87796 0.92514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 113.37 1.25 1.47 16 2 O -0.42 -6.55 10.70 -148.98 -1.59 -8.14 16 3 C 0.06 0.71 5.94 71.98 0.43 1.14 16 4 C -0.12 -1.58 5.95 30.59 0.18 -1.40 16 5 C 0.06 0.76 5.74 71.98 0.41 1.17 16 6 O -0.40 -7.08 9.99 -148.98 -1.49 -8.56 16 7 C 0.10 1.48 2.57 30.63 0.08 1.56 16 8 C -0.15 -2.72 5.70 30.68 0.17 -2.54 16 9 C 0.11 2.51 6.43 86.36 0.56 3.07 16 10 N -0.61 -16.29 2.97 -818.91 -2.44 -18.73 16 11 C 0.53 20.40 7.72 87.66 0.68 21.08 16 12 O -0.57 -27.04 15.27 -3.01 -0.05 -27.08 16 13 C -0.12 -5.02 4.50 71.24 0.32 -4.70 16 14 S -0.15 -8.66 20.57 -56.49 -1.16 -9.82 16 15 C -0.55 -31.29 9.50 67.95 0.65 -30.64 16 16 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 17 C 0.01 0.79 5.49 84.86 0.47 1.25 16 18 N -0.91 -56.30 13.22 21.65 0.29 -56.02 16 19 Si 1.00 43.62 29.55 68.60 2.03 45.65 16 20 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 21 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 22 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 23 C 0.11 1.93 6.34 86.36 0.55 2.47 16 24 C -0.13 -2.14 5.73 30.67 0.18 -1.96 16 25 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 26 H 0.05 0.33 8.14 -2.39 -0.02 0.31 16 27 H 0.09 0.64 8.14 -2.38 -0.02 0.62 16 28 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.07 0.52 8.14 -2.38 -0.02 0.50 16 30 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.06 0.59 7.84 -2.39 -0.02 0.58 16 33 H 0.07 0.57 8.09 -2.38 -0.02 0.55 16 34 H 0.09 0.94 7.79 -2.38 -0.02 0.92 16 35 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.09 1.35 7.84 -2.39 -0.02 1.33 16 37 H 0.07 1.99 7.00 -2.39 -0.02 1.97 16 38 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.11 3.91 7.69 -2.39 -0.02 3.89 16 40 H 0.11 3.98 7.94 -2.40 -0.02 3.96 16 41 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 42 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.09 1.80 5.93 -2.38 -0.01 1.78 16 44 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 Total: -1.00 -79.65 380.17 2.45 -77.20 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: 0.95 Total: 13.55 kcal Atomic # 6 Polarization: -13.95 SS G_CDS: 5.91 Total: -8.04 kcal Atomic # 7 Polarization: -72.60 SS G_CDS: -2.15 Total: -74.75 kcal Atomic # 8 Polarization: -40.66 SS G_CDS: -3.13 Total: -43.79 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Atomic # 16 Polarization: -8.66 SS G_CDS: -1.16 Total: -9.82 kcal Total: -79.65 2.45 -77.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126681652.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.747 kcal (2) G-P(sol) polarization free energy of solvation -79.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds