Wall clock time and date at job start Tue Mar 31 2020 11:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.36002 * 116.99947 * 2 1 4 4 C 1.38702 * 119.97897 * 180.02562 * 3 2 1 5 5 C 1.38106 * 120.02064 * 180.02562 * 4 3 2 6 6 C 1.38864 * 119.97742 * 359.97438 * 5 4 3 7 7 N 1.39942 * 120.01613 * 180.02562 * 6 5 4 8 8 C 1.46506 * 119.99708 * 179.97438 * 7 6 5 9 9 C 1.50699 * 109.46928 * 179.97438 * 8 7 6 10 10 O 1.21282 * 120.00041 * 359.97438 * 9 8 7 11 11 N 1.34779 * 120.00037 * 179.97438 * 9 8 7 12 12 C 1.46500 * 120.00169 * 179.97438 * 11 9 8 13 13 C 1.50700 * 109.47101 * 90.00231 * 12 11 9 14 14 H 1.07998 * 119.99673 * 0.02562 * 13 12 11 15 15 C 1.37872 * 119.99805 * 180.02562 * 13 12 11 16 16 N 1.31516 * 120.00162 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99975 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.46927 * 89.99737 * 17 15 13 19 19 H 1.48497 * 109.47092 * 209.99709 * 17 15 13 20 20 H 1.48501 * 109.46902 * 330.00210 * 17 15 13 21 21 C 1.46499 * 119.99707 * 0.02562 * 11 9 8 22 22 C 1.53000 * 109.47268 * 89.99931 * 21 11 9 23 23 C 1.47195 * 109.47366 * 179.97438 * 22 21 11 24 24 N 9.61938 * 75.37380 * 8.93820 * 2 1 3 25 25 C 1.38861 * 119.96179 * 0.26979 * 6 5 4 26 26 C 1.38108 * 119.98073 * 359.47741 * 25 6 5 27 27 H 1.08998 * 109.46920 * 59.99548 * 1 2 3 28 28 H 1.09002 * 109.47161 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46883 * 299.99816 * 1 2 3 30 30 H 1.08001 * 119.99072 * 0.02562 * 4 3 2 31 31 H 1.07992 * 120.01448 * 179.97438 * 5 4 3 32 32 H 0.96999 * 120.00212 * 359.97438 * 7 6 5 33 33 H 1.09004 * 109.47073 * 299.99487 * 8 7 6 34 34 H 1.09000 * 109.47212 * 59.99569 * 8 7 6 35 35 H 1.08998 * 109.47257 * 210.00712 * 12 11 9 36 36 H 1.09005 * 109.47039 * 330.00407 * 12 11 9 37 37 H 0.96998 * 120.00012 * 179.97438 * 16 15 13 38 38 H 1.09004 * 109.46865 * 209.99250 * 21 11 9 39 39 H 1.08998 * 109.47138 * 329.99800 * 21 11 9 40 40 H 1.09007 * 109.46973 * 300.00153 * 22 21 11 41 41 H 1.08998 * 109.47148 * 59.99875 * 22 21 11 42 42 H 1.08006 * 120.00696 * 179.70598 * 25 6 5 43 43 H 1.07993 * 119.99058 * 180.25441 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 3.4316 1.2839 -0.0005 5 6 4.0595 2.5140 0.0000 6 6 3.3036 3.6788 0.0005 7 7 3.9389 4.9257 0.0005 8 6 3.1410 6.1544 0.0005 9 6 4.0590 7.3495 0.0012 10 8 5.2614 7.1905 0.0021 11 7 3.5439 8.5949 0.0008 12 6 4.4363 9.7568 0.0019 13 6 4.7439 10.1554 -1.4185 14 1 4.3170 9.5992 -2.2399 15 6 5.5704 11.2301 -1.6693 16 7 6.0898 11.9077 -0.6689 17 14 5.9511 11.7247 -3.4299 18 1 4.9420 12.7091 -3.8967 19 1 7.3034 12.3350 -3.4912 20 1 5.9103 10.5230 -4.3015 21 6 2.0916 8.7869 0.0003 22 6 1.5855 8.8540 1.4426 23 6 0.1263 9.0474 1.4421 24 7 -1.0000 9.1946 1.4461 25 6 1.9169 3.6057 0.0062 26 6 1.2907 2.3747 0.0004 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 4.0194 0.3778 -0.0014 31 1 5.1380 2.5700 0.0000 32 1 4.9076 4.9765 0.0005 33 1 2.5122 6.1793 -0.8895 34 1 2.5121 6.1792 0.8905 35 1 3.9514 10.5869 0.5154 36 1 5.3629 9.5026 0.5168 37 1 6.6716 12.6635 -0.8454 38 1 1.8481 9.7168 -0.5137 39 1 1.6149 7.9521 -0.5136 40 1 1.8289 7.9241 1.9567 41 1 2.0621 9.6887 1.9564 42 1 1.3282 4.5112 0.0114 43 1 0.2123 2.3177 0.0006 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126828783.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:33 Heat of formation + Delta-G solvation = -13.068620 kcal Electronic energy + Delta-G solvation = -25369.773552 eV Core-core repulsion = 21608.746791 eV Total energy + Delta-G solvation = -3761.026761 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.20535 -39.52339 -37.90351 -36.95478 -35.47668 -34.58879 -32.94903 -31.13237 -30.96190 -29.82086 -28.02824 -27.07306 -25.83325 -24.13556 -23.14121 -22.32658 -21.36505 -18.88741 -18.25276 -17.81169 -17.36296 -16.64246 -16.41280 -15.86807 -15.79835 -15.65301 -15.22324 -14.80610 -14.78443 -14.51885 -14.03916 -13.90880 -13.59102 -13.31822 -13.17069 -12.92702 -12.65415 -12.60620 -12.52094 -12.29993 -12.13035 -11.97080 -11.83327 -11.40218 -11.34704 -11.06457 -10.95088 -10.82667 -10.69245 -10.27100 -9.80573 -9.59493 -9.26564 -9.05607 -8.54227 -8.01177 -7.13368 -6.16004 -4.21108 1.28653 1.60342 2.65448 2.75237 3.06538 3.18814 3.24153 3.29363 3.31849 3.36489 3.70454 3.80732 4.11428 4.35772 4.71049 4.77825 4.81907 4.92240 4.94069 4.96349 5.02480 5.19454 5.20748 5.23124 5.27478 5.31417 5.39318 5.47363 5.51686 5.72576 5.88311 5.97272 6.03472 6.24905 6.33502 6.57963 6.77254 7.20086 7.22456 7.31155 7.43154 7.51143 7.79332 7.82433 8.07422 8.10046 8.65079 8.84732 9.44846 10.92154 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013094 B = 0.002949 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2137.917838 B = 9491.944778 C =10934.971886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.324 6.324 3 C 0.059 3.941 4 C -0.100 4.100 5 C -0.157 4.157 6 C 0.194 3.806 7 N -0.734 5.734 8 C 0.102 3.898 9 C 0.503 3.497 10 O -0.528 6.528 11 N -0.592 5.592 12 C 0.245 3.755 13 C -0.531 4.531 14 H 0.058 0.942 15 C 0.063 3.937 16 N -0.893 5.893 17 Si 0.897 3.103 18 H -0.280 1.280 19 H -0.285 1.285 20 H -0.274 1.274 21 C 0.114 3.886 22 C -0.051 4.051 23 C 0.216 3.784 24 N -0.443 5.443 25 C -0.166 4.166 26 C -0.156 4.156 27 H 0.051 0.949 28 H 0.094 0.906 29 H 0.051 0.949 30 H 0.128 0.872 31 H 0.129 0.871 32 H 0.412 0.588 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.037 0.963 36 H 0.048 0.952 37 H 0.265 0.735 38 H 0.098 0.902 39 H 0.076 0.924 40 H 0.107 0.893 41 H 0.119 0.881 42 H 0.123 0.877 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.207 -17.291 3.630 20.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.238 6.238 3 C 0.013 3.987 4 C -0.119 4.119 5 C -0.179 4.179 6 C 0.091 3.909 7 N -0.368 5.368 8 C -0.026 4.026 9 C 0.289 3.711 10 O -0.405 6.405 11 N -0.323 5.323 12 C 0.126 3.874 13 C -0.570 4.570 14 H 0.077 0.923 15 C -0.139 4.139 16 N -0.531 5.531 17 Si 0.725 3.275 18 H -0.206 1.206 19 H -0.211 1.211 20 H -0.199 1.199 21 C -0.012 4.012 22 C -0.093 4.093 23 C -0.102 4.102 24 N -0.120 5.120 25 C -0.188 4.188 26 C -0.175 4.175 27 H 0.070 0.930 28 H 0.113 0.887 29 H 0.070 0.930 30 H 0.146 0.854 31 H 0.147 0.853 32 H 0.250 0.750 33 H 0.102 0.898 34 H 0.100 0.900 35 H 0.055 0.945 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.116 0.884 39 H 0.095 0.905 40 H 0.125 0.875 41 H 0.137 0.863 42 H 0.141 0.859 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -11.135 -16.982 3.679 20.638 hybrid contribution 0.654 0.643 -0.971 1.336 sum -10.481 -16.339 2.708 19.599 Atomic orbital electron populations 1.22952 0.79110 1.03394 1.01054 1.86037 1.20712 1.27109 1.89992 1.18747 0.92214 0.83978 1.03755 1.20126 0.91247 0.97767 1.02737 1.20430 0.99656 0.90225 1.07614 1.17750 0.91706 0.85454 0.95976 1.44426 1.09194 1.00912 1.82224 1.21186 0.94231 0.84581 1.02606 1.20214 0.89004 0.84293 0.77605 1.90688 1.15277 1.85042 1.49465 1.48177 1.05793 1.07192 1.71145 1.19404 0.89380 0.80767 0.97849 1.21385 1.29743 1.13684 0.92159 0.92336 1.24914 0.95413 0.96149 0.97453 1.69913 1.32346 1.20107 1.30757 0.86504 0.77751 0.78675 0.84560 1.20602 1.21064 1.19862 1.21367 0.82066 1.04489 0.93268 1.19893 0.81968 1.05991 1.01401 1.29049 0.94995 0.92946 0.93201 1.81211 1.13022 1.09271 1.08516 1.20441 0.92494 0.97609 1.08304 1.20954 0.99513 0.91841 1.05200 0.93005 0.88729 0.93011 0.85411 0.85317 0.74951 0.89790 0.89989 0.94479 0.93448 0.92583 0.88396 0.90529 0.87538 0.86348 0.85884 0.85807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.32 -3.51 10.50 -19.75 -0.21 -3.71 16 3 C 0.06 0.67 6.69 -39.24 -0.26 0.41 16 4 C -0.10 -1.11 9.98 -39.46 -0.39 -1.51 16 5 C -0.16 -1.79 9.89 -39.40 -0.39 -2.18 16 6 C 0.19 2.36 6.66 -83.69 -0.56 1.81 16 7 N -0.73 -9.55 5.71 -59.75 -0.34 -9.89 16 8 C 0.10 1.26 3.95 -5.19 -0.02 1.24 16 9 C 0.50 8.57 7.74 -10.99 -0.09 8.49 16 10 O -0.53 -11.38 15.25 5.56 0.08 -11.30 16 11 N -0.59 -10.04 2.46 -175.06 -0.43 -10.47 16 12 C 0.24 5.52 5.16 -5.19 -0.03 5.50 16 13 C -0.53 -13.71 9.39 -34.44 -0.32 -14.04 16 14 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 15 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 16 N -0.89 -24.90 13.29 55.43 0.74 -24.17 16 17 Si 0.90 20.82 29.54 -169.99 -5.02 15.79 16 18 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 20 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 21 C 0.11 1.38 5.17 -4.04 -0.02 1.36 16 22 C -0.05 -0.48 6.03 -29.52 -0.18 -0.66 16 23 C 0.22 2.42 15.43 -20.77 -0.32 2.10 16 24 N -0.44 -6.19 18.54 42.15 0.78 -5.41 16 25 C -0.17 -1.84 9.31 -39.40 -0.37 -2.20 16 26 C -0.16 -1.65 9.03 -39.46 -0.36 -2.00 16 27 H 0.05 0.32 7.66 -51.93 -0.40 -0.07 16 28 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.05 0.32 7.66 -51.93 -0.40 -0.08 16 30 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 31 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 32 H 0.41 5.84 7.45 -40.82 -0.30 5.54 16 33 H 0.08 0.93 7.22 -51.93 -0.37 0.56 16 34 H 0.08 0.80 6.98 -51.93 -0.36 0.43 16 35 H 0.04 0.83 8.07 -51.93 -0.42 0.41 16 36 H 0.05 1.23 7.42 -51.93 -0.39 0.85 16 37 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 38 H 0.10 1.28 8.07 -51.93 -0.42 0.86 16 39 H 0.08 0.74 6.44 -51.93 -0.33 0.40 16 40 H 0.11 0.79 7.22 -51.93 -0.38 0.42 16 41 H 0.12 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.12 1.17 6.73 -52.48 -0.35 0.82 16 43 H 0.12 1.04 6.29 -52.49 -0.33 0.71 16 LS Contribution 372.02 15.07 5.61 5.61 Total: -1.00 -32.61 372.02 -6.89 -39.50 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -5.69 Total: 2.94 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: -2.41 Total: 1.10 kcal Atomic # 7 Polarization: -50.68 SS G_CDS: 0.75 Total: -49.93 kcal Atomic # 8 Polarization: -14.89 SS G_CDS: -0.12 Total: -15.01 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.61 -6.89 -39.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126828783.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.428 kcal (2) G-P(sol) polarization free energy of solvation -32.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds