Wall clock time and date at job start Tue Mar 31 2020 11:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.36002 * 116.99947 * 2 1 4 4 C 1.38702 * 119.97897 * 180.02562 * 3 2 1 5 5 C 1.38106 * 120.02064 * 180.02562 * 4 3 2 6 6 C 1.38864 * 119.97742 * 359.97438 * 5 4 3 7 7 N 1.39942 * 120.01613 * 180.02562 * 6 5 4 8 8 C 1.46506 * 119.99708 * 179.97438 * 7 6 5 9 9 C 1.50699 * 109.46928 * 179.97438 * 8 7 6 10 10 O 1.21282 * 120.00041 * 359.97438 * 9 8 7 11 11 N 1.34779 * 120.00037 * 179.97438 * 9 8 7 12 12 C 1.46500 * 120.00169 * 179.97438 * 11 9 8 13 13 C 1.50700 * 109.47101 * 90.00231 * 12 11 9 14 14 H 1.07998 * 119.99673 * 0.02562 * 13 12 11 15 15 C 1.37872 * 119.99805 * 180.02562 * 13 12 11 16 16 N 1.31516 * 120.00162 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99975 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.46927 * 89.99737 * 17 15 13 19 19 H 1.48497 * 109.47092 * 209.99709 * 17 15 13 20 20 H 1.48501 * 109.46902 * 330.00210 * 17 15 13 21 21 C 1.46499 * 119.99707 * 0.02562 * 11 9 8 22 22 C 1.53000 * 109.47268 * 89.99931 * 21 11 9 23 23 C 1.47195 * 109.47366 * 179.97438 * 22 21 11 24 24 N 9.61938 * 75.37380 * 8.93820 * 2 1 3 25 25 C 1.38861 * 119.96179 * 0.26979 * 6 5 4 26 26 C 1.38108 * 119.98073 * 359.47741 * 25 6 5 27 27 H 1.08998 * 109.46920 * 59.99548 * 1 2 3 28 28 H 1.09002 * 109.47161 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46883 * 299.99816 * 1 2 3 30 30 H 1.08001 * 119.99072 * 0.02562 * 4 3 2 31 31 H 1.07992 * 120.01448 * 179.97438 * 5 4 3 32 32 H 0.96999 * 120.00212 * 359.97438 * 7 6 5 33 33 H 1.09004 * 109.47073 * 299.99487 * 8 7 6 34 34 H 1.09000 * 109.47212 * 59.99569 * 8 7 6 35 35 H 1.08998 * 109.47257 * 210.00712 * 12 11 9 36 36 H 1.09005 * 109.47039 * 330.00407 * 12 11 9 37 37 H 0.96998 * 120.00012 * 179.97438 * 16 15 13 38 38 H 1.09004 * 109.46865 * 209.99250 * 21 11 9 39 39 H 1.08998 * 109.47138 * 329.99800 * 21 11 9 40 40 H 1.09007 * 109.46973 * 300.00153 * 22 21 11 41 41 H 1.08998 * 109.47148 * 59.99875 * 22 21 11 42 42 H 1.08006 * 120.00696 * 179.70598 * 25 6 5 43 43 H 1.07993 * 119.99058 * 180.25441 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 3.4316 1.2839 -0.0005 5 6 4.0595 2.5140 0.0000 6 6 3.3036 3.6788 0.0005 7 7 3.9389 4.9257 0.0005 8 6 3.1410 6.1544 0.0005 9 6 4.0590 7.3495 0.0012 10 8 5.2614 7.1905 0.0021 11 7 3.5439 8.5949 0.0008 12 6 4.4363 9.7568 0.0019 13 6 4.7439 10.1554 -1.4185 14 1 4.3170 9.5992 -2.2399 15 6 5.5704 11.2301 -1.6693 16 7 6.0898 11.9077 -0.6689 17 14 5.9511 11.7247 -3.4299 18 1 4.9420 12.7091 -3.8967 19 1 7.3034 12.3350 -3.4912 20 1 5.9103 10.5230 -4.3015 21 6 2.0916 8.7869 0.0003 22 6 1.5855 8.8540 1.4426 23 6 0.1263 9.0474 1.4421 24 7 -1.0000 9.1946 1.4461 25 6 1.9169 3.6057 0.0062 26 6 1.2907 2.3747 0.0004 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 4.0194 0.3778 -0.0014 31 1 5.1380 2.5700 0.0000 32 1 4.9076 4.9765 0.0005 33 1 2.5122 6.1793 -0.8895 34 1 2.5121 6.1792 0.8905 35 1 3.9514 10.5869 0.5154 36 1 5.3629 9.5026 0.5168 37 1 6.6716 12.6635 -0.8454 38 1 1.8481 9.7168 -0.5137 39 1 1.6149 7.9521 -0.5136 40 1 1.8289 7.9241 1.9567 41 1 2.0621 9.6887 1.9564 42 1 1.3282 4.5112 0.0114 43 1 0.2123 2.3177 0.0006 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126828783.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:33 Heat of formation + Delta-G solvation = -33.841634 kcal Electronic energy + Delta-G solvation = -25370.674338 eV Core-core repulsion = 21608.746791 eV Total energy + Delta-G solvation = -3761.927547 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.14215 -40.67528 -38.74853 -37.99395 -36.76389 -35.57395 -34.81490 -32.17973 -31.93340 -30.84294 -29.29573 -28.00610 -26.92258 -25.32417 -24.56174 -23.32525 -22.24815 -20.12433 -19.10519 -18.83540 -18.44838 -18.29098 -17.60895 -16.91802 -16.77484 -16.51089 -16.39349 -16.23307 -15.72216 -15.48916 -15.20757 -14.95078 -14.58119 -14.38973 -14.12867 -14.03442 -13.91271 -13.58103 -13.52599 -13.39881 -13.32013 -13.14310 -12.92465 -12.71556 -12.62465 -12.51073 -12.19112 -12.12069 -11.84357 -11.67742 -11.57602 -10.69363 -10.58314 -10.43035 -9.87319 -9.52506 -8.18519 -8.00345 -6.30238 0.47238 0.75875 1.39916 1.42492 1.51245 1.65729 1.81485 1.86879 2.10650 2.42020 2.56544 2.71678 2.97612 3.10964 3.15549 3.67488 3.96715 4.03850 4.07064 4.12139 4.32504 4.38052 4.41927 4.48714 4.49041 4.62753 4.63401 4.69660 4.80976 4.84812 5.06124 5.06727 5.13560 5.22482 5.33743 5.41816 5.52459 5.58744 5.77515 5.85479 6.12037 6.34511 6.60607 6.63649 6.71437 6.79700 6.85845 7.29866 7.44639 8.88256 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013094 B = 0.002949 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2137.917838 B = 9491.944778 C =10934.971886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.342 6.342 3 C 0.049 3.951 4 C -0.112 4.112 5 C -0.166 4.166 6 C 0.179 3.821 7 N -0.744 5.744 8 C 0.114 3.886 9 C 0.498 3.502 10 O -0.583 6.583 11 N -0.592 5.592 12 C 0.259 3.741 13 C -0.539 4.539 14 H 0.054 0.946 15 C 0.012 3.988 16 N -0.925 5.925 17 Si 0.956 3.044 18 H -0.268 1.268 19 H -0.286 1.286 20 H -0.274 1.274 21 C 0.109 3.891 22 C -0.039 4.039 23 C 0.246 3.754 24 N -0.489 5.489 25 C -0.167 4.167 26 C -0.158 4.158 27 H 0.059 0.941 28 H 0.113 0.887 29 H 0.061 0.939 30 H 0.136 0.864 31 H 0.133 0.867 32 H 0.403 0.597 33 H 0.105 0.895 34 H 0.118 0.882 35 H 0.038 0.962 36 H 0.006 0.994 37 H 0.265 0.735 38 H 0.087 0.913 39 H 0.110 0.890 40 H 0.137 0.863 41 H 0.121 0.879 42 H 0.144 0.856 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.406 -18.383 3.268 22.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.257 6.257 3 C 0.004 3.996 4 C -0.131 4.131 5 C -0.188 4.188 6 C 0.077 3.923 7 N -0.377 5.377 8 C -0.013 4.013 9 C 0.287 3.713 10 O -0.463 6.463 11 N -0.322 5.322 12 C 0.138 3.862 13 C -0.578 4.578 14 H 0.072 0.928 15 C -0.188 4.188 16 N -0.565 5.565 17 Si 0.782 3.218 18 H -0.193 1.193 19 H -0.212 1.212 20 H -0.199 1.199 21 C -0.015 4.015 22 C -0.080 4.080 23 C -0.071 4.071 24 N -0.167 5.167 25 C -0.190 4.190 26 C -0.177 4.177 27 H 0.078 0.922 28 H 0.132 0.868 29 H 0.079 0.921 30 H 0.154 0.846 31 H 0.151 0.849 32 H 0.240 0.760 33 H 0.123 0.877 34 H 0.136 0.864 35 H 0.056 0.944 36 H 0.024 0.976 37 H 0.074 0.926 38 H 0.105 0.895 39 H 0.128 0.872 40 H 0.155 0.845 41 H 0.139 0.861 42 H 0.161 0.839 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -13.411 -18.094 3.317 22.765 hybrid contribution 1.315 0.896 -0.845 1.802 sum -12.096 -17.198 2.472 21.170 Atomic orbital electron populations 1.23228 0.77191 1.05048 1.01863 1.86017 1.22787 1.26982 1.89923 1.18968 0.92482 0.84681 1.03508 1.20312 0.91773 0.98039 1.02980 1.20574 1.00094 0.90434 1.07706 1.17896 0.92369 0.85053 0.96961 1.44461 1.08833 1.01403 1.83048 1.21235 0.93057 0.81864 1.05162 1.21057 0.88986 0.85269 0.76015 1.90666 1.17989 1.85870 1.51740 1.48013 1.07317 1.05880 1.70980 1.18845 0.89005 0.82671 0.95680 1.21737 1.29235 1.13263 0.93546 0.92779 1.25698 0.95561 0.96501 1.00993 1.70016 1.33227 1.20716 1.32550 0.85583 0.77631 0.78351 0.80257 1.19284 1.21159 1.19921 1.21608 0.79043 1.05523 0.95326 1.19841 0.80568 1.07753 0.99841 1.29106 0.94816 0.91440 0.91782 1.81257 1.14478 1.10973 1.09956 1.20698 0.92069 0.98632 1.07554 1.21216 1.00684 0.91316 1.04444 0.92191 0.86848 0.92082 0.84610 0.84947 0.76020 0.87697 0.86405 0.94445 0.97624 0.92592 0.89469 0.87151 0.84480 0.86143 0.83868 0.83584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.36 16 2 O -0.34 -6.82 10.50 -93.57 -0.98 -7.80 16 3 C 0.05 1.05 6.69 22.49 0.15 1.20 16 4 C -0.11 -2.41 9.98 22.35 0.22 -2.19 16 5 C -0.17 -3.68 9.89 22.39 0.22 -3.46 16 6 C 0.18 4.05 6.66 38.15 0.25 4.30 16 7 N -0.74 -18.27 5.71 -342.96 -1.96 -20.23 16 8 C 0.11 2.48 3.95 85.63 0.34 2.82 16 9 C 0.50 16.51 7.74 87.66 0.68 17.19 16 10 O -0.58 -25.66 15.25 -3.04 -0.05 -25.71 16 11 N -0.59 -19.47 2.46 -826.14 -2.03 -21.49 16 12 C 0.26 11.90 5.16 85.63 0.44 12.34 16 13 C -0.54 -28.12 9.39 25.60 0.24 -27.88 16 14 H 0.05 2.80 7.81 -2.91 -0.02 2.78 16 15 C 0.01 0.63 5.46 84.65 0.46 1.10 16 16 N -0.93 -52.56 13.29 21.45 0.28 -52.28 16 17 Si 0.96 42.83 29.54 68.60 2.03 44.85 16 18 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 19 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 20 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 21 C 0.11 2.34 5.17 86.38 0.45 2.79 16 22 C -0.04 -0.61 6.03 28.79 0.17 -0.44 16 23 C 0.25 4.82 15.43 89.44 1.38 6.20 16 24 N -0.49 -12.65 18.54 20.00 0.37 -12.28 16 25 C -0.17 -3.19 9.31 22.39 0.21 -2.99 16 26 C -0.16 -2.90 9.03 22.35 0.20 -2.69 16 27 H 0.06 0.59 7.66 -2.39 -0.02 0.57 16 28 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.06 0.58 7.66 -2.39 -0.02 0.56 16 30 H 0.14 2.55 8.06 -2.91 -0.02 2.53 16 31 H 0.13 2.70 8.06 -2.91 -0.02 2.67 16 32 H 0.40 11.44 7.45 -92.71 -0.69 10.75 16 33 H 0.11 1.89 7.22 -2.38 -0.02 1.87 16 34 H 0.12 1.73 6.98 -2.39 -0.02 1.71 16 35 H 0.04 1.70 8.07 -2.39 -0.02 1.68 16 36 H 0.01 0.31 7.42 -2.38 -0.02 0.29 16 37 H 0.27 14.32 8.31 -92.71 -0.77 13.55 16 38 H 0.09 2.10 8.07 -2.38 -0.02 2.09 16 39 H 0.11 1.66 6.44 -2.39 -0.02 1.64 16 40 H 0.14 1.41 7.22 -2.38 -0.02 1.39 16 41 H 0.12 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.14 2.07 6.73 -2.91 -0.02 2.05 16 43 H 0.15 1.94 6.29 -2.91 -0.02 1.92 16 Total: -1.00 -73.23 372.02 4.55 -68.68 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: 0.35 Total: 16.60 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: 6.53 Total: 9.65 kcal Atomic # 7 Polarization: -102.94 SS G_CDS: -3.33 Total: -106.27 kcal Atomic # 8 Polarization: -32.48 SS G_CDS: -1.03 Total: -33.51 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.85 kcal Total: -73.23 4.55 -68.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126828783.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.834 kcal (2) G-P(sol) polarization free energy of solvation -73.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds