Wall clock time and date at job start Tue Mar 31 2020 11:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42904 * 114.00443 * 2 1 4 4 C 1.52993 * 109.47396 * 180.02562 * 3 2 1 5 5 N 1.46505 * 109.47073 * 64.99525 * 4 3 2 6 6 C 1.46493 * 120.00175 * 279.25568 * 5 4 3 7 7 C 1.50702 * 109.47506 * 264.47447 * 6 5 4 8 8 H 1.07989 * 119.99824 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99907 * 179.97438 * 7 6 5 10 10 N 1.31511 * 119.99963 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 119.99740 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47508 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.47076 * 120.00204 * 11 9 7 14 14 H 1.48495 * 109.47380 * 240.00086 * 11 9 7 15 15 C 1.34780 * 119.99677 * 99.26085 * 5 4 3 16 16 O 1.21576 * 119.99842 * 186.55786 * 15 5 4 17 17 C 1.47683 * 119.99902 * 6.55815 * 15 5 4 18 18 C 1.40129 * 119.90359 * 329.52908 * 17 15 5 19 19 C 1.36435 * 120.45621 * 179.97438 * 18 17 15 20 20 C 1.39067 * 120.14741 * 0.02562 * 19 18 17 21 21 C 1.40689 * 120.14605 * 359.97438 * 20 19 18 22 22 C 1.39125 * 119.89905 * 149.50630 * 17 15 5 23 23 N 1.35867 * 106.93599 * 180.26082 * 21 20 19 24 24 C 1.30073 * 109.56232 * 359.59398 * 23 21 20 25 25 N 1.36094 * 110.12168 * 0.41342 * 24 23 21 26 26 C 1.46499 * 126.29639 * 179.74475 * 25 24 23 27 27 H 1.08995 * 109.47449 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47025 * 300.00018 * 1 2 3 29 29 H 1.09003 * 109.47117 * 59.99814 * 1 2 3 30 30 H 1.08994 * 109.46769 * 59.99738 * 3 2 1 31 31 H 1.09008 * 109.46543 * 299.99856 * 3 2 1 32 32 H 1.09006 * 109.47418 * 305.00164 * 4 3 2 33 33 H 1.08997 * 109.47356 * 184.99890 * 4 3 2 34 34 H 1.09003 * 109.47209 * 24.48158 * 6 5 4 35 35 H 1.09008 * 109.47009 * 144.47557 * 6 5 4 36 36 H 0.96999 * 120.00162 * 179.97438 * 10 9 7 37 37 H 1.08001 * 119.77453 * 359.97438 * 18 17 15 38 38 H 1.08002 * 119.92410 * 179.97438 * 19 18 17 39 39 H 1.07999 * 120.24831 * 0.02562 * 22 17 15 40 40 H 1.07992 * 124.93647 * 180.16176 * 24 23 21 41 41 H 1.09007 * 109.47092 * 270.00168 * 26 25 24 42 42 H 1.09000 * 109.47477 * 30.00384 * 26 25 24 43 43 H 1.09006 * 109.46998 * 150.00601 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9756 0.5642 -1.2527 6 6 3.9122 -0.8907 -1.4112 7 6 5.2526 -1.4917 -1.0748 8 1 6.0699 -0.8537 -0.7728 9 6 5.4353 -2.8562 -1.1517 10 7 4.4398 -3.6331 -1.5191 11 14 7.0966 -3.6011 -0.7340 12 1 8.0414 -2.5211 -0.3519 13 1 6.9435 -4.5482 0.3995 14 1 7.6254 -4.3263 -1.9170 15 6 4.4390 1.3322 -2.2588 16 8 4.6918 0.8327 -3.3380 17 6 4.6397 2.7804 -2.0501 18 6 3.8232 3.4760 -1.1484 19 6 3.9991 4.8138 -0.9465 20 6 4.9927 5.4996 -1.6367 21 6 5.8214 4.8168 -2.5458 22 6 5.6391 3.4498 -2.7491 23 7 6.6877 5.7311 -3.0553 24 6 6.4431 6.8988 -2.5372 25 7 5.4109 6.8124 -1.6544 26 6 4.8482 7.9127 -0.8677 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.6886 1.8463 0.8899 31 1 1.6886 1.8463 -0.8901 32 1 3.8515 0.5681 0.8409 33 1 3.9785 2.1764 0.0889 34 1 3.1537 -1.2965 -0.7417 35 1 3.6538 -1.1330 -2.4422 36 1 4.5684 -4.5930 -1.5736 37 1 3.0494 2.9495 -0.6094 38 1 3.3647 5.3416 -0.2498 39 1 6.2688 2.9145 -3.4443 40 1 6.9834 7.8043 -2.7704 41 1 5.3734 7.9841 0.0848 42 1 4.9626 8.8475 -1.4166 43 1 3.7899 7.7253 -0.6859 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127664153.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:59 Heat of formation + Delta-G solvation = 36.713006 kcal Electronic energy + Delta-G solvation = -26650.737120 eV Core-core repulsion = 22891.869051 eV Total energy + Delta-G solvation = -3758.868068 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.25417 -39.66583 -37.53325 -36.70830 -34.96814 -34.38649 -32.64156 -30.61450 -30.23886 -29.13974 -27.49475 -26.84448 -25.97362 -24.06247 -22.87873 -22.57886 -21.92232 -20.79391 -18.93480 -17.86345 -17.26925 -16.55095 -16.33971 -16.01695 -15.94162 -15.35962 -15.22562 -14.78223 -14.56004 -14.18339 -14.12142 -14.00737 -13.51704 -13.40756 -13.32774 -12.96843 -12.92046 -12.18109 -11.93602 -11.74469 -11.68007 -11.55781 -11.21982 -11.00598 -10.83191 -10.66896 -10.49445 -10.29253 -10.06709 -10.01926 -9.49230 -9.39551 -8.94159 -8.35163 -8.27709 -8.16940 -7.54308 -5.90224 -3.93540 0.91846 1.19762 2.39548 2.65135 3.38799 3.41150 3.46240 3.51181 3.81529 4.02596 4.14876 4.25991 4.32936 4.37307 4.56728 4.72484 4.84366 4.91086 4.99917 5.24208 5.29915 5.32433 5.35062 5.41833 5.44671 5.46558 5.54523 5.59362 5.63893 5.73796 5.90498 6.00688 6.23164 6.30029 6.43104 6.46492 6.72053 6.94063 7.34514 7.43141 7.63597 7.71907 7.73863 8.08365 8.39290 8.52698 9.01765 9.18037 9.69902 11.17868 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013193 B = 0.003999 C = 0.003286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.892948 B = 7000.546510 C = 8518.335155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.365 6.365 3 C 0.038 3.962 4 C 0.079 3.921 5 N -0.581 5.581 6 C 0.248 3.752 7 C -0.524 4.524 8 H 0.056 0.944 9 C 0.061 3.939 10 N -0.893 5.893 11 Si 0.895 3.105 12 H -0.274 1.274 13 H -0.285 1.285 14 H -0.284 1.284 15 C 0.548 3.452 16 O -0.532 6.532 17 C -0.128 4.128 18 C -0.100 4.100 19 C -0.122 4.122 20 C 0.058 3.942 21 C 0.036 3.964 22 C -0.002 4.002 23 N -0.487 5.487 24 C 0.251 3.749 25 N -0.499 5.499 26 C 0.081 3.919 27 H 0.085 0.915 28 H 0.034 0.966 29 H 0.036 0.964 30 H 0.054 0.946 31 H 0.050 0.950 32 H 0.088 0.912 33 H 0.110 0.890 34 H 0.054 0.946 35 H 0.038 0.962 36 H 0.261 0.739 37 H 0.158 0.842 38 H 0.124 0.876 39 H 0.142 0.858 40 H 0.213 0.787 41 H 0.074 0.926 42 H 0.087 0.913 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.500 24.360 6.175 25.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.283 6.283 3 C -0.040 4.040 4 C -0.045 4.045 5 N -0.311 5.311 6 C 0.130 3.870 7 C -0.563 4.563 8 H 0.074 0.926 9 C -0.141 4.141 10 N -0.533 5.533 11 Si 0.723 3.277 12 H -0.199 1.199 13 H -0.211 1.211 14 H -0.210 1.210 15 C 0.335 3.665 16 O -0.410 6.410 17 C -0.134 4.134 18 C -0.119 4.119 19 C -0.143 4.143 20 C -0.051 4.051 21 C -0.081 4.081 22 C -0.022 4.022 23 N -0.205 5.205 24 C -0.035 4.035 25 N -0.190 5.190 26 C -0.062 4.062 27 H 0.104 0.896 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.107 0.893 33 H 0.128 0.872 34 H 0.072 0.928 35 H 0.056 0.944 36 H 0.070 0.930 37 H 0.175 0.825 38 H 0.142 0.858 39 H 0.159 0.841 40 H 0.229 0.771 41 H 0.093 0.907 42 H 0.106 0.894 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.729 23.587 5.053 24.581 hybrid contribution 0.094 0.173 0.940 0.960 sum -4.635 23.759 5.993 24.938 Atomic orbital electron populations 1.22722 0.82038 1.02752 0.99077 1.88153 1.18739 1.26312 1.95099 1.23139 0.95230 0.86012 0.99605 1.22341 0.91528 1.00825 0.89815 1.48057 1.60867 1.09879 1.12342 1.19396 0.97344 0.71416 0.98864 1.21527 0.97235 0.92002 1.45504 0.92570 1.24897 0.96785 0.96998 0.95372 1.69956 1.30970 1.04411 1.47950 0.86492 0.84245 0.79081 0.77891 1.19858 1.21096 1.20971 1.18012 0.78678 0.84988 0.84798 1.90762 1.51210 1.74261 1.24758 1.19987 0.98624 0.95137 0.99623 1.21720 1.00120 0.93291 0.96779 1.19554 0.98455 0.93909 1.02369 1.19022 0.99948 0.84491 1.01638 1.18893 0.96123 0.94260 0.98801 1.20387 0.95655 0.89924 0.96279 1.70474 1.24876 0.98915 1.26226 1.25335 0.89481 0.98609 0.90050 1.45248 1.29762 1.07301 1.36710 1.21960 1.00141 0.88181 0.95890 0.89638 0.94719 0.94512 0.92821 0.93214 0.89349 0.87248 0.92768 0.94388 0.92980 0.82487 0.85807 0.84056 0.77070 0.90738 0.89416 0.89812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 101.05 1.11 1.51 16 2 O -0.36 -6.34 8.80 -35.23 -0.31 -6.65 16 3 C 0.04 0.54 5.08 37.15 0.19 0.73 16 4 C 0.08 1.31 5.33 -4.04 -0.02 1.29 16 5 N -0.58 -12.88 2.48 -176.23 -0.44 -13.32 16 6 C 0.25 6.77 4.93 -5.20 -0.03 6.75 16 7 C -0.52 -15.46 9.34 -34.44 -0.32 -15.78 16 8 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 9 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 10 N -0.89 -27.41 13.29 55.43 0.74 -26.68 16 11 Si 0.89 22.68 29.54 -169.99 -5.02 17.66 16 12 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 13 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 14 H -0.28 -7.18 7.11 56.52 0.40 -6.77 16 15 C 0.55 12.34 7.39 -12.40 -0.09 12.25 16 16 O -0.53 -14.30 16.34 5.30 0.09 -14.22 16 17 C -0.13 -2.27 5.57 -105.00 -0.59 -2.86 16 18 C -0.10 -1.35 7.39 -39.52 -0.29 -1.65 16 19 C -0.12 -1.39 9.97 -39.92 -0.40 -1.79 16 20 C 0.06 0.75 6.87 -83.95 -0.58 0.17 16 21 C 0.04 0.58 7.22 -84.72 -0.61 -0.03 16 22 C 0.00 -0.04 9.64 -38.82 -0.37 -0.41 16 23 N -0.49 -7.16 11.28 -12.06 -0.14 -7.29 16 24 C 0.25 2.49 12.50 -89.76 -1.12 1.37 16 25 N -0.50 -4.66 3.20 -123.12 -0.39 -5.06 16 26 C 0.08 0.34 11.17 59.85 0.67 1.01 16 27 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.05 0.67 7.27 -51.92 -0.38 0.30 16 32 H 0.09 1.54 8.13 -51.93 -0.42 1.12 16 33 H 0.11 1.51 3.98 -52.28 -0.21 1.30 16 34 H 0.05 1.51 6.42 -51.93 -0.33 1.18 16 35 H 0.04 1.17 7.51 -51.92 -0.39 0.79 16 36 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 37 H 0.16 1.88 2.71 -52.49 -0.14 1.73 16 38 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 39 H 0.14 2.66 7.92 -52.49 -0.42 2.25 16 40 H 0.21 1.02 8.06 -52.49 -0.42 0.60 16 41 H 0.07 0.24 8.14 -51.92 -0.42 -0.18 16 42 H 0.09 0.16 8.14 -51.93 -0.42 -0.27 16 43 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 LS Contribution 358.27 15.07 5.40 5.40 Total: -1.00 -39.08 358.27 -8.26 -47.34 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: -5.64 Total: -1.45 kcal Atomic # 6 Polarization: 6.80 SS G_CDS: -2.55 Total: 4.26 kcal Atomic # 7 Polarization: -52.11 SS G_CDS: -0.23 Total: -52.35 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: -0.22 Total: -20.86 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -39.08 -8.26 -47.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127664153.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.057 kcal (2) G-P(sol) polarization free energy of solvation -39.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds