Wall clock time and date at job start Tue Mar 31 2020 11:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42904 * 114.00443 * 2 1 4 4 C 1.52993 * 109.47396 * 180.02562 * 3 2 1 5 5 N 1.46505 * 109.47073 * 64.99525 * 4 3 2 6 6 C 1.46493 * 120.00175 * 279.25568 * 5 4 3 7 7 C 1.50702 * 109.47506 * 264.47447 * 6 5 4 8 8 H 1.07989 * 119.99824 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99907 * 179.97438 * 7 6 5 10 10 N 1.31511 * 119.99963 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 119.99740 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47508 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.47076 * 120.00204 * 11 9 7 14 14 H 1.48495 * 109.47380 * 240.00086 * 11 9 7 15 15 C 1.34780 * 119.99677 * 99.26085 * 5 4 3 16 16 O 1.21576 * 119.99842 * 186.55786 * 15 5 4 17 17 C 1.47683 * 119.99902 * 6.55815 * 15 5 4 18 18 C 1.40129 * 119.90359 * 329.52908 * 17 15 5 19 19 C 1.36435 * 120.45621 * 179.97438 * 18 17 15 20 20 C 1.39067 * 120.14741 * 0.02562 * 19 18 17 21 21 C 1.40689 * 120.14605 * 359.97438 * 20 19 18 22 22 C 1.39125 * 119.89905 * 149.50630 * 17 15 5 23 23 N 1.35867 * 106.93599 * 180.26082 * 21 20 19 24 24 C 1.30073 * 109.56232 * 359.59398 * 23 21 20 25 25 N 1.36094 * 110.12168 * 0.41342 * 24 23 21 26 26 C 1.46499 * 126.29639 * 179.74475 * 25 24 23 27 27 H 1.08995 * 109.47449 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47025 * 300.00018 * 1 2 3 29 29 H 1.09003 * 109.47117 * 59.99814 * 1 2 3 30 30 H 1.08994 * 109.46769 * 59.99738 * 3 2 1 31 31 H 1.09008 * 109.46543 * 299.99856 * 3 2 1 32 32 H 1.09006 * 109.47418 * 305.00164 * 4 3 2 33 33 H 1.08997 * 109.47356 * 184.99890 * 4 3 2 34 34 H 1.09003 * 109.47209 * 24.48158 * 6 5 4 35 35 H 1.09008 * 109.47009 * 144.47557 * 6 5 4 36 36 H 0.96999 * 120.00162 * 179.97438 * 10 9 7 37 37 H 1.08001 * 119.77453 * 359.97438 * 18 17 15 38 38 H 1.08002 * 119.92410 * 179.97438 * 19 18 17 39 39 H 1.07999 * 120.24831 * 0.02562 * 22 17 15 40 40 H 1.07992 * 124.93647 * 180.16176 * 24 23 21 41 41 H 1.09007 * 109.47092 * 270.00168 * 26 25 24 42 42 H 1.09000 * 109.47477 * 30.00384 * 26 25 24 43 43 H 1.09006 * 109.46998 * 150.00601 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9756 0.5642 -1.2527 6 6 3.9122 -0.8907 -1.4112 7 6 5.2526 -1.4917 -1.0748 8 1 6.0699 -0.8537 -0.7728 9 6 5.4353 -2.8562 -1.1517 10 7 4.4398 -3.6331 -1.5191 11 14 7.0966 -3.6011 -0.7340 12 1 8.0414 -2.5211 -0.3519 13 1 6.9435 -4.5482 0.3995 14 1 7.6254 -4.3263 -1.9170 15 6 4.4390 1.3322 -2.2588 16 8 4.6918 0.8327 -3.3380 17 6 4.6397 2.7804 -2.0501 18 6 3.8232 3.4760 -1.1484 19 6 3.9991 4.8138 -0.9465 20 6 4.9927 5.4996 -1.6367 21 6 5.8214 4.8168 -2.5458 22 6 5.6391 3.4498 -2.7491 23 7 6.6877 5.7311 -3.0553 24 6 6.4431 6.8988 -2.5372 25 7 5.4109 6.8124 -1.6544 26 6 4.8482 7.9127 -0.8677 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.6886 1.8463 0.8899 31 1 1.6886 1.8463 -0.8901 32 1 3.8515 0.5681 0.8409 33 1 3.9785 2.1764 0.0889 34 1 3.1537 -1.2965 -0.7417 35 1 3.6538 -1.1330 -2.4422 36 1 4.5684 -4.5930 -1.5736 37 1 3.0494 2.9495 -0.6094 38 1 3.3647 5.3416 -0.2498 39 1 6.2688 2.9145 -3.4443 40 1 6.9834 7.8043 -2.7704 41 1 5.3734 7.9841 0.0848 42 1 4.9626 8.8475 -1.4166 43 1 3.7899 7.7253 -0.6859 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127664153.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:58 Heat of formation + Delta-G solvation = 9.032462 kcal Electronic energy + Delta-G solvation = -26651.937438 eV Core-core repulsion = 22891.869051 eV Total energy + Delta-G solvation = -3760.068387 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.18517 -41.19781 -38.80344 -38.00290 -36.63626 -35.24721 -34.78707 -31.77217 -31.72179 -30.29687 -29.01833 -27.80890 -27.12372 -25.64786 -24.16833 -23.95553 -23.30472 -21.68662 -20.45756 -19.04392 -18.63027 -18.12631 -17.83947 -17.10197 -16.97896 -16.74229 -16.52074 -16.39825 -16.03630 -15.48451 -15.43519 -15.09374 -14.68004 -14.57890 -14.38239 -14.24598 -13.98867 -13.44972 -13.33242 -13.11826 -13.04460 -12.99333 -12.72067 -12.66301 -12.56637 -12.21673 -12.07203 -11.81133 -11.64455 -11.36694 -11.01374 -10.73451 -10.62377 -10.48631 -9.52837 -9.38214 -9.13462 -8.18902 -6.33155 -0.15545 0.05338 1.34521 1.37781 1.49590 1.70263 1.74550 1.94137 2.26579 2.42569 2.80417 2.93867 3.10535 3.27756 3.52302 3.66261 3.90432 4.00212 4.11511 4.23522 4.25965 4.34744 4.39220 4.39767 4.51249 4.56013 4.56923 4.63404 4.66129 4.82633 4.90888 4.92064 5.00282 5.20245 5.27675 5.31031 5.33624 5.35657 5.57579 5.71749 5.88940 6.11444 6.21120 6.37667 6.72475 6.78933 6.84893 7.27367 7.43406 8.88454 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013193 B = 0.003999 C = 0.003286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.892948 B = 7000.546510 C = 8518.335155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.414 6.414 3 C 0.039 3.961 4 C 0.070 3.930 5 N -0.585 5.585 6 C 0.270 3.730 7 C -0.545 4.545 8 H 0.047 0.953 9 C 0.008 3.992 10 N -0.926 5.926 11 Si 0.967 3.033 12 H -0.270 1.270 13 H -0.265 1.265 14 H -0.281 1.281 15 C 0.539 3.461 16 O -0.598 6.598 17 C -0.141 4.141 18 C -0.105 4.105 19 C -0.089 4.089 20 C 0.059 3.941 21 C 0.012 3.988 22 C -0.032 4.032 23 N -0.546 5.546 24 C 0.275 3.725 25 N -0.489 5.489 26 C 0.069 3.931 27 H 0.078 0.922 28 H 0.068 0.932 29 H 0.043 0.957 30 H 0.108 0.892 31 H 0.056 0.944 32 H 0.077 0.923 33 H 0.145 0.855 34 H 0.045 0.955 35 H -0.015 1.015 36 H 0.266 0.734 37 H 0.177 0.823 38 H 0.179 0.821 39 H 0.104 0.896 40 H 0.264 0.736 41 H 0.091 0.909 42 H 0.118 0.882 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.090 28.897 9.331 30.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.333 6.333 3 C -0.038 4.038 4 C -0.051 4.051 5 N -0.314 5.314 6 C 0.150 3.850 7 C -0.584 4.584 8 H 0.066 0.934 9 C -0.191 4.191 10 N -0.565 5.565 11 Si 0.791 3.209 12 H -0.195 1.195 13 H -0.190 1.190 14 H -0.207 1.207 15 C 0.329 3.671 16 O -0.481 6.481 17 C -0.147 4.147 18 C -0.125 4.125 19 C -0.110 4.110 20 C -0.052 4.052 21 C -0.105 4.105 22 C -0.053 4.053 23 N -0.265 5.265 24 C -0.010 4.010 25 N -0.178 5.178 26 C -0.070 4.070 27 H 0.097 0.903 28 H 0.086 0.914 29 H 0.062 0.938 30 H 0.125 0.875 31 H 0.074 0.926 32 H 0.095 0.905 33 H 0.162 0.838 34 H 0.063 0.937 35 H 0.003 0.997 36 H 0.075 0.925 37 H 0.194 0.806 38 H 0.197 0.803 39 H 0.122 0.878 40 H 0.280 0.720 41 H 0.109 0.891 42 H 0.136 0.864 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -5.360 28.194 8.279 29.870 hybrid contribution 0.282 -1.008 -0.061 1.048 sum -5.077 27.187 8.218 28.852 Atomic orbital electron populations 1.22874 0.79967 1.03070 1.00989 1.88079 1.21226 1.28494 1.95532 1.23234 0.92772 0.85436 1.02376 1.22801 0.94073 1.01799 0.86457 1.48002 1.60840 1.08042 1.14483 1.18756 0.96165 0.74923 0.95194 1.21783 0.97867 0.92662 1.46091 0.93441 1.25834 1.00967 0.97376 0.94897 1.70076 1.33181 1.04924 1.48356 0.85387 0.79060 0.78304 0.78151 1.19481 1.18996 1.20651 1.18847 0.77228 0.87221 0.83797 1.90699 1.53943 1.76077 1.27354 1.19553 1.00732 0.92010 1.02377 1.21759 0.99931 0.94432 0.96348 1.20006 0.97219 0.92666 1.01064 1.19221 0.99399 0.86022 1.00592 1.18920 0.97666 0.93650 1.00248 1.20163 0.96503 0.91561 0.97083 1.70430 1.26602 1.00616 1.28893 1.26353 0.88390 0.98567 0.87710 1.45622 1.28924 1.06978 1.36247 1.22451 1.00926 0.87304 0.96333 0.90341 0.91370 0.93838 0.87450 0.92580 0.90460 0.83828 0.93661 0.99687 0.92475 0.80588 0.80332 0.87778 0.72038 0.89090 0.86404 0.88374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 11.01 113.37 1.25 1.92 16 2 O -0.41 -14.38 8.80 -148.98 -1.31 -15.70 16 3 C 0.04 1.02 5.08 71.98 0.37 1.39 16 4 C 0.07 2.32 5.33 86.38 0.46 2.78 16 5 N -0.58 -27.61 2.48 -829.74 -2.06 -29.67 16 6 C 0.27 15.93 4.93 85.64 0.42 16.35 16 7 C -0.55 -34.11 9.34 25.60 0.24 -33.87 16 8 H 0.05 2.97 7.81 -2.92 -0.02 2.95 16 9 C 0.01 0.50 5.46 84.66 0.46 0.96 16 10 N -0.93 -59.18 13.29 21.45 0.28 -58.89 16 11 Si 0.97 47.95 29.54 68.60 2.03 49.98 16 12 H -0.27 -13.14 7.11 99.48 0.71 -12.43 16 13 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 14 H -0.28 -13.73 7.11 99.48 0.71 -13.03 16 15 C 0.54 26.38 7.39 86.74 0.64 27.03 16 16 O -0.60 -35.84 16.34 -3.96 -0.06 -35.90 16 17 C -0.14 -5.28 5.57 -20.11 -0.11 -5.39 16 18 C -0.11 -2.65 7.39 22.31 0.16 -2.48 16 19 C -0.09 -1.63 9.97 22.05 0.22 -1.41 16 20 C 0.06 1.33 6.87 39.00 0.27 1.59 16 21 C 0.01 0.39 7.22 39.40 0.28 0.68 16 22 C -0.03 -1.25 9.64 22.76 0.22 -1.03 16 23 N -0.55 -15.73 11.28 -192.08 -2.17 -17.90 16 24 C 0.28 4.45 12.50 180.05 2.25 6.70 16 25 N -0.49 -6.77 3.20 -543.45 -1.74 -8.51 16 26 C 0.07 0.13 11.17 127.77 1.43 1.55 16 27 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 29 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.06 1.41 7.27 -2.38 -0.02 1.40 16 32 H 0.08 2.71 8.13 -2.38 -0.02 2.69 16 33 H 0.14 3.73 3.98 -2.72 -0.01 3.72 16 34 H 0.05 2.72 6.42 -2.39 -0.02 2.70 16 35 H -0.01 -1.02 7.51 -2.38 -0.02 -1.04 16 36 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 37 H 0.18 3.67 2.71 -2.91 -0.01 3.66 16 38 H 0.18 1.38 8.06 -2.91 -0.02 1.36 16 39 H 0.10 4.58 7.92 -2.91 -0.02 4.56 16 40 H 0.26 1.09 8.06 -2.91 -0.02 1.07 16 41 H 0.09 -0.02 8.14 -2.38 -0.02 -0.04 16 42 H 0.12 -0.40 8.14 -2.39 -0.02 -0.42 16 43 H 0.10 -0.01 8.14 -2.38 -0.02 -0.03 16 Total: -1.00 -97.94 358.27 4.56 -93.37 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: 1.03 Total: 6.45 kcal Atomic # 6 Polarization: 8.20 SS G_CDS: 8.56 Total: 16.76 kcal Atomic # 7 Polarization: -109.28 SS G_CDS: -5.68 Total: -114.96 kcal Atomic # 8 Polarization: -50.22 SS G_CDS: -1.38 Total: -51.60 kcal Atomic # 14 Polarization: 47.95 SS G_CDS: 2.03 Total: 49.98 kcal Total: -97.94 4.56 -93.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127664153.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.404 kcal (2) G-P(sol) polarization free energy of solvation -97.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds