Wall clock time and date at job start Tue Mar 31 2020 11:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46495 * 120.00072 * 2 1 4 4 C 1.50697 * 109.47277 * 270.00493 * 3 2 1 5 5 H 1.08005 * 120.00161 * 359.97438 * 4 3 2 6 6 C 1.37875 * 119.99864 * 180.02562 * 4 3 2 7 7 N 1.31513 * 120.00084 * 359.97438 * 6 4 3 8 8 Si 1.86809 * 119.99979 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.46692 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47024 * 119.99474 * 8 6 4 11 11 H 1.48499 * 109.46858 * 239.99782 * 8 6 4 12 12 C 1.34775 * 119.99697 * 180.02562 * 2 1 3 13 13 O 1.21591 * 119.99756 * 180.02562 * 12 2 1 14 14 N 1.34775 * 120.00091 * 359.97438 * 12 2 1 15 15 C 1.39984 * 119.99783 * 184.58900 * 14 12 2 16 16 C 1.38983 * 119.99041 * 144.90856 * 15 14 12 17 17 C 1.38284 * 120.34307 * 180.34304 * 16 15 14 18 18 C 1.37903 * 120.06974 * 359.90859 * 17 16 15 19 19 C 1.39640 * 119.95069 * 359.45536 * 18 17 16 20 20 C 1.38704 * 119.99320 * 324.88701 * 15 14 12 21 21 C 1.47787 * 118.99621 * 181.73634 * 19 18 17 22 22 O 1.21558 * 120.28497 * 192.95967 * 21 19 18 23 23 N 1.34666 * 119.37993 * 13.16891 * 21 19 18 24 24 C 1.46502 * 119.47080 * 187.68913 * 23 21 19 25 25 C 1.46119 * 121.04936 * 7.41427 * 23 21 19 26 26 C 1.50628 * 120.60473 * 179.32765 * 18 17 16 27 27 H 1.09007 * 109.46774 * 269.99391 * 1 2 3 28 28 H 1.09000 * 109.47333 * 29.99712 * 1 2 3 29 29 H 1.09003 * 109.47559 * 149.99869 * 1 2 3 30 30 H 1.09003 * 109.47140 * 30.00433 * 3 2 1 31 31 H 1.08998 * 109.46934 * 149.99694 * 3 2 1 32 32 H 0.96999 * 120.00151 * 180.02562 * 7 6 4 33 33 H 0.96997 * 120.00748 * 4.59286 * 14 12 2 34 34 H 1.07996 * 119.82751 * 0.36338 * 16 15 14 35 35 H 1.08003 * 119.96362 * 179.97438 * 17 16 15 36 36 H 1.07998 * 120.22125 * 0.03770 * 20 15 14 37 37 H 1.08999 * 109.47256 * 269.72400 * 24 23 21 38 38 H 1.08998 * 109.47184 * 29.73383 * 24 23 21 39 39 H 1.09010 * 109.46729 * 149.72703 * 24 23 21 40 40 H 1.08998 * 109.17345 * 80.47197 * 25 23 21 41 41 H 1.09000 * 109.17233 * 199.69141 * 25 23 21 42 42 H 1.08995 * 109.36326 * 26.47312 * 26 18 17 43 43 H 1.09005 * 109.25267 * 266.80819 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0980 1.0958 -2.2417 6 6 3.1268 2.8775 -1.6726 7 7 3.5542 3.6175 -0.6730 8 14 3.4375 3.4172 -3.4339 9 1 2.8595 2.4173 -4.3672 10 1 2.8004 4.7383 -3.6664 11 1 4.9000 3.5248 -3.6679 12 6 2.1388 -1.1672 -0.0005 13 8 3.3548 -1.1672 -0.0001 14 7 1.4649 -2.3344 -0.0005 15 6 2.1615 -3.5448 0.0959 16 6 1.6079 -4.6112 0.7944 17 6 2.2928 -5.8078 0.9003 18 6 3.5310 -5.9498 0.3101 19 6 4.0885 -4.8877 -0.4048 20 6 3.4038 -3.6797 -0.5060 21 6 5.3991 -5.0757 -1.0613 22 8 6.0154 -4.1175 -1.4853 23 7 5.9019 -6.3184 -1.1891 24 6 7.2696 -6.4953 -1.6834 25 6 5.1070 -7.4928 -0.8369 26 6 4.2942 -7.2428 0.4306 27 1 -0.3633 -0.0001 1.0277 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3634 -0.8900 -0.5138 30 1 1.6085 2.0283 0.5139 31 1 3.1499 1.1383 0.5139 32 1 4.0310 4.4434 -0.8502 33 1 0.4973 -2.3358 -0.0674 34 1 0.6377 -4.5048 1.2566 35 1 1.8570 -6.6324 1.4449 36 1 3.8373 -2.8531 -1.0494 37 1 7.2543 -6.5882 -2.7693 38 1 7.8725 -5.6323 -1.4009 39 1 7.6996 -7.3972 -1.2476 40 1 4.4283 -7.7249 -1.6576 41 1 5.7731 -8.3401 -0.6739 42 1 3.5929 -8.0640 0.5780 43 1 4.9674 -7.1845 1.2860 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000136465151.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:17 Heat of formation + Delta-G solvation = -17.897524 kcal Electronic energy + Delta-G solvation = -26345.348340 eV Core-core repulsion = 22584.112182 eV Total energy + Delta-G solvation = -3761.236158 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.86348 -39.81571 -38.10601 -36.44330 -35.01183 -34.45958 -32.63377 -31.84071 -31.17554 -28.71265 -27.57951 -27.20771 -25.82650 -24.17311 -23.23096 -22.76683 -21.60532 -19.53129 -19.15226 -17.93446 -17.21913 -16.62592 -16.45259 -16.17520 -15.92063 -15.22655 -15.02144 -14.73216 -14.41944 -14.18140 -13.88152 -13.61717 -13.50239 -13.28348 -13.07542 -12.89994 -12.75872 -12.54095 -12.20062 -12.14962 -11.96383 -11.73936 -11.41996 -11.34553 -11.16619 -10.85613 -10.56084 -10.13262 -10.00682 -9.82824 -9.60334 -9.26231 -8.96175 -8.75902 -8.39874 -7.98444 -7.58492 -6.00635 -4.05187 0.87003 1.40352 2.82004 2.84158 3.17678 3.33862 3.42193 3.46566 3.72003 4.03454 4.32997 4.44169 4.46378 4.53708 4.56919 4.84493 4.98450 5.05723 5.11500 5.22171 5.27614 5.33765 5.35533 5.45348 5.51649 5.64133 5.67222 5.71963 5.83654 5.90283 6.10356 6.22369 6.27189 6.36036 6.47943 6.65033 6.80125 7.17008 7.24272 7.35591 7.51079 7.66630 7.96928 8.17903 8.25916 8.56083 8.95446 9.23192 9.60239 11.07393 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015110 B = 0.003535 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.575255 B = 7919.211079 C = 9397.864556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.611 5.611 3 C 0.259 3.741 4 C -0.527 4.527 5 H 0.058 0.942 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.282 1.282 12 C 0.694 3.306 13 O -0.561 6.561 14 N -0.696 5.696 15 C 0.171 3.829 16 C -0.128 4.128 17 C -0.106 4.106 18 C -0.083 4.083 19 C -0.118 4.118 20 C -0.056 4.056 21 C 0.561 3.439 22 O -0.517 6.517 23 N -0.621 5.621 24 C 0.087 3.913 25 C 0.118 3.882 26 C -0.094 4.094 27 H 0.045 0.955 28 H 0.079 0.921 29 H 0.049 0.951 30 H 0.035 0.965 31 H 0.046 0.954 32 H 0.263 0.737 33 H 0.403 0.597 34 H 0.128 0.872 35 H 0.129 0.871 36 H 0.159 0.841 37 H 0.054 0.946 38 H 0.076 0.924 39 H 0.069 0.931 40 H 0.066 0.934 41 H 0.085 0.915 42 H 0.093 0.907 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.617 -25.511 3.341 26.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.346 5.346 3 C 0.140 3.860 4 C -0.566 4.566 5 H 0.076 0.924 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.208 1.208 12 C 0.396 3.604 13 O -0.437 6.437 14 N -0.347 5.347 15 C 0.074 3.926 16 C -0.150 4.150 17 C -0.125 4.125 18 C -0.084 4.084 19 C -0.122 4.122 20 C -0.077 4.077 21 C 0.350 3.650 22 O -0.393 6.393 23 N -0.357 5.357 24 C -0.056 4.056 25 C -0.005 4.005 26 C -0.132 4.132 27 H 0.064 0.936 28 H 0.098 0.902 29 H 0.068 0.932 30 H 0.053 0.947 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.240 0.760 34 H 0.146 0.854 35 H 0.147 0.853 36 H 0.177 0.823 37 H 0.073 0.927 38 H 0.095 0.905 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.104 0.896 42 H 0.112 0.888 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.302 -24.658 3.150 25.076 hybrid contribution -0.456 0.383 -0.923 1.098 sum -3.757 -24.275 2.227 24.664 Atomic orbital electron populations 1.21596 0.81659 1.02376 1.00401 1.47509 1.05733 1.06283 1.75118 1.19274 0.92420 0.76736 0.97582 1.21488 1.36501 1.06231 0.92353 0.92405 1.24924 0.95279 0.96394 0.97456 1.69939 1.38418 1.14360 1.30653 0.86438 0.78181 0.78183 0.84602 1.19826 1.20999 1.20807 1.15975 0.85643 0.80094 0.78696 1.90944 1.11198 1.85302 1.56224 1.42980 1.10000 1.03564 1.78110 1.17477 0.93264 0.85582 0.96277 1.21024 1.01382 0.93350 0.99216 1.20578 0.94064 0.97324 1.00518 1.19822 0.95052 0.94691 0.98871 1.19505 0.95581 0.94680 1.02431 1.21540 0.93356 0.96535 0.96286 1.18240 0.85742 0.82324 0.78712 1.90842 1.61062 1.39727 1.47655 1.47515 1.15359 1.05955 1.66824 1.21669 0.82115 1.02557 0.99240 1.21349 0.94702 0.87571 0.96848 1.20755 0.98754 0.95349 0.98337 0.93606 0.90218 0.93211 0.94704 0.93594 0.92763 0.76023 0.85403 0.85271 0.82333 0.92699 0.90502 0.91276 0.91590 0.89644 0.88848 0.89854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.30 10.24 59.85 0.61 1.91 16 2 N -0.61 -13.22 2.86 -188.74 -0.54 -13.76 16 3 C 0.26 6.91 5.16 -5.20 -0.03 6.89 16 4 C -0.53 -15.30 9.39 -34.44 -0.32 -15.63 16 5 H 0.06 1.69 7.81 -52.48 -0.41 1.28 16 6 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 7 N -0.89 -27.13 13.29 55.43 0.74 -26.39 16 8 Si 0.90 22.55 29.54 -169.99 -5.02 17.53 16 9 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 12 C 0.69 15.24 8.12 -86.92 -0.71 14.54 16 13 O -0.56 -15.01 13.36 5.29 0.07 -14.94 16 14 N -0.70 -11.43 5.22 -14.23 -0.07 -11.50 16 15 C 0.17 2.70 6.30 -83.69 -0.53 2.18 16 16 C -0.13 -1.49 9.95 -39.29 -0.39 -1.88 16 17 C -0.11 -1.07 9.70 -39.69 -0.39 -1.46 16 18 C -0.08 -0.95 5.69 -104.26 -0.59 -1.55 16 19 C -0.12 -1.87 5.79 -105.10 -0.61 -2.48 16 20 C -0.06 -1.04 8.27 -39.04 -0.32 -1.36 16 21 C 0.56 9.37 7.49 -12.41 -0.09 9.28 16 22 O -0.52 -11.01 16.17 5.31 0.09 -10.92 16 23 N -0.62 -7.40 3.19 -183.28 -0.58 -7.98 16 24 C 0.09 0.84 10.37 59.85 0.62 1.46 16 25 C 0.12 0.90 6.46 -4.43 -0.03 0.87 16 26 C -0.09 -0.71 6.04 -28.11 -0.17 -0.88 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.08 1.27 8.07 -51.93 -0.42 0.85 16 29 H 0.05 0.60 6.30 -51.93 -0.33 0.28 16 30 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 31 H 0.05 1.39 7.42 -51.93 -0.39 1.00 16 32 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 33 H 0.40 5.04 6.52 -40.82 -0.27 4.77 16 34 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 35 H 0.13 0.85 8.06 -52.48 -0.42 0.43 16 36 H 0.16 3.66 5.95 -52.49 -0.31 3.34 16 37 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.08 0.89 7.51 -51.93 -0.39 0.50 16 39 H 0.07 0.43 7.79 -51.92 -0.40 0.03 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.09 0.40 7.73 -51.93 -0.40 0.00 16 42 H 0.09 0.43 8.07 -51.93 -0.42 0.01 16 43 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 357.61 15.07 5.39 5.39 Total: -1.00 -38.45 357.61 -8.80 -47.25 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -5.83 Total: 1.74 kcal Atomic # 6 Polarization: 16.63 SS G_CDS: -3.04 Total: 13.59 kcal Atomic # 7 Polarization: -59.18 SS G_CDS: -0.46 Total: -59.64 kcal Atomic # 8 Polarization: -26.02 SS G_CDS: 0.16 Total: -25.86 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -38.45 -8.80 -47.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000136465151.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.354 kcal (2) G-P(sol) polarization free energy of solvation -38.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds